View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18169_low_1 (Length: 377)

Name: NF18169_low_1
Description: NF18169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18169_low_1
NF18169_low_1
[»] chr1 (20 HSPs)
chr1 (73-360)||(5047379-5047664)
chr1 (176-233)||(9651954-9652011)
chr1 (73-150)||(39426210-39426287)
chr1 (94-232)||(32887799-32887938)
chr1 (97-198)||(7844939-7845041)
chr1 (97-230)||(12151686-12151820)
chr1 (175-232)||(32618717-32618774)
chr1 (107-151)||(23916085-23916129)
chr1 (20-62)||(5047407-5047449)
chr1 (97-147)||(24977243-24977293)
chr1 (96-150)||(26372252-26372306)
chr1 (162-204)||(42720845-42720887)
chr1 (176-230)||(46045616-46045670)
chr1 (167-233)||(49384751-49384817)
chr1 (97-230)||(12380932-12381066)
chr1 (97-230)||(12384999-12385133)
chr1 (169-233)||(33441360-33441424)
chr1 (188-232)||(40988775-40988819)
chr1 (170-230)||(45977941-45978001)
chr1 (170-230)||(50484305-50484365)
[»] chr5 (22 HSPs)
chr5 (97-232)||(3057333-3057469)
chr5 (97-230)||(32129639-32129773)
chr5 (97-230)||(4895757-4895891)
chr5 (73-232)||(29340914-29341072)
chr5 (166-227)||(128139-128200)
chr5 (97-230)||(35660631-35660765)
chr5 (170-231)||(41660034-41660095)
chr5 (97-230)||(14349723-14349856)
chr5 (169-232)||(10173865-10173928)
chr5 (170-229)||(39902335-39902394)
chr5 (176-230)||(11775711-11775765)
chr5 (97-147)||(11775796-11775846)
chr5 (97-147)||(18625443-18625493)
chr5 (97-147)||(34827195-34827245)
chr5 (112-230)||(13032038-13032156)
chr5 (81-142)||(14688582-14688643)
chr5 (167-232)||(25256122-25256187)
chr5 (167-232)||(25319911-25319976)
chr5 (168-233)||(31546402-31546467)
chr5 (97-150)||(43309108-43309161)
chr5 (74-150)||(2984389-2984465)
chr5 (169-232)||(14733482-14733546)
[»] chr3 (16 HSPs)
chr3 (166-232)||(29586254-29586320)
chr3 (175-232)||(550917-550974)
chr3 (170-229)||(3009169-3009228)
chr3 (94-230)||(10474457-10474594)
chr3 (166-233)||(28229479-28229546)
chr3 (178-229)||(33632743-33632794)
chr3 (97-147)||(2229986-2230036)
chr3 (170-224)||(31523754-31523808)
chr3 (97-204)||(34373607-34373715)
chr3 (170-224)||(42613015-42613069)
chr3 (170-224)||(49679356-49679410)
chr3 (166-232)||(50463404-50463470)
chr3 (176-221)||(27959045-27959090)
chr3 (167-199)||(2310261-2310293)
chr3 (176-220)||(31996801-31996845)
chr3 (170-230)||(40851692-40851752)
[»] chr2 (22 HSPs)
chr2 (175-232)||(2061294-2061351)
chr2 (178-232)||(19908697-19908751)
chr2 (73-150)||(4446894-4446971)
chr2 (73-150)||(30709110-30709187)
chr2 (95-146)||(15709772-15709823)
chr2 (166-233)||(30824094-30824161)
chr2 (161-224)||(38445574-38445637)
chr2 (170-224)||(8988791-8988845)
chr2 (170-224)||(29188588-29188642)
chr2 (97-147)||(35316828-35316878)
chr2 (168-220)||(2805304-2805356)
chr2 (97-227)||(28564813-28564945)
chr2 (170-221)||(42075459-42075510)
chr2 (170-220)||(374932-374982)
chr2 (170-224)||(23459932-23459986)
chr2 (170-232)||(36758947-36759009)
chr2 (166-204)||(41073031-41073069)
chr2 (97-150)||(21454516-21454569)
chr2 (170-233)||(1498812-1498876)
chr2 (97-153)||(30857700-30857756)
chr2 (168-220)||(39329928-39329980)
chr2 (170-230)||(41983435-41983495)
[»] scaffold0126 (1 HSPs)
scaffold0126 (97-228)||(22464-22596)
[»] chr7 (22 HSPs)
chr7 (166-232)||(41271789-41271855)
chr7 (166-232)||(8607958-8608024)
chr7 (165-233)||(8149536-8149604)
chr7 (77-221)||(9559056-9559201)
chr7 (100-232)||(29630965-29631098)
chr7 (176-224)||(32916104-32916152)
chr7 (109-230)||(21151071-21151193)
chr7 (166-233)||(32915875-32915942)
chr7 (112-224)||(19889071-19889174)
chr7 (95-150)||(40023276-40023331)
chr7 (97-147)||(4888470-4888520)
chr7 (178-232)||(5464007-5464061)
chr7 (112-150)||(11828946-11828984)
chr7 (166-232)||(23311425-23311491)
chr7 (97-147)||(25084750-25084800)
chr7 (166-232)||(30153274-30153339)
chr7 (166-232)||(48839857-48839923)
chr7 (98-147)||(16366521-16366570)
chr7 (178-227)||(18064494-18064543)
chr7 (73-150)||(47799898-47799975)
chr7 (176-232)||(48831287-48831341)
chr7 (73-153)||(989126-989206)
[»] chr8 (17 HSPs)
chr8 (73-150)||(42761713-42761790)
chr8 (95-146)||(18689495-18689546)
chr8 (175-234)||(22594061-22594120)
chr8 (170-233)||(24241501-24241564)
chr8 (97-147)||(24102019-24102069)
chr8 (97-227)||(28069641-28069772)
chr8 (175-232)||(42502934-42502989)
chr8 (97-230)||(30426691-30426825)
chr8 (98-147)||(36991359-36991408)
chr8 (170-230)||(5033025-5033085)
chr8 (166-233)||(44888551-44888618)
chr8 (97-147)||(10672534-10672584)
chr8 (170-224)||(34612498-34612552)
chr8 (97-147)||(41511265-41511315)
chr8 (73-150)||(26749546-26749623)
chr8 (97-153)||(21486312-21486368)
