View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18168_low_27 (Length: 279)

Name: NF18168_low_27
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18168_low_27
NF18168_low_27
[»] chr6 (8 HSPs)
chr6 (152-254)||(35163750-35163852)
chr6 (151-254)||(20685354-20685457)
chr6 (155-254)||(17948713-17948812)
chr6 (151-254)||(19686827-19686930)
chr6 (141-254)||(2711740-2711847)
chr6 (151-251)||(15070154-15070254)
chr6 (151-254)||(14505525-14505626)
chr6 (154-225)||(24336647-24336718)
[»] chr7 (16 HSPs)
chr7 (141-254)||(35109710-35109823)
chr7 (151-256)||(38265235-38265340)
chr7 (152-254)||(21577098-21577200)
chr7 (155-254)||(37095210-37095309)
chr7 (151-254)||(34721863-34721966)
chr7 (141-250)||(12472140-12472249)
chr7 (151-251)||(38405157-38405257)
chr7 (151-251)||(16059356-16059456)
chr7 (155-250)||(41151205-41151301)
chr7 (151-254)||(245264-245367)
chr7 (151-251)||(18116947-18117047)
chr7 (151-249)||(11216798-11216896)
chr7 (151-254)||(45278481-45278584)
chr7 (151-251)||(48176428-48176529)
chr7 (154-254)||(28407540-28407636)
chr7 (212-254)||(39234853-39234895)
[»] chr8 (20 HSPs)
chr8 (155-254)||(11404034-11404133)
chr8 (152-254)||(22711539-22711641)
chr8 (151-251)||(17095579-17095679)
chr8 (151-254)||(19723340-19723443)
chr8 (151-254)||(32296639-32296742)
chr8 (155-254)||(36261679-36261778)
chr8 (141-251)||(28739564-28739674)
chr8 (151-254)||(29767217-29767318)
chr8 (151-254)||(4840169-4840272)
chr8 (141-254)||(30682858-30682970)
chr8 (146-234)||(21355004-21355092)
chr8 (168-251)||(11909426-11909509)
chr8 (155-254)||(41553318-41553417)
chr8 (151-254)||(11610309-11610412)
chr8 (155-250)||(43288105-43288200)
chr8 (151-217)||(24475033-24475099)
chr8 (194-254)||(27879560-27879620)
chr8 (194-254)||(28019741-28019801)
chr8 (151-198)||(27881044-27881091)
chr8 (151-198)||(28021225-28021272)
[»] chr5 (12 HSPs)
chr5 (151-254)||(17064352-17064455)
chr5 (151-251)||(20983006-20983106)
chr5 (170-254)||(37976598-37976682)
chr5 (163-254)||(41910865-41910956)
chr5 (155-249)||(31673863-31673956)
chr5 (155-254)||(5009417-5009515)
chr5 (159-250)||(39162859-39162947)
chr5 (198-253)||(38255559-38255614)
chr5 (155-221)||(18303343-18303409)
chr5 (211-254)||(35237059-35237102)
chr5 (188-254)||(38031257-38031323)
chr5 (164-197)||(21968782-21968815)
[»] chr3 (29 HSPs)
chr3 (151-254)||(8400884-8400987)
chr3 (151-254)||(50823727-50823830)
chr3 (151-254)||(50852030-50852133)
chr3 (151-254)||(7417827-7417930)
chr3 (152-254)||(35198795-35198897)
chr3 (151-255)||(22371728-22371832)
chr3 (156-251)||(55468033-55468129)
chr3 (155-254)||(22855920-22856019)
chr3 (151-254)||(52545350-52545453)
chr3 (151-251)||(34824585-34824685)
chr3 (159-251)||(43334057-43334149)
chr3 (169-254)||(37330607-37330692)
chr3 (169-261)||(30534895-30534987)
chr3 (15-110)||(32902062-32902162)
chr3 (151-254)||(19872483-19872586)
chr3 (151-254)||(29635897-29636001)
chr3 (169-254)||(37454744-37454829)
chr3 (182-254)||(25910666-25910738)
chr3 (163-250)||(42876256-42876343)
chr3 (151-217)||(48077978-48078044)
chr3 (154-254)||(25589253-25589346)
chr3 (161-251)||(30203657-30203744)
chr3 (155-248)||(50726003-50726096)
chr3 (155-248)||(50786752-50786845)
chr3 (207-256)||(358940-358989)
chr3 (219-254)||(773674-773709)
chr3 (204-249)||(31297529-31297574)
chr3 (159-200)||(38724459-38724500)
chr3 (186-255)||(39623823-39623892)
[»] chr2 (25 HSPs)
chr2 (151-254)||(17136416-17136519)
chr2 (152-254)||(2754051-2754153)
chr2 (151-254)||(45136970-45137073)
chr2 (150-254)||(36836329-36836433)
chr2 (151-254)||(21637926-21638029)
chr2 (151-254)||(36380132-36380235)
chr2 (151-254)||(40156069-40156172)
chr2 (151-254)||(44650422-44650525)
chr2 (151-254)||(25987661-25987765)
chr2 (151-254)||(10745232-10745335)
chr2 (151-245)||(6672802-6672896)
chr2 (151-254)||(558439-558542)
chr2 (151-254)||(26690183-26690286)
chr2 (155-254)||(33066623-33066722)
chr2 (151-252)||(30372682-30372783)
chr2 (154-254)||(2357076-2357175)
chr2 (155-254)||(21487181-21487281)
chr2 (151-254)||(3200910-3201013)
chr2 (151-254)||(5039449-5039552)
chr2 (151-254)||(7860146-7860249)
chr2 (155-255)||(13047155-13047252)
chr2 (156-251)||(4553561-4553657)
chr2 (205-254)||(2098826-2098875)
chr2 (160-200)||(30477240-30477280)
chr2 (151-192)||(20961510-20961551)
[»] chr4 (28 HSPs)
chr4 (141-251)||(46494401-46494511)
chr4 (151-251)||(51066522-51066622)
chr4 (151-254)||(7173585-7173688)
chr4 (151-254)||(29576444-29576547)
chr4 (141-254)||(36192560-36192673)
chr4 (141-254)||(51713965-51714078)
chr4 (151-254)||(30970384-30970487)
chr4 (151-254)||(55231716-55231819)
chr4 (155-250)||(32139197-32139292)
chr4 (150-254)||(2570229-2570333)
chr4 (170-254)||(22304091-22304175)
chr4 (155-251)||(41523430-41523526)
chr4 (151-254)||(39863778-39863881)
chr4 (160-254)||(676766-676860)
chr4 (151-224)||(8740477-8740550)
chr4 (151-254)||(50905777-50905880)
chr4 (141-254)||(47626993-47627106)
chr4 (160-252)||(51279035-51279127)
chr4 (155-254)||(4080552-4080651)
chr4 (151-251)||(2294719-2294813)
chr4 (154-217)||(22423408-22423471)
chr4 (157-256)||(50399640-50399739)
chr4 (189-251)||(23084468-23084530)
chr4 (186-250)||(37990599-37990663)
chr4 (208-251)||(51066240-51066283)
chr4 (201-246)||(28202598-28202643)
chr4 (157-250)||(40012548-40012640)
chr4 (167-248)||(28202701-28202782)
[»] chr1 (16 HSPs)
chr1 (151-256)||(22024132-22024237)
chr1 (137-254)||(45324021-45324138)
chr1 (151-251)||(30054445-30054545)
chr1 (141-253)||(30370061-30370173)
chr1 (150-254)||(14498079-14498183)
chr1 (155-254)||(4573412-4573511)
chr1 (151-251)||(21090144-21090244)
chr1 (151-254)||(12025210-12025313)
chr1 (155-253)||(30850841-30850939)
chr1 (154-254)||(20014490-20014590)
chr1 (151-254)||(33762540-33762643)
chr1 (166-245)||(35371754-35371833)
chr1 (151-254)||(33763254-33763357)
chr1 (181-251)||(35618034-35618104)
chr1 (152-251)||(44438553-44438652)
chr1 (194-256)||(17015192-17015254)
[»] scaffold0021 (1 HSPs)
scaffold0021 (151-254)||(107692-107794)
[»] scaffold0691 (1 HSPs)
scaffold0691 (151-229)||(6994-7072)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 35163852 - 35163750
Alignment:
Q  152 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35163852 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 35163753  T
Q  252 ttt 254  Q
    |||    
T  35163752 ttt 35163750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 20685354 - 20685457
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  20685354 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccctaaa 20685453  T
Q  251 attt 254  Q
    ||||    
T  20685454 attt 20685457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 17948713 - 17948812
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  17948713 ctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctcaccttaaaattt 17948812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 19686930 - 19686827
