View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_3 (Length: 692)
Name: NF18168_low_3
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 146 - 554
Target Start/End: Original strand, 7131944 - 7132351
Alignment:
| Q |
146 |
ctatcaagtatcaaccctcttttctagtctagggatgataacaataaacaatcaaatcctaaatactatttcatctttggtttgtctccaaagatgaaat |
245 |
Q |
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| T |
7131944 |
ctatcaagtatcaaccctcttttctagtctagggatgataacaataaacaatcaaatcctaaataccatttcatctttggtttgtctccaaagatgaaat |
7132043 |
T |
|
| Q |
246 |
ttgaatatttgtttggcttattgcttgaatctgttacccatatcaagtttgatgagtcttgctaacaagtgtttcaactctcaaggatacatgttaagga |
345 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
7132044 |
ttgaatatttgtttggcttattgtttgaatctgttacccatatcaagtttgatgagtctt-ctaacaagtgtctcaactctcaaggatacatgttaagga |
7132142 |
T |
|
| Q |
346 |
atcaaatatataaatttatcttaaaaattgtgtatttaatactttggagtttataaaatgttcttttaaacccaaattctaagataaactttctattttt |
445 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
7132143 |
atcgaatatataaatttatcttgaaaattgtgtatttaatactttggagtttataaaatgtacttttaaacccaaattctaagataaagtttctattttt |
7132242 |
T |
|
| Q |
446 |
gattcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatgaaagctatatacttttaag |
545 |
Q |
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| T |
7132243 |
gattcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatgaaagctatatacttttaag |
7132342 |
T |
|
| Q |
546 |
ttacgaaaa |
554 |
Q |
| |
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||||||||| |
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| T |
7132343 |
ttacgaaaa |
7132351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 602 - 687
Target Start/End: Original strand, 7132359 - 7132444
Alignment:
| Q |
602 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgctact |
687 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7132359 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgttact |
7132444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7131918 - 7131952
Alignment:
| Q |
1 |
ttgggatattgaagacaatgatgaggctatcaagt |
35 |
Q |
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| T |
7131918 |
ttgggatattgaagacaatgatgaggctatcaagt |
7131952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7123525 - 7123570
Alignment:
| Q |
1 |
ttgggatattgaagacaatgatgaggctatcaagtcatgaccagat |
46 |
Q |
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| T |
7123525 |
ttgggatattgaagaagatgatgaagctgtcaagtcatgaccagat |
7123570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 334 - 479
Target Start/End: Complemental strand, 44744654 - 44744509
Alignment:
| Q |
334 |
acatgttaaggaatcaaatatataaattt-atcttaaaaattgtgtatttaatactttggagtttataaaatgttcttttaaacccaaattctaagataa |
432 |
Q |
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|||||||||||| |||| ||| |||||| ||||| |||||||||||||||| ||||| |||||| ||| ||||||||||||| ||||||| ||||||| |
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| T |
44744654 |
acatgttaaggacgcaaagatagaaattttatcttggaaattgtgtatttaattctttgaagttta-aaattgttcttttaaacacaaattccaagataa |
44744556 |
T |
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| Q |
433 |
actttctatttttgattcattaacatgtgttcttagggtatttgtta |
479 |
Q |
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| T |
44744555 |
agtttctatctttggtttcttaacatgtgcccttagggcacttgtta |
44744509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 470
Target Start/End: Complemental strand, 38430166 - 38430029
Alignment:
| Q |
334 |
acatgttaaggaatcaaatatataaat-ttatcttaaaaattgtgtatttaatactttggagtttataaaatgttcttttaaacccaaattctaagataa |
432 |
Q |
| |
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|||| |||||||| ||||||| |||| || |||| ||||||||||||||||| ||||| |||||| ||| | ||||||| ||| |||||| ||||||| |
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| T |
38430166 |
acatattaaggaaccaaatattgaaatattctcttgaaaattgtgtatttaattctttgaagtttaaaaattattcttttgaacataaattcgaagataa |
38430067 |
T |
|
| Q |
433 |
actttctatttttgattcattaacatgtgttcttaggg |
470 |
Q |
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| T |
38430066 |
tatttctatctttggttccataacatgtgcccttaggg |
38430029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 34390642 - 34390581
Alignment:
| Q |
394 |
gtttataaaatgttcttttaaacccaaattctaagataaactttctatttttgattcattaa |
455 |
Q |
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||||| ||| ||||||||||||| |||||||||||||||| ||| ||| |||||||| |||| |
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| T |
34390642 |
gtttaaaaattgttcttttaaacacaaattctaagataaattttttatctttgattccttaa |
34390581 |
T |
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