chr8 (187-231)||(28820791-28820835)
[»] chr6 (14 HSPs)
chr6 (97-230)||(4804367-4804501)
chr6 (97-230)||(1249168-1249302)
chr6 (109-232)||(2720294-2720414)
chr6 (73-150)||(2800609-2800686)
chr6 (97-227)||(27826460-27826591)
chr6 (166-232)||(30460995-30461061)
chr6 (124-230)||(32737793-32737900)
chr6 (73-146)||(7215850-7215923)
chr6 (98-147)||(12412640-12412689)
chr6 (97-230)||(29698082-29698216)
chr6 (170-220)||(2142379-2142429)
chr6 (97-147)||(21159391-21159441)
chr6 (124-153)||(13324918-13324947)
chr6 (188-232)||(29229025-29229069)
[»] chr4 (26 HSPs)
chr4 (97-230)||(19901940-19902074)
chr4 (170-232)||(25442271-25442333)
chr4 (97-230)||(5763184-5763318)
chr4 (176-233)||(23119486-23119543)
chr4 (170-233)||(4404216-4404279)
chr4 (97-224)||(34778346-34778474)
chr4 (108-150)||(31862253-31862295)
chr4 (170-224)||(37002337-37002391)
chr4 (170-224)||(56269163-56269217)
chr4 (100-153)||(1871274-1871327)
chr4 (97-230)||(47922097-47922231)
chr4 (170-233)||(1015941-1016004)
chr4 (175-230)||(23610561-23610616)
chr4 (170-224)||(5361378-5361432)
chr4 (97-147)||(5416487-5416537)
chr4 (170-224)||(5524382-5524436)
chr4 (178-232)||(5815405-5815459)
chr4 (97-147)||(12312498-12312548)
chr4 (97-147)||(30567904-30567954)
chr4 (179-233)||(52552689-52552743)
chr4 (112-150)||(56269113-56269151)
chr4 (170-227)||(24073539-24073596)
chr4 (170-227)||(56563898-56563955)
chr4 (176-220)||(618839-618883)
chr4 (170-230)||(12153090-12153150)
chr4 (170-230)||(33247224-33247284)
[»] scaffold0062 (1 HSPs)
scaffold0062 (95-146)||(58684-58735)
[»] scaffold0008 (1 HSPs)
scaffold0008 (170-232)||(9294-9356)
[»] scaffold0468 (1 HSPs)
scaffold0468 (135-225)||(5534-5625)
[»] scaffold0171 (1 HSPs)
scaffold0171 (170-224)||(17392-17446)
[»] scaffold0012 (1 HSPs)
scaffold0012 (97-230)||(207982-208116)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 73 - 360
Target Start/End: Original strand, 5047379 - 5047664
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttttgt 172  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||  |||||||    
T  5047379 caatttggagagagattgatgcataaaatagataatggatcctaccactatgtgggtcccaccatcattaattattttatattttttcaaacttttttgt 5047478  T
Q  173 gcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactcacttgtattatacaattccatgtcatgtttatgttaccaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5047479 gcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactcacttgtattatacaattccatgtcatgtttatgttaccaa 5047578  T
Q  273 tttatttatataaggtcctttgtttttgttatctaataccttgnnnnnnnnaatcttataggaacctatattgacaagaagtgtccct 360  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  5047579 tttatttatataaggtcctttgtttttgttatctaatacctt--tttttttaatcttataggaacctatattgacaagaagtgtccct 5047664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 9652011 - 9651954
Alignment:
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    ||||| |||| |||||||||||||||||| | ||| ||||||||||||||||||||||    
T  9652011 tttatttctccaaatggaagaaatggagagactaacaaatggagaggatcttaactca 9651954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 39426287 - 39426210
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    |||||||||||| ||| ||  ||||||||||||| ||| |||||||||||  ||||| |||| |||||||||||||||    
T  39426287 caatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattatttt 39426210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 32887799 - 32887938
Alignment:
Q  94 cataaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaac-tttttgtgcctttatctctctaaatgg 192  Q
    ||||||||| ||| |||||||||||| ||  ||||| ||||||||||||||||||||  |       ||||| |||||| | || |||||||| |||||     
T  32887799 cataaaataaatagtggatcctaccattaaatgggtcccaccatcattaattattttcaatttttttcaaacttttttgagtctatatctctccaaatga 32887898  T
Q  193 aagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||||||||||   ||  ||||| |||||||||||||||    
T  32887899 aagaaatggagaggatacaaaatgaagaggatcttaactc 32887938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 7845041 - 7844939
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactt-tttgtgcctttatctctctaaatggaag 195  Q
    |||||||||| ||||||||||||||| ||| || ||||||| |||||||| ||||||       ||||||| |||||  ||||||||||  |||||||||    
T  7845041 aaaatagatattggatcctaccactaagtgtgtcccaccattattaattagtttatacttttttcaaacttctttgtatctttatctcttcaaatggaag 7844942  T
Q  196 aaa 198  Q
    |||    
T  7844941 aaa 7844939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 12151820 - 12151686
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       ||| | ||| |||| ||||||||||| |||| |||     