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||  ||| |||||||||| |||||||||||||||||    
T  19686930 gtgcctttgtagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcccttagactggggcatcatcccctcaccctaaa 19686831  T
Q  251 attt 254  Q
    ||||    
T  19686830 attt 19686827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 2711847 - 2711740
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||      ||||||||||    
T  2711847 agccccactagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttgga------caccatcccc 2711754  T
Q  241 tcaccctaaaattt 254  Q
    ||||||||||||||    
T  2711753 tcaccctaaaattt 2711740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 15070154 - 15070254
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||| ||| ||| |||||||||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||| |||    
T  15070154 gtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcacccaaaa 15070253  T
Q  251 a 251  Q
    |    
T  15070254 a 15070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 14505626 - 14505525
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||| ||||||||||||||||||||| ||||||||||| |  |||||| || ||||| |||||| || ||||||||||||||||||||||||| ||||||    
T  14505626 gtgcttttggagggaggtaaatgtaa-tacctttgtaaatattctttgggcgcgaagatcttccgtgccttggactggggcaccatcccctca-cctaaa 14505529  T
Q  251 attt 254  Q
    ||||    
T  14505528 attt 14505525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 24336647 - 24336718
Alignment:
Q  154 cctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggac 225  Q
    ||||||||||||||||||||||||||| |||||||||| | |||||||| |||| ||||||||| |||||||    
T  24336647 cctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgccttggac 24336718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 35109710 - 35109823
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35109710 agccccactagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccc 35109809  T
Q  241 tcaccctaaaattt 254  Q
    ||||||||||||||    
T  35109810 tcaccctaaaattt 35109823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 38265340 - 38265235
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38265340 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 38265241  T
Q  251 atttat 256  Q
    ||||||    
T  38265240 atttat 38265235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 21577200 - 21577098
Alignment:
Q  152 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21577200 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 21577101  T
Q  252 ttt 254  Q
    |||    
T  21577100 ttt 21577098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 37095309 - 37095210
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37095309 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 37095210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 34721863 - 34721966
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  34721863 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgccttggactcgggcaccatcccctcaccctaaa 34721962  T
Q  251 attt 254  Q
    ||||    
T  34721963 attt 34721966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 12472140 - 12472249
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    ||||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  12472140 agccccactagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgtcttggactggggtaccatcccc 12472239  T
Q  241 tcaccctaaa 250  Q
    ||||||||||    
T  12472240 tcaccctaaa 12472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 38405257 - 38405157
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38405257 gtgcctttggagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 38405158  T
Q  251 a 251  Q
    |    
T  38405157 a 38405157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 16059456 - 16059356
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  16059456 gtgcctttgcagggaggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaa 16059357  T
Q  251 a 251  Q
    |    
T  16059356 a 16059356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 41151205 - 41151301
Alignment:
Q  155 ctttggagggaggtaaatgtaaataccttt-gtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41151205 ctttggagggaggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 41151301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 245367 - 245264
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||| |||||||||||||||||||| || ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  245367 gtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 245268  T
Q  251 attt 254  Q
    ||||    
T  245267 attt 245264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 18117047 - 18116947
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  18117047 gtgcctttagagggaggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgccttggactggggcaccatcccctcaccctaaa 18116948  T
Q  251 a 251  Q
    |    
T  18116947 a 18116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 11216798 - 11216896
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||| ||||| ||| ||||||||||||    
T  11216798 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctactttggactagggcatcattccctcaccctaa 11216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 45278481 - 45278584
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||| ||||| |||||||||| || ||||||||||||||||| | |||||| |||||||||| |||||||||| |||||||||||||||||||||    
T  45278481 gtgcctttgaagggaagtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgccttggactggagcaccatcccctcaccctaaa 45278580  T
Q  251 attt 254  Q
    ||||    
T  45278581 attt 45278584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 48176428 - 48176529
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccct-gtcttggactggggcaccatcccctcaccctaa 249  Q
    ||||||||||| |||||||||||||||||| |||||||||| | |||||||| |||||| ||||||   |||||||||||||||||||||||||||||||    
T  48176428 gtgcctttggaaggaggtaaatgtaaatacttttgtaagtgttttttgagccggaaggttttccctccccttggactggggcaccatcccctcaccctaa 48176527  T
Q  250 aa 251  Q
    ||    
T  48176528 aa 48176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 28407540 - 28407636
Alignment:
Q  154 cctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaatt 253  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    |  | |||||| ||||||||||||||||||||||||||||    
T  28407540 cctttagagggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggt----caagccttggattggggcaccatcccctcaccctaaaatt 28407635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 39234853 - 39234895
Alignment:
Q  212 tccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||| | |||||||||||||||||||||||||| |||||||    
T  39234853 tccctgccatggactggggcaccatcccctcacccaaaaattt 39234895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 11404034 - 11404133
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11404034 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 11404133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 22711539 - 22711641
