View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18168_low_38 (Length: 204)
Name: NF18168_low_38
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 50909946 - 50909776
Alignment:
| Q |
18 |
tttctaactcttgttccaacaatactacatagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50909946 |
tttctaactcttgttccaacaatactacatagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgta |
50909847 |
T |
|
| Q |
118 |
ttagagtagccatattttcaaatttactcacactttagcaagaccttgcgtagcgtaggtgtacttttgtt |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50909846 |
ttagagtagccatattttcaaatttactcacactttagcaagagcttgcgtagcgtaggtgtacttttgtt |
50909776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 43548637 - 43548535
Alignment:
| Q |
47 |
tagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactc |
146 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||| |||||| || ||||||||||||| | |||||||||||| || ||||||| |||||||||| |
|
|
| T |
43548637 |
tagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactc |
43548538 |
T |
|
| Q |
147 |
aca |
149 |
Q |
| |
|
||| |
|
|
| T |
43548537 |
aca |
43548535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 29368852 - 29368771
Alignment:
| Q |
67 |
attacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactcaca |
149 |
Q |
| |
|
||||||| |||||||||||||| | |||||||| ||||||| ||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
29368852 |
attacttcatcctctttttgaagtgttaccatgtattattgtgaaattgtattacagtagccat-ttttaaaatttactcaca |
29368771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University