View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18168_low_21 (Length: 347)

Name: NF18168_low_21
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18168_low_21
NF18168_low_21
[»] chr7 (2 HSPs)
chr7 (9-317)||(43305532-43305840)
chr7 (214-317)||(46422440-46422543)
[»] chr4 (5 HSPs)
chr4 (9-317)||(44721147-44721455)
chr4 (173-317)||(10820737-10820883)
chr4 (55-170)||(10820474-10820589)
chr4 (252-317)||(10820671-10820733)
chr4 (192-235)||(10820589-10820632)
[»] chr5 (1 HSPs)
chr5 (9-317)||(9162962-9163270)
[»] chr1 (1 HSPs)
chr1 (39-317)||(25345547-25345823)
[»] chr6 (3 HSPs)
chr6 (55-317)||(9753232-9753494)
chr6 (205-317)||(12866173-12866285)
chr6 (106-209)||(12854258-12854361)
[»] chr3 (1 HSPs)
chr3 (55-196)||(18347962-18348101)
[»] chr2 (2 HSPs)
chr2 (142-228)||(11906177-11906263)
chr2 (142-228)||(30520067-30520153)
[»] chr8 (1 HSPs)
chr8 (142-211)||(13673421-13673490)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 43305840 - 43305532
Alignment:
Q  9 accacagaaagtaagaaacaaaccatccagcactttctaatcccctctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43305840 accacaaaaagtaagaaacaaaccatccagcactttctaatcccctctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaa 43305741  T
Q  109 tctctagcaactgaaatcctagaaggaatggggaatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaact 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43305740 tctatagcaactgaaatcctagaaggaatggggaatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaact 43305641  T
Q  209 catcaacaattatcatcctaactaacgctttcctccatgcttcaacatcaaaatggacaccggaaagagtactgccagttcctgtcccatcttctttttt 308  Q
    ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  43305640 catcaacaattatcatcttagctaacgctttcctacatgcttcaacatcaaaatggacaccggaaagagtactaccagttcctgtctcatcttctttttt 43305541  T
Q  309 caattgttg 317  Q
    |||||||||    
T  43305540 caattgttg 43305532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 46422440 - 46422543
Alignment:
Q  214 acaattatcatcctaactaacgctttcctccatgcttcaacatcaaaatggacaccggaaagagtactgccagttcctgtcccatcttcttttttcaatt 313  Q
    |||| |||||| ||||| || | |||||| |||||  |||||||||||||||||| ||||| || ||| | ||||| | |||  |||||||| |||||||    
T  46422440 acaaatatcatgctaacaaaagatttcctacatgcaccaacatcaaaatggacactggaaaaagcactacgagttcgtttcctgtcttctttgttcaatt 46422539  T
Q  314 gttg 317  Q
    ||||    
T  46422540 gttg 46422543  T

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Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 44721147 - 44721455
Alignment:
Q  9 accacagaaagtaagaaacaaaccatccagcactttctaatcccctctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44721147 accacaaaaagtaagaaacaaaccatccagcactttctaatcccctctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaa 44721246  T
Q  109 tctctagcaactgaaatcctagaaggaatggggaatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaact 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44721247 tctatagcaactgaaatcctagaaggaatggggaatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaact 44721346  T
Q  209 catcaacaattatcatcctaactaacgctttcctccatgcttcaacatcaaaatggacaccggaaagagtactgccagttcctgtcccatcttctttttt 308  Q
    ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  44721347 catcaacaattatcatcttagctaacgctttcctacatgcttcaacatcaaaatggacaccggaaagagtactaccagttcctgtctcatcttctttttt 44721446  T
Q  309 caattgttg 317  Q
    |||||||||    
T  44721447 caattgttg 44721455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 173 - 317
Target Start/End: Original strand, 10820737 - 10820883
Alignment:
Q  173 gaaattcctccccctcaagaaactta---aaaggcaactcatcaacaattatcatcctaa--ctaacgctttcctccatgcttcaacatcaaaatggaca 267  Q
    ||||||||| |||||| | |||||||   ||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||    
T  10820737 gaaattccttcccctcgataaacttatttaaaggcaactcatcaacaattatcatcctatagctaacgctttcctacatgcttcaacatcaaaatggaca 10820836  T