Alignment:
Q  152 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  22711539 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgccttggactggggcaccatcccctcatcctaaaa 22711638  T
Q  252 ttt 254  Q
    |||    
T  22711639 ttt 22711641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 17095579 - 17095679
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17095579 gtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 17095678  T
Q  251 a 251  Q
    |    
T  17095679 a 17095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 19723340 - 19723443
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  19723340 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgccttggactggggcaccatcccctcaccctaaa 19723439  T
Q  251 attt 254  Q
    ||||    
T  19723440 attt 19723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 32296742 - 32296639
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  32296742 gtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccatcccctcaccctaaa 32296643  T
Q  251 attt 254  Q
    ||||    
T  32296642 attt 32296639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 36261679 - 36261778
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||    
T  36261679 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaattt 36261778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 28739674 - 28739564
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    ||||||||  ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||||    
T  28739674 agccccactagtgcctttggaggaaagtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgcagcaccatcccc 28739575  T
Q  241 tcaccctaaaa 251  Q
    |||||||||||    
T  28739574 tcaccctaaaa 28739564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 29767217 - 29767318
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||| ||||||||||||  || |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29767217 gtgcctttgaagggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 29767314  T
Q  251 attt 254  Q
    ||||    
T  29767315 attt 29767318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 4840169 - 4840272
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||||    
T  4840169 gtgcctttggagggaggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgccttggactagggcaccatcccctcaccctaaa 4840268  T
Q  251 attt 254  Q
    ||||    
T  4840269 attt 4840272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 30682858 - 30682970
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    |||||||| ||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  30682858 agccccactggtgcctttggagagagataaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttggact-gggcaccatcccc 30682956  T
Q  241 tcaccctaaaattt 254  Q
    ||||| ||||||||    
T  30682957 tcaccttaaaattt 30682970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 21355092 - 21355004
Alignment:
Q  146 caccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcacc 234  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  21355092 cacccgtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 11909509 - 11909426
Alignment:
Q  168 taaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 11909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 41553318 - 41553417
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||    
T  41553318 ctttggaggaacgtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgccttagactggagcaccatcccctcaccctaaaattt 41553417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 11610309 - 11610412
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||  |||||||| |||||| ||||||||||||| ||| |||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  11610309 gtgcctttggagaaaggtaaatataaatatctttgtaagtgctgtttaagcccgaaggtcttacttatcttggactggggcaccatcccctcaccctaaa 11610408  T
Q  251 attt 254  Q
    ||||    
T  11610409 attt 11610412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 43288105 - 43288200
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||| ||||||||||| || | |||||| |||||||||||||||| |||||||||| |||||||||||||||||||||    
T  43288105 ctttggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaa 43288200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 24475099 - 24475033
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctg 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  24475099 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttcctg 24475033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 27879620 - 27879560
Alignment:
Q  194 ctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||||| |||| ||||||||  ||||||||||||||||||||||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaattt 27879560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 28019801 - 28019741
Alignment:
Q  194 ctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||||| |||| ||||||||  ||||||||||||||||||||||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaattt 28019741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 27881091 - 27881044
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttg 198  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27881091 gtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 28021272 - 28021225
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttg 198  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28021272 gtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 17064352 - 17064455
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17064352 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 17064451  T
Q  251 attt 254  Q
    ||||    
T  17064452 attt 17064455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 20983106 - 20983006
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||| |||| |||||||||| || ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  20983106 gtgccttcggagagaggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgccttggactggggcaccatcccctcaccctaaa 20983007  T
Q  251 a 251  Q
    |    
T  20983006 a 20983006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 37976598 - 37976682
Alignment:
Q  170 aatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||||||||||||||||||| ||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||    
T  37976598 aatgtaaatacctttgtaagtgctatttgagcccgaaggtttttcctgccttgaactggggcaccatcccctcaccctaaaattt 37976682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 41910865 - 41910956
Alignment:
Q  163 ggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||||||||| || ||||||||||| |||||||||||||| |||||| ||| |||| |||||||||||||||||||||| ||||||||    
T  41910865 ggaggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaattt 41910956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 31673863 - 31673956
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaa 249  Q
    |||||||| |||| |||||||||| |||||| |||||| |||||||||| |||||| |||||| ||||||||||||||||| |||||||||||||    