T  12151820 aaaatagattgtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaat 12151721  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   |||||||| ||||||||||||    
T  12151720 aaatggagaaacacataaatggggaggatcttaac 12151686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 32618774 - 32618717
Alignment:
Q  175 ctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||||||||| ||||||| ||||| |||| | |||||||||||||| ||||||||||    
T  32618774 ctttatctctcaaaatggatgaaatagagagaataataaatggagagaatcttaactc 32618717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 23916129 - 23916085
Alignment:
Q  107 atggatcctaccactatgtgggttccaccatcattaattatttta 151  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||    
T  23916129 atggctcctaccactacgtgggtcccaccatcattaattatttta 23916085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 5047449 - 5047407
Alignment:
Q  20 ttaatgattgtggaacccacatagtgttaggatccattatcta 62  Q
    |||||||| |||| |||||||||||| ||||||||||||||||    
T  5047449 ttaatgatggtgggacccacatagtggtaggatccattatcta 5047407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 24977293 - 24977243
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||||||||||||||| ||||||||||| ||||||| ||||    
T  24977293 aaaatagatggtggatcctaccactaagtgggttccacaatcattagttat 24977243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 26372306 - 26372252
Alignment:
Q  96 taaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    ||||||||| ||| |||||||||| || |||||| |||||| |||||||||||||    
T  26372306 taaaatagacaatagatcctaccattaagtgggtcccaccaccattaattatttt 26372252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 42720845 - 42720887
Alignment:
Q  162 aaactttttgtgcctttatctctctaaatggaagaaatggaga 204  Q
    ||||||| |||| ||||||||||||||||| ||||||||||||    
T  42720845 aaactttatgtgtctttatctctctaaatgaaagaaatggaga 42720887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 46045670 - 46045616
Alignment:
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||| |||||||| || ||||||||| ||| |||||||||||| ||||||||    
T  46045670 tttatctttctaaatgaaacaaatggagaaagttataaatggagagaatcttaac 46045616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 49384751 - 49384817
Alignment:
Q  167 ttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    ||||||| | |||||||| |||||||| |||||||||| | | |||||| ||||||||||| |||||    
T  49384751 ttttgtgtccttatctctttaaatggaggaaatggagagaattataaatagagaggatcttgactca 49384817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 12380932 - 12381066
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| | ||||||||| ||| || ||||||||||||||||| || ||       |||  |||| |||| ||||||||||| |||| ||||    
T  12380932 aaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaag 12381031  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   |||||||||||||||| ||||    
T  12381032 aaatggagaaacacataaatggagaggatcctaac 12381066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 12384999 - 12385133
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| | ||||||||| ||| || ||||||||||||||||| || ||       |||  |||| |||| ||||||||||| |||| ||||    
T  12384999 aaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaag 12385098  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   |||||||||||||||| ||||    
T  12385099 aaatggagaaacacataaatggagaggatcctaac 12385133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 33441424 - 33441360
Alignment:
Q  169 ttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    ||||| || |||| ||| |||| |||||||||||||| ||| |||||  ||||||||||||||||    
T  33441424 ttgtgtctctatccctccaaatagaagaaatggagatggtactaaataaagaggatcttaactca 33441360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 40988819 - 40988775
Alignment:
Q  188 aatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||||| |||| |||| | |||||||||||||||||||||||||    
T  40988819 aatggaacaaatagagagaataataaatggagaggatcttaactc 40988775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 45978001 - 45977941
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    |||| ||||||||||| |||| ||||||||||||| |   |||||||||||||||| ||||    
T  45978001 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 45977941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 50484365 - 50484305
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    |||| ||||||||||| ||||  |||||||||||| |   |||||||||||||||||||||    
T  50484365 tgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaac 50484305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 3057469 - 3057333
