View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18168_low_8 (Length: 490)

Name: NF18168_low_8
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18168_low_8
NF18168_low_8
[»] chr1 (5 HSPs)
chr1 (1-363)||(36755448-36755810)
chr1 (187-294)||(26331415-26331521)
chr1 (247-294)||(20817829-20817876)
chr1 (224-261)||(42825588-42825625)
chr1 (246-293)||(10650045-10650092)
[»] chr6 (2 HSPs)
chr6 (147-293)||(33545813-33545967)
chr6 (226-294)||(12991655-12991724)
[»] chr7 (3 HSPs)
chr7 (201-303)||(31270662-31270765)
chr7 (246-303)||(11693611-11693668)
chr7 (246-294)||(24677032-24677080)
[»] chr5 (6 HSPs)
chr5 (246-292)||(22641951-22641997)
chr5 (246-294)||(25955067-25955115)
chr5 (224-294)||(36463269-36463339)
chr5 (223-296)||(15991078-15991153)
chr5 (247-303)||(16192782-16192838)
chr5 (244-304)||(17772135-17772195)
[»] chr4 (5 HSPs)
chr4 (246-294)||(1186254-1186302)
chr4 (239-311)||(17651862-17651935)
chr4 (201-291)||(24716395-24716486)
chr4 (128-178)||(9855971-9856021)
chr4 (150-180)||(17651766-17651796)
[»] chr8 (1 HSPs)
chr8 (239-293)||(3318615-3318670)
[»] chr3 (2 HSPs)
chr3 (225-268)||(2905740-2905783)
chr3 (247-303)||(55212556-55212611)
[»] scaffold0466 (1 HSPs)
scaffold0466 (246-294)||(5191-5239)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 36755448 - 36755810
Alignment:
Q  1 cacttataaaaagaaccatgagcagtttaaaaaagagagagacttcacgtttgaaaacagtgccaaaactttgataaattatatagcacacacacttaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  36755448 cacttataaaaagaaccatgagcagtttaaaaaagagagagacttcacgtttaaaaacagtgccaaaactttgataaattatatagcgcacacacttaga 36755547  T
Q  101 caattcttataatttttctatgttaagatttcttaagtgtttttaggtctattgagctttaagttagtttaccactctctaggtctaaacataaaacaat 200  Q
    |||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755548 caattcttataaattttctatgttaagatttcttaagtgttttcaaatctattgagctttaagttagtttaccactctctaggtctaaacataaaacaat 36755647  T
Q  201 tttagttgtaaactctgatttcaagaagtcctctaggagaggcaagaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755648 tttagttgtaaactctgatttcaagaagtcctctaggagaggcaagaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaa 36755747  T
Q  301 aattcgttggaacatgaaggagattgagctagccttgaattatgggatgaaccaggataatta 363  Q
    | || |||||||||||||||||| |||||||||||| |||||| || |||| |||||||||||    
T  36755748 atttggttggaacatgaaggagactgagctagcctttaattatagggtgaatcaggataatta 36755810  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 26331521 - 26331415
Alignment:
Q  187 aaacataaaacaattttagttgtaaactctgatttcaagaagtcctctaggagaggcaagaaatcttagacttgtgtgtctaggtaattgtaatcttgtg 286  Q
    ||||| ||| ||| |||| |||| ||||||||||  | ||||||||  || ||||| |||||||||| |||||||||||||| |||| ||||||||||||    
T  26331521 aaacacaaatcaaatttatttgtgaactctgattgta-gaagtccttaagaagaggtaagaaatctttgacttgtgtgtctaagtaactgtaatcttgtg 26331423  T
Q  287 tgattata 294  Q
    | ||||||    
T  26331422 taattata 26331415  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 20817829 - 20817876
Alignment:
Q  247 aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 294  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||    
T  20817829 aaatcttagatttgtgtgtctaagtaactgtaatcttgtgtgattata 20817876  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 42825588 - 42825625
Alignment:
Q  224 agaagtcctctaggagaggcaagaaatcttagacttgt 261  Q
    |||||||||| |||||||||||||||||||||||||||    
T  42825588 agaagtcctcaaggagaggcaagaaatcttagacttgt 42825625  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 10650045 - 10650092
Alignment:
Q  246 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattat 293  Q
    ||||| |||||||||||||| || |||||||||||||||| |||||||    
T  10650045 gaaattttagacttgtgtgtttaagtaattgtaatcttgtatgattat 10650092  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 33545967 - 33545813
Alignment:
Q  147 gtctattgagctttaagttagtttaccactctctaggtct--------aaacataaaacaattttagttgtaaactctgatttcaagaagtcctctagga 238  Q
    ||||||||||||||||||||||||||||||||||| || |        |||||| || ||| ||||  ||||||||||||||  | |||||| || |||     
T  33545967 gtctattgagctttaagttagtttaccactctctaagtatcaaagtgtaaacatcaatcaaatttatctgtaaactctgattgta-gaagtcatcaaggt 33545869  T
Q  239 gaggcaag-aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattat 293  Q
    ||| || | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33545868 gagacatggaaatcttagacttgtgtgtctaagtaatggtaatcttgtgtgattat 33545813  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 12991655 - 12991724
Alignment:
Q  226 aagtcctctaggagaggcaagaaatcttagacttgtgtgtctaggtaa-ttgtaatcttgtgtgattata 294  Q
    |||||||| ||||||||||  |||| |||||||| |||||| | |||| |||||||||||||||| ||||    
T  12991655 aagtcctcaaggagaggcataaaattttagacttatgtgtccatgtaaattgtaatcttgtgtgaatata 12991724  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 31270765 - 31270662
Alignment:
Q  201 tttagttgtaaactctgatttcaagaagtcctctag-gagaggcaag-aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatag 298  Q
    |||| |||||||||||||||  | ||||||||| || | |||||||| |||| |||||| |||||||||| ||||||||||||||||||||||||| |||    
T  31270765 tttatttgtaaactctgattgta-gaagtcctcaagtgtgaggcaaggaaatattagacatgtgtgtctaagtaattgtaatcttgtgtgattatagtag 31270667  T
Q  299 aaaat 303  Q
    |||||    
T  31270666 aaaat 31270662  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 11693611 - 11693668
Alignment:
Q  246 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaat 303  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  11693611 gaaatattagacttgtgtgtctaagtaattgtaatcttgtgtgattatagtcgaaaat 11693668  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 24677080 - 24677032
Alignment:
Q  246 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 294  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||    
T  24677080 gaaatcttagacttgtgtgttaaagtaattgtaatcttgtgtgattata 24677032  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 22641997 - 22641951
Alignment:
Q  246 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgatta 292  Q
    |||||||||||||||||||| || |||||||||||||||||||||||    
T  22641997 gaaatcttagacttgtgtgtttaagtaattgtaatcttgtgtgatta 22641951  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 25955067 - 25955115
Alignment:
Q  246 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 294  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||    
T  25955067 gaaatcttagacttgtgtgtctaaataattgtaatcttgtgcgattata 25955115  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 36463339 - 36463269
Alignment:
Q  224 agaagtcctctaggagaggcaagaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 294  Q
    |||||||||| |||  || || ||||||||||| ||||||||| | |||||||||||||| ||||||||||    
T  36463339 agaagtcctcaaggtaagacatgaaatcttagatttgtgtgtccaagtaattgtaatcttatgtgattata 36463269  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 15991078 - 15991153
Alignment:
Q  223 aagaagtcctctaggagaggcaa-gaaatcttagactt-gtgtgtctaggtaattgtaatcttgtgtgattataat 296  Q
    ||||||| ||| ||| ||||||| ||||||||| |||| | ||||||| |||||||||||||||| ||||||||||    
T  15991078 aagaagttctcaaggtgaggcaatgaaatcttaaactttgcgtgtctaagtaattgtaatcttgtatgattataat 15991153  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 16192782 - 16192838
Alignment:
Q  247 aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaat 303  Q
    |||||| |||||||||| ||||  || |||||||||||| |||||||| ||||||||    
T  16192782 aaatctaagacttgtgtatctaaatatttgtaatcttgtatgattatagtagaaaat 16192838  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 17772135 - 17772195
Alignment:
Q  244 aagaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaatt 304  Q
    ||||||||||| | ||||||||||| ||||||||||| || | |||||||| | |||||||    
T  17772135 aagaaatcttatatttgtgtgtctaagtaattgtaatattttatgattatagtggaaaatt 17772195  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 1186254 - 1186302
Alignment:
Q  246 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 294  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  1186254 gaaatcttagacttgtgtgtctaagtaattgtaatcttatgttattata 1186302  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 17651862 - 17651935
Alignment:
Q  239 gaggcaagaaa-tcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaattcgttgga 311  Q
    ||||||||||| |||||||||||| |||||| |||||||| |||||||||| ||||| |  |||||| ||||||    
T  17651862 gaggcaagaaaatcttagacttgtatgtctaagtaattgtcatcttgtgtgcttatagtgtaaaatttgttgga 17651935  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 24716395 - 24716486
Alignment:
Q  201 tttagttgtaaactctgatttcaagaagtcctct-aggagaggcaag-aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgatt 291  Q
    |||| |||||||||||||||  | |||||||||| | | |||||||| |||| ||||||||||||||||| |||||||||||  |||||||||    
T  24716395 tttatttgtaaactctgattgta-gaagtcctcttatgtgaggcaaggaaattttagacttgtgtgtctaagtaattgtaatgatgtgtgatt 24716486  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 9855971 - 9856021
Alignment:
Q  128 atttcttaagtgtttttaggtctattgagctttaagttagtttaccactct 178  Q
    ||||||||||||||   | ||||||||| ||||||||||||||||||||||    
T  9855971 atttcttaagtgttgagaagtctattgaactttaagttagtttaccactct 9856021  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 180
Target Start/End: Original strand, 17651766 - 17651796
Alignment:
Q  150 tattgagctttaagttagtttaccactctct 180  Q
    |||||||||||||||||||||||||||||||    
T  17651766 tattgagctttaagttagtttaccactctct 17651796  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 3318670 - 3318615
Alignment:
Q  239 gaggcaag-aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattat 293  Q
    |||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  3318670 gaggcaagtaaatcttagagttgtgcgtctaagtaattgtaatcttgtgtgattat 3318615  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 2905783 - 2905740
Alignment:
Q  225 gaagtcctctaggagaggcaagaaatcttagacttgtgtgtcta 268  Q
    |||||| || |||||||||| |||||||||||||||||||||||    
T  2905783 gaagtcttcaaggagaggcaggaaatcttagacttgtgtgtcta 2905740  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 55212611 - 55212556
Alignment:
Q  247 aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattataatagaaaat 303  Q
    |||||||| |||||||||| || ||||||||||||| ||||||||||| | ||||||    
T  55212611 aaatcttaaacttgtgtgt-taagtaattgtaatctcgtgtgattatagtggaaaat 55212556  T

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Target: scaffold0466 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 5191 - 5239
Alignment:
Q  246 gaaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgattata 294  Q
    ||||| |||| |||||||||||| |||||||||||| | ||||||||||    
T  5191 gaaattttaggcttgtgtgtctacgtaattgtaatcctttgtgattata 5239  T

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