T  31673863 ctttggagagaggaaaatgtaaatccctttg-aagtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcaccctaa 31673956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 5009515 - 5009417
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||| ||| ||||||||||||  ||||||| || |||||||  ||||||||||||| || |||| ||||| ||| ||||||| |||||||||||||    
T  5009515 ctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttccatgccttgaactggtgcatcatcccc-caccctaaaattt 5009417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 39162947 - 39162859
Alignment:
Q  159 ggagggaggtaaatgtaaatacctt-tgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||    |||||||  || |||||||||||||||| |||| ||||||||||    
T  39162947 ggaggaaggtaaatgtaaataccttgtgtaaatgctctttgagcc----ggtcttctgtgccttggactggggcaccgtcccatcaccctaaa 39162859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 38255614 - 38255559
Alignment:
Q  198 gagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaatt 253  Q
    |||||| |||||||||||| | |||||||||||||||||| ||||||| |||||||    
T  38255614 gagcccaaaggtcttccctattttggactggggcaccatctcctcaccttaaaatt 38255559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 18303409 - 18303343
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtctt 221  Q
    ||||||||| | ||||| |||||||| |||||||||||||||| | |||||||||||| ||| ||||    
T  18303409 ctttggaggaaagtaaacgtaaatacttttgtaagtgctctttaaacccgaaggtctttcctatctt 18303343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 35237102 - 35237059
Alignment:
Q  211 ttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||    
T  35237102 ttccctgccttggactgaggcaccatcccctcactctaaaattt 35237059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 38031257 - 38031323
Alignment:
Q  188 agtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||||||||  ||| |||||||| |||||||||||| ||||| ||| | |||||| ||||||||    
T  38031257 agtgctctttgaatccgtaggtcttctctgtcttggactagggcatcatgcactcaccttaaaattt 38031323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 21968782 - 21968815
Alignment:
Q  164 gaggtaaatgtaaatacctttgtaagtgctcttt 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  21968782 gaggtaaatgtaaatacttttgtaagtgctcttt 21968815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 8400884 - 8400987
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8400884 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 8400983  T
Q  251 attt 254  Q
    ||||    
T  8400984 attt 8400987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 50823727 - 50823830
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50823727 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 50823826  T
Q  251 attt 254  Q
    ||||    
T  50823827 attt 50823830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 50852133 - 50852030
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50852133 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 50852034  T
Q  251 attt 254  Q
    ||||    
T  50852033 attt 50852030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 7417827 - 7417930
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  7417827 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgccttggactggggcaccatcccctcaccctaaa 7417926  T
Q  251 attt 254  Q
    ||||    
T  7417927 attt 7417930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 35198795 - 35198897
Alignment:
Q  152 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  35198795 tgcctttgcagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaaa 35198894  T
Q  252 ttt 254  Q
    |||    
T  35198895 ttt 35198897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 22371832 - 22371728
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||  || ||||||||||||||||||||||||||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccctaaa 22371733  T
Q  251 attta 255  Q
    |||||    
T  22371732 attta 22371728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 55468033 - 55468129
Alignment:
Q  156 tttggagggaggtaaatgtaaatacctttgtaagtgctctttgag-cccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  55468033 tttggagggaggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaaa 55468129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 22855920 - 22856019
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  22855920 ctttggagggaggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttggactggagcaccatcccctcaccctaaaattt 22856019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 52545350 - 52545453
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||  |||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52545350 gtgcctttaaagggaggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 52545449  T
Q  251 attt 254  Q
    ||||    
T  52545450 attt 52545453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 34824585 - 34824685
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  34824585 gtgcctttgaagggaggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggccttggactggggcaccatcccctcaccctaaa 34824684  T
Q  251 a 251  Q
    |    
T  34824685 a 34824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 43334149 - 43334057
Alignment:
Q  159 ggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  43334149 ggagggaggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgccttggactggggtaccatcccctcaccctaaaa 43334057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 37330692 - 37330607
Alignment:
Q  169 aaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 37330607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 261
Target Start/End: Complemental strand, 30534987 - 30534895
Alignment:
Q  169 aaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaatttatttcat 261  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaatttctttcat 30534895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 32902162 - 32902062
Alignment:
Q  15 cagagaacgattgaaagggttttattttggtgaaatttggaattaaattttaattatggatatttttgtcat-----ggtgtaaccagaattaggtgact 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||     |||||||||||||||||||||||    
T  32902162 cagagaacgattgaaagggttttattttggtgaaattgggaattaaattttaattatggatatttttctcatttcaaggtgtaaccagaattaggtgact 32902063  T
Q  110 a 110  Q
    |    
T  32902062 a 32902062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 19872586 - 19872483
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||| |||||||  ||| ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19872586 gtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctcatcctaaa 19872487  T
Q  251 attt 254  Q
    ||||    
T  19872486 attt 19872483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 29635897 - 29636001
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcacc-atcccctcaccctaa 249  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||| || ||||||| ||||    
T  29635897 gtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcaccaattccctcacgctaa 29635996  T
