View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18168_low_34 (Length: 225)

Name: NF18168_low_34
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18168_low_34
NF18168_low_34
[»] chr7 (9 HSPs)
chr7 (10-225)||(4195635-4195847)
chr7 (10-225)||(4233384-4233596)
chr7 (38-225)||(4250437-4250624)
chr7 (10-223)||(4188746-4188956)
chr7 (25-211)||(4191898-4192084)
chr7 (61-225)||(4094835-4094999)
chr7 (61-225)||(4121860-4122024)
chr7 (54-221)||(4241213-4241380)
chr7 (95-225)||(4102417-4102547)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 4195635 - 4195847
Alignment:
Q  10 catcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctccc 109  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4195635 catcatcaacccaaaaaaca---acaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctccc 4195731  T
Q  110 aaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4195732 aaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggt 4195831  T
Q  210 aaactcgtttggcctt 225  Q
    ||| ||||||||||||    
T  4195832 aaaatcgtttggcctt 4195847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 4233384 - 4233596
Alignment:
Q  10 catcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctccc 109  Q
    |||||||||| |||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  4233384 catcatcaactcaaaaaaca---acaacccctcttacttactttgacatattttggctaaggttccatccagtagaacgtgttttcttctacgccctccc 4233480  T
Q  110 aaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggt 209  Q
    |||||||||||||||| |||||||||| ||| | || |||||||||||||||||||||||| |||||||||||||| |  ||||||| ||||||||||||    
T  4233481 aaattcacattcacacccttctttcttcttcaagaagcttgttccaattctcaaatcttcactctctttaaccctcaaggactttctccctttagctggt 4233580  T
Q  210 aaactcgtttggcctt 225  Q
    ||  ||||||||||||    
T  4233581 aacatcgtttggcctt 4233596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 4250437 - 4250624
Alignment:
Q  38 ccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttcttt 137  Q
    ||||||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||     
T  4250437 ccctcttactttcttcgacatattttggctaaggttccatccagtagaacgagttttcttctacaccctcccaaattcacaatcacacccttctttcttc 4250536  T
Q  138 ttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt 225  Q
    || ||||   ||||||||| ||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||    
T  4250537 tttcaaacgattgttccaaatctcaaatcatcactctctttaaccctccaacattttctccctttagctggtaacatcgtttggcctt 4250624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 4188746 - 4188956
Alignment:
Q  10 catcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctccc 109  Q
    |||||||||||||||   | |||||||  ||| | |||| ||| |||||||||||| | | |||||||||  |||||||  | ||||| |||||||||||    
T  4188746 catcatcaacccaaa---ctacaacaattcctttcactttcttcgacatattttggataaagttccatcctatagaacgaatcttcttttacaccctccc 4188842  T
Q  110 aaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggt 209  Q
    ||||||||| |||||| |||||||||| || |||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  4188843 aaattcacaatcacacccttctttcttctttcaaaaactagttccaattctcagatcatcactctctttaaccctccaacactttctccctttagctggt 4188942  T
Q  210 aaactcgtttggcc 223  Q
    ||| | ||||||||    
T  4188943 aaaattgtttggcc 4188956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 4191898 - 4192084
Alignment:
Q  25 aaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcaca 124  Q
    |||| ||||||  |||||| |||| ||| |||||||| ||||| | | |  |||| || |||||||||||||||||||||||||||| |||||| |||||    
T  4191898 aaacgacaacattccctctcactttcttcgacatattatggctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagttcacaatcaca 4191997  T
Q  125 cacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaa 211  Q
    | |||||||||| |||||||| |||||| |||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||    
T  4191998 cccttctttcttcttccaaaagcttgttacaattctcaaatcttcaccctctttaaccctcaaacactttctccctttagctggtaa 4192084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 4094835 - 4094999
Alignment:
Q  61 tttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct 160  Q
    ||||||| || || ||||||||||||||| ||||||||||||||||||||| |||||| |||||| || |||| || ||| |||| ||||||||||  ||    
T  4094835 tttggctaagatttcatccggtagaacgtattttcttctacaccctcccaagttcacactcacaccctacttttttcttcgaaaatcttgttccaaaact 4094934  T
Q  161 caaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt 225  Q
    |||||||||| |||||||||| || |||||||| || ||||||||||||||  ||||||||||||    
T  4094935 caaatcttcactctctttaactctacaacacttcctccctttagctggtaacatcgtttggcctt 4094999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 4121860 - 4122024
Alignment:
Q  61 tttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct 160  Q
    ||||||| ||||| ||||| || |||||| | |||||||||||||||||||||||||| |||||| ||||||||||| |  |||| ||||||||||  ||    
T  4121860 tttggctaaggtttcatccagttgaacgtatcttcttctacaccctcccaaattcacaatcacacccttctttctttgttgaaaaccttgttccaaaact 4121959  T
Q  161 caaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt 225  Q
    |||||||||| ||||||||||||||||| | || |  ||||||||||||||  ||||||||||||    
T  4121960 caaatcttcactctctttaaccctccaaaaattcccacctttagctggtaacatcgtttggcctt 4122024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 4241213 - 4241380
Alignment:
Q  54 gacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttc 153  Q
    |||||||||||||| |||||||||||  |||||    | || ||||||||||||||||||||||| ||| ||||||| ||||| || |||| | ||||||    
T  4241213 gacatattttggctaaggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttc 4241312  T
Q  154 caattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttgg 221  Q
    ||| ||| ||||||||| | ||||| |||||||||||||||||||||||||| |||||  ||||||||    
T  4241313 caaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg 4241380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 4102417 - 4102547
Alignment:
Q  95 cttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacacttt 194  Q
    |||||||||||||||||||||||| |||||| |||||| ||||||  |||| ||||||||||  ||||||| |||| ||||||||||||||||| ||||     
T  4102417 cttctacaccctcccaaattcacaatcacacccttcttacttttttgaaaaccttgttccaaaactcaaatattcactctctttaaccctccaaaacttc 4102516  T
Q  195 cttcctttagctggtaaactcgtttggcctt 225  Q
    || ||||||||||||||  ||||||||||||    
T  4102517 ctccctttagctggtaacatcgtttggcctt 4102547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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