View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_36 (Length: 217)
Name: NF18168_low_36
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 4195661 - 4195847
Alignment:
| Q |
18 |
cctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195661 |
cctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttt |
4195760 |
T |
|
| Q |
118 |
tccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4195761 |
tccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaaatcgtttggcctt |
4195847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 4233410 - 4233597
Alignment:
| Q |
18 |
cctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttt |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | |
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| T |
4233410 |
cctcttacttactttgacatattttggctaaggttccatccagtagaacgtgttttcttctacgccctcccaaattcacattcacacccttctttcttct |
4233509 |
T |
|
| Q |
118 |
tccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggccttt |
205 |
Q |
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|| | || |||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||||| |
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| T |
4233510 |
tcaagaagcttgttccaattctcaaatcttcactctctttaaccctcaaggactttctccctttagctggtaacatcgtttggccttt |
4233597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 4250438 - 4250624
Alignment:
| Q |
18 |
cctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttt |
117 |
Q |
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|||||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| | |
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| T |
4250438 |
cctcttactttcttcgacatattttggctaaggttccatccagtagaacgagttttcttctacaccctcccaaattcacaatcacacccttctttcttct |
4250537 |
T |
|
| Q |
118 |
tccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
204 |
Q |
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| |||| ||||||||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
4250538 |
ttcaaacgattgttccaaatctcaaatcatcactctctttaaccctccaacattttctccctttagctggtaacatcgtttggcctt |
4250624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 4188778 - 4188956
Alignment:
| Q |
24 |
acttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaa |
123 |
Q |
| |
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|||| ||| |||||||||||| | | ||||||||| ||||||| | ||||| |||||||||||||||||||| |||||| |||||||||| || |||| |
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| T |
4188778 |
actttcttcgacatattttggataaagttccatcctatagaacgaatcttcttttacaccctcccaaattcacaatcacacccttctttcttctttcaaa |
4188877 |
T |
|
| Q |
124 |
aacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcc |
202 |
Q |
| |
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|||| ||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
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| T |
4188878 |
aactagttccaattctcagatcatcactctctttaaccctccaacactttctccctttagctggtaaaattgtttggcc |
4188956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 4191912 - 4192084
Alignment:
| Q |
18 |
cctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttt |
117 |
Q |
| |
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||||| |||| ||| |||||||| ||||| | | | |||| || |||||||||||||||||||||||||||| |||||| |||||| |||||||||| | |
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| T |
4191912 |
cctctcactttcttcgacatattatggctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagttcacaatcacacccttctttcttct |
4192011 |
T |
|
| Q |
118 |
tccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaa |
190 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
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| T |
4192012 |
tccaaaagcttgttacaattctcaaatcttcaccctctttaaccctcaaacactttctccctttagctggtaa |
4192084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 4094835 - 4094999
Alignment:
| Q |
40 |
tttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct |
139 |
Q |
| |
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||||||| || || ||||||||||||||| ||||||||||||||||||||| |||||| |||||| || |||| || ||| |||| |||||||||| || |
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| T |
4094835 |
tttggctaagatttcatccggtagaacgtattttcttctacaccctcccaagttcacactcacaccctacttttttcttcgaaaatcttgttccaaaact |
4094934 |
T |
|
| Q |
140 |
caaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
204 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| || |||||||||||||| |||||||||||| |
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| T |
4094935 |
caaatcttcactctctttaactctacaacacttcctccctttagctggtaacatcgtttggcctt |
4094999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 4121860 - 4122024
Alignment:
| Q |
40 |
tttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct |
139 |
Q |
| |
|
||||||| ||||| ||||| || |||||| | |||||||||||||||||||||||||| |||||| ||||||||||| | |||| |||||||||| || |
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| T |
4121860 |
tttggctaaggtttcatccagttgaacgtatcttcttctacaccctcccaaattcacaatcacacccttctttctttgttgaaaaccttgttccaaaact |
4121959 |
T |
|
| Q |
140 |
caaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
204 |
Q |
| |
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|||||||||| ||||||||||||||||| | || | |||||||||||||| |||||||||||| |
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| T |
4121960 |
caaatcttcactctctttaaccctccaaaaattcccacctttagctggtaacatcgtttggcctt |
4122024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 4102417 - 4102548
Alignment:
| Q |
74 |
cttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacacttt |
173 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||| |||||| |||| |||||||||| ||||||| |||| ||||||||||||||||| |||| |
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| T |
4102417 |
cttctacaccctcccaaattcacaatcacacccttcttacttttttgaaaaccttgttccaaaactcaaatattcactctctttaaccctccaaaacttc |
4102516 |
T |
|
| Q |
174 |
cttcctttagctggtaaactcgtttggccttt |
205 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |
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| T |
4102517 |
ctccctttagctggtaacatcgtttggccttt |
4102548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 4241213 - 4241380
Alignment:
| Q |
33 |
gacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttc |
132 |
Q |
| |
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|||||||||||||| ||||||||||| ||||| | || ||||||||||||||||||||||| ||| ||||||| ||||| || |||| | |||||| |
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| T |
4241213 |
gacatattttggctaaggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttc |
4241312 |
T |
|
| Q |
133 |
caattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttgg |
200 |
Q |
| |
|
||| ||| ||||||||| | ||||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
4241313 |
caaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg |
4241380 |
T |
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Back To:
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