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaac-tttttgtgcctttatctctctaaatggaag 195  Q
    |||| |||| |||||||||||||| | ||| |||||| |||||||||||||||||||       ||||| |||||||| ||||||||||| |||||||||    
T  3057469 aaaaaagatgatggatcctaccacaaagtgagttccatcatcattaattattttatacttttttcaaacttttttgtgtctttatctctcaaaatggaag 3057370  T
Q  196 aaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||  |||| |   ||||||||||| |||||||||||    
T  3057369 aaagtgagagaaacataaatggagatgatcttaactc 3057333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 32129639 - 32129773
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       |||| |||| |||| ||||||||||| |||| ||||    
T  32129639 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaag 32129738  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   |||||||||||||||| ||||    
T  32129739 aaatggagaaacatataaatggagaggatcctaac 32129773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 4895757 - 4895891
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       |||| |||| |||| ||||||||||| |||| ||||    
T  4895757 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaag 4895856  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   ||||||| |||||||| ||||    
T  4895857 aaatggagaaacatataaatgaagaggatcctaac 4895891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 29341072 - 29340914
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttttgt 172  Q
    |||||||||||| ||| ||  || |||||||||| ||| |||||| | || |||||| |||||||||||||||| ||  ||       | || |||||||    
T  29341072 caatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccatcattaattacttg-taagtttttcgaaatttttgt 29340974  T
Q  173 gcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
      || |||||||| ||||| | |||||||||| | ||||||||||||| |||||||||||    
T  29340973 ctctatatctctccaaatgaatgaaatggagagaataataaatggagaagatcttaactc 29340914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 128200 - 128139
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatctt 227  Q
    ||||||||  |||||||||||||||||| |||||||||| | |  |||||||||||||||||    
T  128200 tttttgtgtttttatctctctaaatggaggaaatggagacaattgtaaatggagaggatctt 128139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 35660631 - 35660765
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       ||| | ||| |||| ||||||||||| |||| ||||    
T  35660631 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaag 35660730  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||| ||||| |   |||||| ||||||||||||||    
T  35660731 aaacggagaaacacataaatagagaggatcttaac 35660765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 41660095 - 41660034
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaact 231  Q
    |||| ||||||||||||||||||| ||||||||||  | |||||||||||| ||| ||||||    
T  41660095 tgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttaact 41660034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 14349856 - 14349723
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttttgtgcctttatctctctaaatggaaga 196  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       |||  ||| |||| |||||||| || ||||  ||||    
T  14349856 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagatttatgtgtctttatctttccaaattaaaga 14349757  T
Q  197 aatggagatagtaataaatggagaggatcttaac 230  Q
    |||||||| |   ||||||||||| |||||||||    
T  14349756 aatggagaaacacataaatggagaagatcttaac 14349723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 10173928 - 10173865
Alignment:
Q  169 ttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||| ||||||||||| ||||| | ||||||||||  |  |||||||||||||||||||||||    
T  10173928 ttgtgtctttatctctccaaatgaaggaaatggagaaggacataaatggagaggatcttaactc 10173865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 39902394 - 39902335
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaa 229  Q
    |||| ||||||||||| |||| ||||||||||||| |   ||||||||||||||||||||    
T  39902394 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaa 39902335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 11775765 - 11775711
Alignment:
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    |||||||||| |||| ||||||||||||| |   |||||||||||||||||||||    
T  11775765 tttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaac 11775711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 11775846 - 11775796
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||||||||||||||| |||||| ||||| |||||||||||    
T  11775846 aaaatagatggtggatcctaccactaagtgggtcccaccgtcattaattat 11775796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 18625443 - 18625493
