View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_4 (Length: 691)
Name: NF18168_low_4
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 635
Target Start/End: Original strand, 36778460 - 36779075
Alignment:
| Q |
14 |
atcaggtgcctttgaaagtttcggttttggtgtggagattgcttcgtgtcagattgccaactaagtcaaatttggcaactcgtggcactattccagctga |
113 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
36778460 |
atcaggtgcctttgaaagtttcggttttggcgtggagattgcttcgtgtcagattgccaactaagtcaaatttggcaactcgtggcactgttctagctga |
36778559 |
T |
|
| Q |
114 |
aaaatcaactatgtgtttccggttgcggtcaagttgaatatgcgcatcatttattcttaaattgtggcaccttcagctctctttggagtttggttgttag |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
36778560 |
aaaatcaactatgtgtttccggttgcggtcaagttgaatatgcgcatcatttattcttaaattgtggcaccttcagctctctttgg-------tcgttag |
36778652 |
T |
|
| Q |
214 |
ttcggcattggattggcttttcgggcatcgattctcaggttcttccgtatcattttatccaatttatgcaacaggtggtctgaaagcgcggtgctaattt |
313 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36778653 |
ttcggcattcgattggcttttcgggcatcgattctcaggttcttccatatcattttatccaatttatgcaacaggtggtctgaaagcgcggtgctaattt |
36778752 |
T |
|
| Q |
314 |
ttacagttgagttggctactcggtgtgtggatggtgttgaatgagggtaataaaagattatttaagaatttagagtgtttcataccacaattgttggata |
413 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
36778753 |
ttacagttgagttggctactcggtatgtggatggtgttgaatgagggtaataacagattatgtaagaatttagagtgtttcataccacagttgttggata |
36778852 |
T |
|
| Q |
414 |
aagtaaaatgttattccttgtcgtggatgaaagcagataaagccaattttatgtattgctttcagcatcagtggtagagctcctctacttgtttgagcat |
513 |
Q |
| |
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||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
36778853 |
aagtaaaatattattccttgctgtggttgaaagcagataaagccaattttatgtattgctttcagcattagtggtcgagctcctctacttgtttgagcat |
36778952 |
T |
|
| Q |
514 |
cggctcatttttgttaatctttagcttagtgtttggagtacattattattgtcggtgttaatataatctatctaatttttagaatcga--gaagttaacc |
611 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||||| || ||| || ||| |||||| |
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| T |
36778953 |
cggctcatttttgttaatctttggcttagtgtttgtagtacgtcattattgtcggtgttaatataatctatctaatcttgtaaattgaacgaacttaacc |
36779052 |
T |
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| Q |
612 |
accaaaaagagagggtacgtcctt |
635 |
Q |
| |
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|||||||||||| ||||||||||| |
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| T |
36779053 |
accaaaaagaga-ggtacgtcctt |
36779075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 336 - 417
Target Start/End: Original strand, 27864028 - 27864109
Alignment:
| Q |
336 |
gtgtgtggatggtgttgaatgagggtaataaaagattatttaagaatttagagtgtttcataccacaattgttggataaagt |
417 |
Q |
| |
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|||||||||| |||| |||||| |||||| ||| |||||||||||||||| |||| ||| ||||||||| |||||||||| |
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| T |
27864028 |
gtgtgtggatagtgtggaatgaacctaataatagactatttaagaatttagaatgttccatgccacaattggtggataaagt |
27864109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 45 - 448
Target Start/End: Original strand, 19249559 - 19249959
Alignment:
| Q |
45 |
gtggagattgcttcgtgtcagattgccaactaagtcaaatttggcaactcgtggcactattccagctgaaaaatcaactatgtgtttccggttgcggtca |
144 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||| ||| ||||| |||| ||||||||||||||||||||| |
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| T |
19249559 |
gtggagattgcttcgtgacagattgccaactaagtcaaatttggcatctcgtggcattgttcatgct-aaaaaccaaccatgtgtttccggttgcggtca |
19249657 |
T |
|
| Q |
145 |
agttgaatatgcgcatcatttattcttaaattgtggcaccttcagctctctttggagtttggttgttagttcggcattggattggcttttcgggcatcga |
244 |
Q |
| |
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||||||||||| || |||||||||||||||| ||||| |||| ||||| |||||| |||||||||||||||||| ||||| ||||| | || |
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| T |
19249658 |
agttgaatatggtcaggatttattcttaaattgcggcacattcaactctc-------tttggtccttagttcggcattggattagctttgcgggcgtgga |
19249750 |
T |
|
| Q |
245 |
ttctcaggttcttccgtatcattttatccaattt----atgcaacaggtggtctgaaagcgcgg--tgctaatttttacagttgagttggctactcggtg |