Q  268 ccggaaagagtactgccagttcctgtcccatcttcttttttcaattgttg 317  Q
    |||||||||||||| ||||||||| | |||   |||||||||||||||||    
T  10820837 ccggaaagagtactaccagttccttttcca---tcttttttcaattgttg 10820883  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 10820474 - 10820589
Alignment:
Q  55 ctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaatctctagcaactgaaatcctagaaggaatggggaatctaggctgca 154  Q
    ||||||||||||| || ||||||||||||||||| ||| |||||||||   |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  10820474 ctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctttagcagctgaaatcctagaaggaatggggaatctaggctgca 10820573  T
Q  155 caacactcacaaaata 170  Q
    |||||||||| |||||    
T  10820574 caacactcacgaaata 10820589  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 10820733 - 10820671
Alignment:
Q  252 aacatcaaaatggacaccggaaagagtactgccagttcctgtcccatcttcttttttcaattgttg 317  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||   |||||||||||||||||    
T  10820733 aacatcaaaatggacaccggaaagagtactaccagttcctttccca---tcttttttcaattgttg 10820671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 10820589 - 10820632
Alignment:
Q  192 aaacttaaaaggcaactcatcaacaattatcatcctaactaacg 235  Q
    |||||| |||||||||| ||||||||||||||||||| ||||||    
T  10820589 aaactttaaaggcaactaatcaacaattatcatcctagctaacg 10820632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 9163270 - 9162962
Alignment:
Q  9 accacagaaagtaagaaacaaaccatccagcactttctaatcccctctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaa 108  Q
    |||||| |||||||||||||||||||  |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  9163270 accacaaaaagtaagaaacaaaccatatagcactttctaatccccttttctaaacatacttcttaacttatgtttctcttcggttaaaatatctcagcaa 9163171  T
Q  109 tctctagcaactgaaatcctagaaggaatggggaatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaact 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  9163170 tctctagcaactgaaatcctagaaggaatggggaatctaggctgcccaacactcataaaatagcaaaattcctccccctcaagaaacttaaaaggcaact 9163071  T
Q  209 catcaacaattatcatcctaactaacgctttcctccatgcttcaacatcaaaatggacaccggaaagagtactgccagttcctgtcccatcttctttttt 308  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  9163070 catcaacaattatcatcctaactaacgctttcctacatacttcaacatcaaaatggacactggaaagagtactactagttcctgtcccatcttctttttt 9162971  T
Q  309 caattgttg 317  Q
    |||||||||    
T  9162970 caattgttg 9162962  T

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Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 39 - 317
Target Start/End: Complemental strand, 25345823 - 25345547
Alignment:
Q  39 cactttctaatcccctctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaatctctagcaactgaaatcctagaaggaatg 138  Q
    |||||| ||||||||||  ||||| |||||| |||||||||||||||| |  || ||||||||||| |||||||||||| ||||||||||| |||||||     
T  25345823 cactttgtaatcccctc--ctaaaaatactttttaacttatgtttctcatcagtgaaaatatcccaacaatctctagcagctgaaatcctataaggaatt 25345726  T
Q  139 gggaatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaactcatcaacaattatcatcctaactaacgctt 238  Q
    | |||||||||||||||||||||||  ||||||||||   |||||||||||| |||||||||||| |||||||||||||||||||| ||| |||| ||||    
T  25345725 gagaatctaggctgcacaacactcatgaaatagcgaagcccctccccctcaacaaacttaaaaggtaactcatcaacaattatcattctagctaatgctt 25345626  T
Q  239 tcctccatgcttcaacatcaaaatggacaccggaaagagtactgccagttcctgtcccatcttcttttttcaattgttg 317  Q
    |||| ||||||||| |||||||||||||| | | ||||||||| ||||||||  |||||||||||||||||||||||||    
T  25345625 tcctacatgcttcagcatcaaaatggacagcagcaagagtactaccagttccattcccatcttcttttttcaattgttg 25345547  T

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Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 55 - 317
Target Start/End: Complemental strand, 9753494 - 9753232
Alignment:
Q  55 ctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaatctctagcaactgaaatcctagaaggaatggggaatctaggctgca 154  Q
    |||||||||||||||||||  ||||||||||| | ||| ||||||||||| |||||| ||||| ||| ||||||||||||||| |||||||| |||||||    
T  9753494 ctcctaaacatacttcttagtttatgtttctcatcggtcaaaatatcccaacaatctttagcagctgcaatcctagaaggaattgggaatctcggctgca 9753395  T
Q  155 caacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaactcatcaacaattatcatcctaactaacgctttcctccatgcttcaac 254  Q
    |||||||||  ||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |  ||||    
T  9753394 caacactcatgaaatagcgaaatttctccccctcgacaaacttaaaaggtaactcatcaacaattatcatcctagctaacgctttcctacattcggcaac 9753295  T
Q  255 atcaaaatggacaccggaaagagtactgccagttcctgtcccatcttcttttttcaattgttg 317  Q
    |||||||| | || ||| ||||||||| | ||| ||| |||||||||||||||||||| ||||    
T  9753294 atcaaaattgtcagcggcaagagtactactagtccctttcccatcttcttttttcaatggttg 9753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 317
Target Start/End: Original strand, 12866173 - 12866285
Alignment:
Q  205 aactcatcaacaattatcatcctaactaacgctttcctccatgcttcaacatcaaaatggacaccggaaagagtactgccagttcctgtcccatcttctt 304  Q
    |||||||||||||||||||| ||| |||| ||||| || |||| |||| |||||||||||||| | | ||||||||||||||||||  ||||||||||||    
T  12866173 aactcatcaacaattatcattctagctaatgcttttctacatgtttcagcatcaaaatggacagcagcaagagtactgccagttccattcccatcttctt 12866272  T
Q  305 ttttcaattgttg 317  Q
    |||||||||||||    
T  12866273 ttttcaattgttg 12866285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 12854258 - 12854361
Alignment:
Q  106 caatctctagcaactgaaatcctagaaggaatggggaatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggca 205  Q
    |||||||||||| ||||||||||||||||||| |  |||||||| |||||||||||||  |||||||||||  |||||||||||| |||||||||||| |    
T  12854258 caatctctagcagctgaaatcctagaaggaattgaaaatctaggttgcacaacactcatgaaatagcgaaacccctccccctcaacaaacttaaaaggta 12854357  T
Q  206 actc 209  Q
    ||||    
T  12854358 actc 12854361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 18348101 - 18347962
Alignment:
Q  55 ctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaatctctagcaactgaaatcctagaaggaatggggaatctaggctgca 154  Q
    ||||||| ||||||| |||||||||||||||| || || ||||||||||| |||||| ||  |  |||||||||| ||||||| ||||||||||||||||    
T  18348101 ctcctaatcatactttttaacttatgtttctcattagtgaaaatatcccaacaatctgtataagatgaaatcctaaaaggaattgggaatctaggctgca 18348002  T
Q  155 caacactcacaaaatagcgaaattcctccccctcaagaaact 196  Q
    |||||  ||  |||||||||||| |||||||||||| |||||    
T  18348001 caaca--catgaaatagcgaaatccctccccctcaacaaact 18347962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 11906177 - 11906263
Alignment:
Q  142 aatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaactcatcaacaattatcatccta 228  Q
    |||||||| |||||||||||||  ||||| |||||| |||| ||||||| |||||| |||||||||||||| | ||| |||||||||    
T  11906177 aatctaggttgcacaacactcatgaaataccgaaatccctctccctcaacaaacttgaaaggcaactcatctataataatcatccta 11906263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 30520153 - 30520067
Alignment:
Q  142 aatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaactcatcaacaattatcatccta 228  Q
    |||||||| |||||||||||||  ||||| |||||| |||| ||||||| |||||| |||||||||||||| | ||| |||||||||    
T  30520153 aatctaggttgcacaacactcatgaaataccgaaatccctctccctcaacaaacttgaaaggcaactcatctataataatcatccta 30520067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 13673421 - 13673490
Alignment:
Q  142 aatctaggctgcacaacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaactcat 211  Q
    |||||||| |||||||||||||  ||||| |||||| |||| ||||||| |||||| |||||||||||||    
T  13673421 aatctaggttgcacaacactcatgaaataccgaaatccctctccctcaacaaacttgaaaggcaactcat 13673490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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