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||| ||||||||||| |||||| |||||||||||||||||    
T  18625443 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 18625493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 34827245 - 34827195
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||||||||||||||| |||||| |||||||| ||||||||    
T  34827245 aaaatagatggtggatcctaccactaagtgggtcccaccatctttaattat 34827195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 13032156 - 13032038
Alignment:
Q  112 tcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttttgtgcctttatctctctaaatggaagaaatggagatagtaat 211  Q
    |||||||||||  ||||| ||||||||||||||||| || ||        | | ||| |||| ||||||||||| |||| ||||||||||||| |   ||    
T  13032156 tcctaccactaaatgggtcccaccatcattaattatattttatttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacat 13032057  T
Q  212 aaatggagaggatcttaac 230  Q
    |||||||||||||| ||||    
T  13032056 aaatggagaggatcctaac 13032038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 14688643 - 14688582
Alignment:
Q  81 agagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcatta 142  Q
    |||| ||||||  ||||||||||||| ||||| |||||| || |||| ||||||||||||||    
T  14688643 agagagatcgacacataaaatagatattggattctaccattaagtggattccaccatcatta 14688582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 25256187 - 25256122
Alignment:
Q  167 ttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||  |||||||||  |||| ||||||||||||| | |||||||| ||||||||||| ||||    
T  25256187 ttttgtgtttttatctcttcaaatagaagaaatggagagactaataaatagagaggatcttgactc 25256122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 25319976 - 25319911
Alignment:
Q  167 ttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||  |||||||||  |||| ||||||||||||| | |||||||| ||||||||||| ||||    
T  25319976 ttttgtgtttttatctcttcaaatagaagaaatggagagactaataaatagagaggatcttgactc 25319911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 31546467 - 31546402
Alignment:
Q  168 tttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    |||||| || |||||||| |||| || ||||| |||| | ||||||||||||| ||||||||||||    
T  31546467 tttgtgactatatctctccaaattgatgaaatagagagaataataaatggagatgatcttaactca 31546402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 43309161 - 43309108
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    |||||||||| |||||| ||||| ||  ||||||||||||||||||||| ||||    
T  43309161 aaaatagatagtggatcttaccattaaatgggttccaccatcattaattttttt 43309108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 2984389 - 2984465
Alignment:
Q  74 aatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    ||||||||||| ||| ||  |||||||||  | ||| |||||| |||||  ||||| ||||||||||||||||||||    
T  2984389 aatttggagagagatagacacataaaataagtgatgaatcctatcactaaatgggtcccaccatcattaattatttt 2984465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 14733546 - 14733482
Alignment:
Q  169 ttgtgcctttatctctctaaatggaagaaatggagatagtaa-taaatggagaggatcttaactc 232  Q
    ||||| |||||||| ||||||||||||||||||||| |  || |||||| |||||||||| ||||    
T  14733546 ttgtgtctttatctttctaaatggaagaaatggagaaaaaaattaaatgaagaggatcttgactc 14733482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 29586320 - 29586254
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||| ||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||    
T  29586320 tttttgtgtctttatctctctaaatggatgaaatggagagaataataaatggagatgatcttaactc 29586254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 550917 - 550974
Alignment:
Q  175 ctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||||||||| |||||||||||||||||| ||  |||||||||||||||||||||||    
T  550917 ctttatctctccaaatggaagaaatggagaaagacataaatggagaggatcttaactc 550974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 3009228 - 3009169
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaa 229  Q
    |||| |||||||||||||||||||| ||||||||| | | ||||||||||||||||||||    
T  3009228 tgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatcttaa 3009169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 10474457 - 10474594
Alignment:
Q  94 cataaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatgg 192  Q
    |||||||||||||||||||||||| | || ||| ||||||||| ||||||||| ||| ||        ||| |||| |||| || |||||||| ||||      
T  10474457 cataaaatagataatggatcctactattaagtgagttccaccaacattaattactttttagttttttgaaatttttgtgtgtctatatctctccaaatat 10474556  T
Q  193 aagaaatggagatagtaataaatggagaggatcttaac 230  Q
    | |||||||||| | |||||||||||||| ||||||||    
