View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18168_low_31 (Length: 246)
Name: NF18168_low_31
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_31 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold1384 (1 HSPs) |
| | |
|
| [»] scaffold1183 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 52806539 - 52806765
Alignment:
| Q |
20 |
tatgattctcactagttgaaggcgaacatggagatgaaaacacaccaccaccagaactattataacatttaaaaacagaattagaaggtgagaaagagtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52806539 |
tatgattctcactagttgaaggcgaacatggagatgaaaacacaccaccaccagaactattataacatttaaaaacagaattagaaggtgagaaagagtc |
52806638 |
T |
|
| Q |
120 |
ttctaaattgttcttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaagc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52806639 |
ttctaaattgttcttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaagc |
52806738 |
T |
|
| Q |
220 |
tcaactttgacagtaagaacagtttgc |
246 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
52806739 |
tcaactttgacagtaagaacagtttgc |
52806765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 53818251 - 53818169
Alignment:
| Q |
156 |
agcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaagctcaactttgacagtaagaa |
238 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| || ||||| || || ||||| | ||||||||||||| ||||| |
|
|
| T |
53818251 |
agcttctctcatgaccctactaacactaggatcatcaagaattgatatgatgagttgttccaattcaactttgacagcaagaa |
53818169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 40588529 - 40588613
Alignment:
| Q |
133 |
ttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaa |
217 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || || |||||||||| |
|
|
| T |
40588529 |
ttaacaagagtgctagagaaaccagcttctctcataactctactaacacttggatcatcaagtatagagattatgagctgttcaa |
40588613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 25118339 - 25118305
Alignment:
| Q |
157 |
gcttctctcataaccctactaacactaggatcatc |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25118339 |
gcttctctcataaccctactaacactaggatcatc |
25118305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 16611558 - 16611444
Alignment:
| Q |
113 |
aagagtcttctaaattgttcttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagatataataagctg |
212 |
Q |
| |
|
|||||| ||| |||||||| |||||| || |||||| || ||||||||||||||||| ||||||||| ||| |||||||| || || | ||||||||| |
|
|
| T |
16611558 |
aagagttttccaaattgtttttaacagaaggactagaaaaaccagcttctctcataactctactaacagaagggtcatcaagaatggaaagaataagctg |
16611459 |
T |
|
| Q |
213 |
ttcaagctcaacttt |
227 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
16611458 |
atcaagttcaacttt |
16611444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1384 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1384
Description:
Target: scaffold1384; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 682 - 766
Alignment:
| Q |
133 |
ttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaa |
217 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||| ||||||| || ||| |||||| | |||||||| || || ||||||| |
|
|
| T |
682 |
ttaacaagtgtaccagagaaaccagcttctctcataactctactaatacaagggtcatcaggaatagatattattagttgttcaa |
766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1183 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1183
Description:
Target: scaffold1183; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 1003 - 936
Alignment:
| Q |
133 |
ttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtataga |
200 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||| ||||||| || ||| |||| ||| ||||| |
|
|
| T |
1003 |
ttaacaagtgtactcgagaaaccagcttctctcataactctactaatacaagggtcattaagaataga |
936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University