Q  250 aattt 254  Q
    |||||    
T  29635997 aattt 29636001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 37454829 - 37454744
Alignment:
Q  169 aaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||  ||| || |||||||||||||||||||||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaattt 37454744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 25910738 - 25910666
Alignment:
Q  182 tttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaattt 25910666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 42876256 - 42876343
Alignment:
Q  163 ggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||| |||||||||||||||||||||| |  ||| ||||||||| ||||||||| ||||||||||| |||||||||||    
T  42876256 ggaggtaaatgtaattacctttgtaagtgctctttgaacttgaatgtcttccctatcttggactagggcaccatcctctcaccctaaa 42876343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 48078044 - 48077978
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctg 217  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  48078044 gtgcctttggaggaaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttccctg 48077978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 25589253 - 25589346
Alignment:
Q  154 cctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaatt 253  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| ||||       ||||| ||||||| |||||||| ||||||||||||||||||    
T  25589253 cctttggaaggaggtaaatgtaaataccttagtaagtgctctttgagtccga-------ccctgccttggacgggggcaccctcccctcaccctaaaatt 25589345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 30203744 - 30203657
Alignment:
Q  161 agggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||||||||||||  ||||||||| || ||||||||| ||||||| |||| ||||||| ||||||||||||||||||||| ||||||    
T  30203744 agggaggtaaatgtaaa--cctttgtaaatgttctttgagctcgaaggttttcc-tgtcttgaactggggcaccatcccctcactctaaaa 30203657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 50726096 - 50726003
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcacccta 248  Q
    ||||||||| |||||||| ||| ||| ||||||||| || ||||||  |||| |||||||||   ||||| |||||||||||||| ||||||||    
T  50726096 ctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctactttggattggggcaccatcccttcacccta 50726003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 50786752 - 50786845
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcacccta 248  Q
    ||||||||| |||||||| ||| ||| ||||||||| || ||||||  |||| |||||||||   ||||| |||||||||||||| ||||||||    
T  50786752 ctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctactttggattggggcaccatcccttcacccta 50786845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 358989 - 358940
Alignment:
Q  207 ggtcttccctgtcttggactggggcaccatcccctcaccctaaaatttat 256  Q
    ||||||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  358989 ggtcttctctgtcttagactatggcaccatcccctcaccctaaaatttat 358940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 773674 - 773709
Alignment:
Q  219 cttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||||||||||||||||||||||||| |||||    
T  773674 cttggactggggcaccatcccctcaccctagaattt 773709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 31297574 - 31297529
Alignment:
Q  204 gaaggtcttccctgtcttggactggggcaccatcccctcaccctaa 249  Q
    ||||||||||| || |||||||||||| ||||| ||||||||||||    
T  31297574 gaaggtcttccttgccttggactggggaaccatgccctcaccctaa 31297529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 38724500 - 38724459
Alignment:
Q  159 ggagggaggtaaatgtaaatacctttgtaagtgctctttgag 200  Q
    ||||||||||||| |||||| |||||||||||||| ||||||    
T  38724500 ggagggaggtaaacgtaaatccctttgtaagtgctatttgag 38724459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 39623823 - 39623892
Alignment:
Q  186 taagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattta 255  Q
    |||||| | |||||| ||||| ||||||| | |||||||||| || ||||||| ||||||||||| ||||    
T  39623823 taagtgttttttgagtccgaatgtcttccttttcttggactgtgggaccatcctctcaccctaaatttta 39623892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 17136416 - 17136519
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  17136416 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgccttggactggggcaccatcccctcaccctaaa 17136515  T
Q  251 attt 254  Q
    ||||    
T  17136516 attt 17136519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 2754153 - 2754051
Alignment:
Q  152 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2754153 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 2754054  T
Q  252 ttt 254  Q
    |||    
T  2754053 ttt 2754051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 45137073 - 45136970
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  45137073 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccctaaa 45136974  T
Q  251 attt 254  Q
    ||||    
T  45136973 attt 45136970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 36836433 - 36836329
Alignment:
Q  150 ggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaa 249  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||    
T  36836433 ggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggcaccatcccctcaccttaa 36836334  T
Q  250 aattt 254  Q
    |||||    
T  36836333 aattt 36836329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 21637926 - 21638029
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||    
T  21637926 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttggactagggcaccatcccctcaccctaaa 21638025  T
Q  251 attt 254  Q
    ||||    
T  21638026 attt 21638029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 36380235 - 36380132
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  36380235 gtgcctttggagggaggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgaggcaccatcccctcaccctaaa 36380136  T
Q  251 attt 254  Q
    ||||    
T  36380135 attt 36380132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 40156069 - 40156172
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||||    
T  40156069 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctaccttgaactggggcaccatcccctcaccataaa 40156168  T
Q  251 attt 254  Q
    ||||    
T  40156169 attt 40156172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 44650422 - 44650525
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  44650422 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgccttggaccggggcaccatcccctcaccctaaa 44650521  T
Q  251 attt 254  Q
    ||||    
T  44650522 attt 44650525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 25987765 - 25987661
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtc-ttccctgtcttggactggggcaccatcccctcaccctaa 249  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  25987765 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctgccttggtctggggcaccatcccctcaccctaa 25987666  T
Q  250 aattt 254  Q
    |||||    
T  25987665 aattt 25987661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 10745335 - 10745232
