View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_39 (Length: 201)
Name: NF18168_low_39
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 3058683 - 3058848
Alignment:
| Q |
17 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3058683 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
3058782 |
T |
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| Q |
117 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagatacc |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3058783 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagatacc |
3058848 |
T |
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Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 17443517 - 17443352
Alignment:
| Q |
17 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443517 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
17443418 |
T |
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| Q |
117 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagatacc |
182 |
Q |
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| T |
17443417 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagatacc |
17443352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 4873326 - 4873491
Alignment:
| Q |
17 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873326 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
4873425 |
T |
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| Q |
117 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagatacc |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873426 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagatacc |
4873491 |
T |
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