View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_6 (Length: 508)
Name: NF18168_low_6
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 13 - 505
Target Start/End: Original strand, 52806867 - 52807359
Alignment:
| Q |
13 |
caaaggagaaggtgttgttggtaacctattaagagctacattgaaacaaagctcaagagctctagattgaagtggatgttgtgaagtttgatggtgaggc |
112 |
Q |
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| T |
52806867 |
caaaggagaaggtgttgttggtaacctattaagagctacattgaaacaaagctcaagagccctagattgaagtggatgttgtgaagtttgatggtgaggc |
52806966 |
T |
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| Q |
113 |
tgatgagacttaagacaagctcttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgtggatgacctcgccttc |
212 |
Q |
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| T |
52806967 |
tgatgagacttaagacaagcccttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgtggatgacctcgccttc |
52807066 |
T |
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| Q |
213 |
tagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatcacttgatatatacacac |
312 |
Q |
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| T |
52807067 |
tagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatcacttgatatatacacac |
52807166 |
T |
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| Q |
313 |
cccctatacacttccctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaacgtggaactagcttaaagagtttc |
412 |
Q |
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| T |
52807167 |
cccctatacacttccctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaacgtggaactagcttaaagagtttc |
52807266 |
T |
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| Q |
413 |
aatgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttctttatagttcttctcactc |
505 |
Q |
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| T |
52807267 |
aatgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttctttatagttcttgtcactc |
52807359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 16611286 - 16611234
Alignment:
| Q |
38 |
ctattaagagctacattgaaacaaagctcaagagctctagattgaagtggatg |
90 |
Q |
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| T |
16611286 |
ctattaagagcaacattgaagcaaagttcaagagctctacattgaagaggatg |
16611234 |
T |
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