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  10745335 gtgcctttagagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttggactggggcaccatcccctcaccctaaa 10745236  T
Q  251 attt 254  Q
    ||||    
T  10745235 attt 10745232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 6672896 - 6672802
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcacc 245  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6672896 gtgcctttggagggaggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 6672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 558542 - 558439
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||  |||||| |||||||||||||||||||||||||    
T  558542 gtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctcaccctaaa 558443  T
Q  251 attt 254  Q
    ||||    
T  558442 attt 558439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 26690183 - 26690286
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||||| |  ||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26690183 gtgcttttggagggaggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaa 26690282  T
Q  251 attt 254  Q
    ||||    
T  26690283 attt 26690286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 33066623 - 33066722
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||||||| ||||||||||    
T  33066623 ctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttggactggggcaccatcccctcatcctaaaattt 33066722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 30372783 - 30372682
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |||| ||||||| ||||| |||||||||||||    
T  30372783 gtgcctttggaaggaggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttgaactggggtaccataccctcaccctaaa 30372684  T
Q  251 at 252  Q
    ||    
T  30372683 at 30372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 2357175 - 2357076
Alignment:
Q  154 cctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaatt 253  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||||  |||||||||||| || |||||||||||||||||||||||||||||||||||    
T  2357175 cctttggagggaggtaaatgtaaataccattgtaaatgct-tttgagttcgaaggtcttccatgccttggactggggcaccatcccctcaccctaaaatt 2357077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 21487181 - 21487281
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccat-cccctcaccctaaaatt 253  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| ||||||| |||||||||    
T  21487181 ctttggagggaggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatccccctcatcctaaaatt 21487280  T
Q  254 t 254  Q
    |    
T  21487281 t 21487281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 3200910 - 3201013
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||| ||| ||| ||||||||||||||| |||| |||||||    
T  3200910 gtgcctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttagactggggcaccatctcctcgccctaaa 3201009  T
Q  251 attt 254  Q
    ||||    
T  3201010 attt 3201013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 5039449 - 5039552
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||| |||||    
T  5039449 gtgcttttagagggaggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctaccttggactagggcaccatcccctcactctaaa 5039548  T
Q  251 attt 254  Q
    ||||    
T  5039549 attt 5039552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 7860249 - 7860146
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| | ||| ||| ||||||||| |||| ||||||||| |||||||    
T  7860249 gtgcctttggagggaggtaaatgtacatacatttgtaagtgttctttgagcccgaagattttctctgccttggactgaggcatcatcccctctccctaaa 7860150  T
Q  251 attt 254  Q
    ||||    
T  7860149 attt 7860146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 13047252 - 13047155
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||||||||||||| ||| ||||||   ||||||||||||||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||    
T  13047252 ctttggagggaggtaaatataattacctt---aagtgctctttgagcccaaagatcttccctgccttggactggagcaccatcccctcaccctaaaattt 13047156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 4553657 - 4553561
Alignment:
Q  156 tttggagg-gaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||| ||||||||| ||||||| ||||||||| ||||||||| ||| |||||||| ||||||| |||||||||||||||||||||| ||||||    
T  4553657 tttggaggagaggtaaatataaatacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcactctaaaa 4553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 2098875 - 2098826
Alignment:
Q  205 aaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2098875 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 2098826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 30477280 - 30477240
Alignment:
Q  160 gagggaggtaaatgtaaatacctttgtaagtgctctttgag 200  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  30477280 gagggaggtaaatctaaatacctttgtaagttctctttgag 30477240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 20961510 - 20961551
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgc 192  Q
    ||||| |||||||||||||||||||||| | |||||||||||    
T  20961510 gtgcccttggagggaggtaaatgtaaatccatttgtaagtgc 20961551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 46494511 - 46494401
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  46494511 agccccactagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcccc 46494412  T
Q  241 tcaccctaaaa 251  Q
    |||||||||||    
T  46494411 tcaccctaaaa 46494401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 51066522 - 51066622
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51066522 gtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 51066621  T
Q  251 a 251  Q
    |    
T  51066622 a 51066622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 7173688 - 7173585
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  7173688 gtgcctttggaaggaggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgcgttggactggggcaccatcccctcaccctaaa 7173589  T
Q  251 attt 254  Q
    ||||    
T  7173588 attt 7173585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 29576444 - 29576547
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaa 29576543  T
Q  251 attt 254  Q
    ||||    
T  29576544 attt 29576547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 36192560 - 36192673
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    ||||||||  |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  36192560 agccccactagtgcctttggagggaggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttggactggggcaccatcccc 36192659  T
Q  241 tcaccctaaaattt 254  Q
    ||||||||||||||    
T  36192660 tcaccctaaaattt 36192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 51714078 - 51713965
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    ||||||||  ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  51714078 agccccactagtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgctttgaactggggcaccatcccc 51713979  T
Q  241 tcaccctaaaattt 254  Q
    ||||||||||||||    
