View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_19 (Length: 357)
Name: NF18168_low_19
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 114 - 339
Target Start/End: Original strand, 33731641 - 33731866
Alignment:
| Q |
114 |
cttccactagtgactacttaatcatactgttttgtattatttcatgatgatacataattaattataggtttatagcttcatgtgtcgtcttatgagtgca |
213 |
Q |
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| T |
33731641 |
cttccactagtgactacttaatcatactgttttgtattatttcatgatgatacataattaattataggtttatagcttcatgtgtcgtcttatgggtgca |
33731740 |
T |
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| Q |
214 |
tattttggatacatcaatttttcctttactttttatattaccacttgcacctaaggtgggatcatacctagtttattaaagtagagttaaaggcactata |
313 |
Q |
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| T |
33731741 |
tattttggatacatcaatttttcctttactttttatattaccacttgcacctaaggtgggatcatacctagtttattaaagtagagttaaaggcactata |
33731840 |
T |
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| Q |
314 |
tattataacgacatccattatattta |
339 |
Q |
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| T |
33731841 |
tattataacgacatccattatattta |
33731866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 33731543 - 33731580
Alignment:
| Q |
17 |
cacagatctaatcaagattcttgaaattgcaactcgca |
54 |
Q |
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| T |
33731543 |
cacagatctaatcaagattcttgaaattgcaactcgca |
33731580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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