338 |
Q |
| |
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|||||| |||||| | ||||||||||||||||| ||||||||||||||||||||| |||| | || ||||||||| ||| || || || || |
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| T |
19249751 |
ttctcatgttctttcagatcattttatccaatttattcatgcaacaggtggtctgaaagtgcggcattct-ttttttacagctgatttagcacctatatg |
19249849 |
T |
|
| Q |
339 |
tgtggatggtgttgaatgagggtaataaaagattatttaagaatttagagtgtttcataccacaattgttggataaagtaaaatgttattccttgtcgtg |
438 |
Q |
| |
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||||| |||||| ||| || ||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||| | |||| |||||| ||||| || |
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| T |
19249850 |
tgtgggtggtgtggaacgaatgtaataacagattgtttaagaatttagagtgttccataccacaattgttggacaaatttaaatattattctttgtcatg |
19249949 |
T |
|
| Q |
439 |
gatgaaagca |
448 |
Q |
| |
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| || ||||| |
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| T |
19249950 |
gttgcaagca |
19249959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 336 - 477
Target Start/End: Complemental strand, 2418494 - 2418353
Alignment:
| Q |
336 |
gtgtgtggatggtgttgaatgagggtaataaaagattatttaagaatttagagtgtttcataccacaattgttggataaagtaaaatgttattccttgtc |
435 |
Q |
| |
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||||||||||||||| |||| | |||||| | |||||||||||||||||| |||||||| |||||||||||||||||||| || | ||||||||| | |
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| T |
2418494 |
gtgtgtggatggtgtggaataaacttaataatatattatttaagaatttagaatgtttcatgccacaattgttggataaagttaagttttattccttttg |
2418395 |
T |
|
| Q |
436 |
gtggatgaaagcagataaagccaattttatgtattgctttca |
477 |
Q |
| |
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|||| |||||||| | || ||||||||| | ||| ||||||| |
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| T |
2418394 |
gtggctgaaagcaaaaaatgccaattttgtttatggctttca |
2418353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 30018387 - 30018304
Alignment:
| Q |
339 |
tgtggatggtgttgaatgagggtaataaaagattatttaagaatttagagtgtttcataccacaattgttggataaagtaaaat |
422 |
Q |
| |
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|||||||||||| ||| ||| ||||||| | |||||||||||||||||||||| |||||||||||| ||||| |||||||||| |
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| T |
30018387 |
tgtggatggtgtggaacgagtgtaataacattttatttaagaatttagagtgttccataccacaattattggacaaagtaaaat |
30018304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 360 - 462
Target Start/End: Complemental strand, 7433805 - 7433703
Alignment:
| Q |
360 |
gtaataaaagattatttaagaatttagagtgtttcataccacaattgttggataaagtaaaatgttattccttgtcgtggatgaaagcagataaagccaa |
459 |
Q |
| |
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||||||| |||||||||||||||||| |||||| |||||||||||| || || |||||||||| ||||||||||| ||| |||||| | |||||||| |
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| T |
7433805 |
gtaataacagattatttaagaatttacagtgttccataccacaattattagacaaagtaaaatattattccttgtggtgatggaaagctaagaaagccaa |
7433706 |
T |
|
| Q |
460 |
ttt |
462 |
Q |
| |
|
||| |
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|
| T |
7433705 |
ttt |
7433703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 13230561 - 13230471
Alignment:
| Q |
325 |
ttggctactcggtgtgtggatggtgttgaatgagggtaataaaagattatttaagaatttagagtgtttcataccacaattgttggataaa |
415 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||||| |||| || | ||||||||| |||||||| |||||||| || || |||||||||||| |
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| T |
13230561 |
ttggctcctctgtgtgtgggtggtgttgaatgaacgtaacaatatattatttaaaaatttagaatgtttcatgcctcagttgttggataaa |
13230471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 15489065 - 15489122
Alignment:
| Q |
360 |
gtaataaaagattatttaagaatttagagtgtttcataccacaattgttggataaagt |
417 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||| | | |||||||||||||||| |
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| T |
15489065 |
gtaataatagattatttaagaatttagaatgtttcatgcaataattgttggataaagt |
15489122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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