T  51713978 tcaccctaaaattt 51713965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 30970487 - 30970384
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  30970487 gtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctaccttagactggggcaccatcccctcaccctaaa 30970388  T
Q  251 attt 254  Q
    ||||    
T  30970387 attt 30970384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 55231716 - 55231819
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||    
T  55231716 gtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccctaaa 55231815  T
Q  251 attt 254  Q
    ||||    
T  55231816 attt 55231819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 32139197 - 32139292
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  32139197 ctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgccttggactggggcaccatcccttcaccctaaa 32139292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 2570229 - 2570333
Alignment:
Q  150 ggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaa 249  Q
    ||||||||||||||||||||||| |||||| | || ||| || |||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  2570229 ggtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgccttggactggggcaccatcccctcaccctaa 2570328  T
Q  250 aattt 254  Q
    |||||    
T  2570329 aattt 2570333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 22304175 - 22304091
Alignment:
Q  170 aatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  22304175 aatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaattt 22304091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 41523430 - 41523526
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| |||| ||||||||| ||| |||||||    
T  41523430 ctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccctatcttggattgggacaccatcccttcatcctaaaa 41523526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 39863881 - 39863778
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||  ||||||||| | ||| ||||||||||||||||    
T  39863881 gtgcctttggagggaagtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctaccttggactgagacactatcccctcaccctaaa 39863782  T
Q  251 attt 254  Q
    ||||    
T  39863781 attt 39863778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 676766 - 676860
Alignment:
Q  160 gagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||| ||| ||||||||    
T  676766 gagggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatccccttaccttaaaattt 676860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 8740477 - 8740550
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttgga 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  8740477 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgccttgga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 50905777 - 50905880
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||| ||||||||||||| || ||||||| |||||||||||| ||||||||||||| || |||| |||||||||||||||  ||||||||||    
T  50905777 gtgcctttggagagaggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgccttgaactggggcaccatcctttcaccctaaa 50905876  T
Q  251 attt 254  Q
    ||||    
T  50905877 attt 50905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 47627106 - 47626993
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    ||||||||  ||||||||| |||||||||||||||||||||| | ||| | |||||||| | ||||||||||||||| ||||||||||  ||||||| ||    
T  47627106 agccccactagtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttccctgccttggactggaacaccatctcc 47627007  T
Q  241 tcaccctaaaattt 254  Q
    ||||||||||||||    
T  47627006 tcaccctaaaattt 47626993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 51279127 - 51279035
Alignment:
Q  160 gagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaat 252  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||   |||||| |  ||||||||||||||||||||||||    
T  51279127 gagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggcaccatcccctcaccctaaaat 51279035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 4080651 - 4080552
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||| | ||| |||||| |||||||||| ||| ||||||||||||| || ||||||||    
T  4080651 ctttggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctcgccttaaaattt 4080552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 2294813 - 2294719
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||| |||||||||||| |||      ||||| || ||||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||    
T  2294813 gtgcctttggaggaaggtaaatgtaattac------aagtgttcgttgagcccgaaagtcttcactgccttagactggggcaccatcccctcaccctaaa 2294720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 22423408 - 22423471
Alignment:
Q  154 cctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctg 217  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| |  |||||||||||||||    
T  22423408 cctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccctg 22423471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 50399739 - 50399640
Alignment:
Q  157 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaatttat 256  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||  || |||||| ||  ||||||   ||||| ||||| ||||||||||| |||||    
T  50399739 ttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcctaaatgtcttctctaccttggataagggcatcatccgctcaccctaaattttat 50399640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 23084530 - 23084468
Alignment:
Q  189 gtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||||||| |||||||||||||||  |||| ||||||| |||||| |||||||||||||    
T  23084530 gtgctctttgagtccgaaggtcttccctaccttgaactggggtaccatctcctcaccctaaaa 23084468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 37990663 - 37990599
Alignment:
Q  186 taagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||| ||||||||||| |||| ||||||||  |||||||||||||||||| |||||| ||||||    
T  37990663 taagtactctttgagcctgaagatcttccctaccttggactggggcaccattccctcatcctaaa 37990599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 51066240 - 51066283
Alignment:
Q  208 gtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  51066240 gtcttccctgccttgaactggggcaccatcccctcaccctaaaa 51066283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 28202643 - 28202598
Alignment:
Q  201 cccgaaggtcttccctgtcttggactggggcaccatcccctcaccc 246  Q
    |||||||||||| |||||||| |||||| |||||||||||||||||    
T  28202643 cccgaaggtctttcctgtcttagactggagcaccatcccctcaccc 28202598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 40012548 - 40012640
Alignment:
Q  157 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||| |  ||||||||||||   ||||||| || |||| ||| ||||| |||||    
T  40012548 ttggagggaggtaaatgtaaatccctttgtgagtgctc-ttgagtcataaggtcttccctacgttggactaggacaccgtcctctcacactaaa 40012640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 28202701 - 28202782
Alignment:
Q  167 gtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcacccta 248  Q
    |||||||||||| | |||||||||| ||| |||||| |||| |||||| || |||  | ||  |||||||||||||||||||    
T  28202701 gtaaatgtaaatgcatttgtaagtgttctatgagcctgaagatcttccttgcctttaattgatgcaccatcccctcacccta 28202782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 22024132 - 22024237
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  22024132 gtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaa 22024231  T
Q  251 atttat 256  Q
    ||||||    
T  22024232 atttat 22024237  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 137 - 254
Target Start/End: Original strand, 45324021 - 45324138
Alignment:
Q  137 ttccagccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccat 236  Q
    |||||||||| |  |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  45324021 ttccagccccgctagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgctttggactggggcaccat 45324120  T
Q  237 cccctcaccctaaaattt 254  Q
    ||||||||||||||||||    
T  45324121 cccctcaccctaaaattt 45324138  T

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Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 30054545 - 30054445
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30054545 gtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 30054446  T
Q  251 a 251  Q
    |    
T  30054445 a 30054445  T

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Target: chr1; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 141 - 253
Target Start/End: Complemental strand, 30370173 - 30370061
Alignment:
Q  141 agccccaccggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccc 240  Q
    ||||||||  ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30370173 agccccactagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccc 30370074  T
Q  241 tcaccctaaaatt 253  Q
    ||||| |||||||    
T  30370073 tcaccttaaaatt 30370061  T

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Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 14498183 - 14498079
Alignment:
Q  150 ggtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaa 249  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||    
T  14498183 ggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccctaa 14498084  T
Q  250 aattt 254  Q
    |||||    
T  14498083 aattt 14498079  T

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Target: chr1; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 4573412 - 4573511
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaattt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  4573412 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgttttggactgaggcactatcccctcaccctaaaattt 4573511  T

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Target: chr1; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 21090144 - 21090244
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  21090144 gtgccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaa 21090243  T
Q  251 a 251  Q
    |    
T  21090244 a 21090244  T

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Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 12025210 - 12025313
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    ||||||||||||| |||||||||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  12025210 gtgcctttggaggaaggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttggactggggcaccaccccctcaccctaaa 12025309  T
Q  251 attt 254  Q
    ||||    
T  12025310 attt 12025313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 30850939 - 30850841
Alignment:
Q  155 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaatt 253  Q
    |||||||||||||||||| ||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30850939 ctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgtcttggactggggcaccatcccctcaccctaaaatt 30850841  T

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Target: chr1; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 20014490 - 20014590
Alignment:
Q  154 cctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaatt 253  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  20014490 cctttggagggaggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaatt 20014589  T
Q  254 t 254  Q
    |    
T  20014590 t 20014590  T

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Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 33762643 - 33762540
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||| |||||||| |||||||| |||||||||||||| | |||||||||||| || ||||||| |||||||||||||| |||||||||||||||||    
T  33762643 gtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcaccctaaa 33762544  T
Q  251 attt 254  Q
    ||||    
T  33762543 attt 33762540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 35371833 - 35371754
Alignment:
Q  166 ggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcacc 245  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcacc 35371754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 33763357 - 33763254
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||| |||||||| |||||||| |||||||||||||| | |||||||||||| || ||||||| |||| ||||||||| |||||||||||||||||    
T  33763357 gtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatcatcccctcaccctaaa 33763258  T
Q  251 attt 254  Q
    ||||    
T  33763257 attt 33763254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 35618034 - 35618104
Alignment:
Q  181 ctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||    
T  35618034 ctttgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaa 35618104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 44438652 - 44438553
Alignment:
Q  152 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaa 251  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||| |   ||||||||||||||| |||| ||||||| ||||||||||| || |||||    
T  44438652 tgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgccttgaactggggtaccatcccctcgccttaaaa 44438553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 17015192 - 17015254
Alignment:
Q  194 ctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaaatttat 256  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaatttat 17015254  T

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Target: scaffold0021 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 107794 - 107692
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggggcaccatcccctcaccctaaa 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  107794 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttggactggggcaccatcccctca-cctaaa 107696  T
Q  251 attt 254  Q
    ||||    
T  107695 attt 107692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 7072 - 6994
Alignment:
Q  151 gtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactggg 229  Q
    |||| |||||||||| |||||||||| |||||||| ||||| |||||||| |||||||||||||||  |||||||||||    
T  7072 gtgcgtttggagggaagtaaatgtaattacctttgcaagtgttctttgagtccgaaggtcttccctaccttggactggg 6994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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