T  10474557 atgaaatggagagaataataaatggagagaatcttaac 10474594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 28229479 - 28229546
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    |||||||| || ||||||||||||||||||||||||| |    | |||||||||||||||||||||||    
T  28229479 tttttgtgtctatatctctctaaatggaagaaatggacaagagattaaatggagaggatcttaactca 28229546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 33632794 - 33632743
Alignment:
Q  178 tatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaa 229  Q
    |||||||| ||||||| |||||||||| | ||||||||||||||||||||||    
T  33632794 tatctctccaaatggatgaaatggagagaataataaatggagaggatcttaa 33632743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 2230036 - 2229986
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    ||||||||| |||| ||||||||||| |||| |||||||||||||||||||    
T  2230036 aaaatagatgatgggtcctaccactaagtggtttccaccatcattaattat 2229986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 31523754 - 31523808
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||||||| ||||||||| | | |||||||||||||||    
T  31523754 tgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 31523808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 34373607 - 34373715
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       ||| | |||||||  ||||||||||| |||| ||||    
T  34373607 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttttgtctctttatctctccaaattgaag 34373706  T
Q  196 aaatggaga 204  Q
    |||||||||    
T  34373707 aaatggaga 34373715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 42613069 - 42613015
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||| ||| ||||||||| | | |||||||||||||||    
T  42613069 tgtgtctttatctctctaaatagaacaaatggagaaatttataaatggagaggat 42613015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 49679356 - 49679410
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| ||||||||||||||||| || ||||||||| | | |||||||||||||||    
T  49679356 tgtgtctttatctctctaaatgaaacaaatggagaaatttataaatggagaggat 49679410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 50463404 - 50463470
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||| || |||||||  ||||||| | || ||||| | |||||||||||||||||||||||||    
T  50463404 tttttgtgtctatatctctacaaatggatgtaacggagagaataataaatggagaggatcttaactc 50463470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 27959090 - 27959045
Alignment:
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggagag 221  Q
    ||||||||||||||||||| ||||||||| | | ||||||||||||    
T  27959090 tttatctctctaaatggaacaaatggagaaatttataaatggagag 27959045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 2310293 - 2310261
Alignment:
Q  167 ttttgtgcctttatctctctaaatggaagaaat 199  Q
    ||||||| |||||||||||||||||||||||||    
T  2310293 ttttgtgtctttatctctctaaatggaagaaat 2310261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 31996845 - 31996801
Alignment:
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggaga 220  Q
    |||||||||| |||| ||||||||||||| | |||||||||||||    
T  31996845 tttatctctccaaatagaagaaatggagacactaataaatggaga 31996801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 40851752 - 40851692
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    |||| ||||||||||| |||| ||||||||||||| |   |||||||||||||||| ||||    
T  40851752 tgtgtctttatctctccaaattgaagaaatggagaaatacataaatggagaggatcctaac 40851692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 2061351 - 2061294
Alignment:
Q  175 ctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||    
T  2061351 ctttatctctccaaatggaagaaattgagatactaataaatggagaggatcttaactc 2061294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 19908751 - 19908697
Alignment:
Q  178 tatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||||||||||| |||||| ||| | |||||||||||||||||||||||||    
T  19908751 tatctctctaaatggatgaaatgaagagaataataaatggagaggatcttaactc 19908697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 4446894 - 4446971
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    ||||||| |||| ||| ||  ||||||||||||| |||||||||||||||  |||||| ||| |||||||||||||||    
T  4446894 caatttgaagagagatagacacataaaatagatagtggatcctaccactaattgggtttcactatcattaattatttt 4446971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 30709187 - 30709110
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    |||||||||||| ||| ||  ||||||||||||| ||| ||||||||||| |||| | ||||||||||||||| ||||    
T  30709187 caatttggagagagatagacacataaaatagatattgggtcctaccactaagtggatcccaccatcattaattgtttt 30709110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 15709823 - 15709772
Alignment:
Q  95 ataaaatagataatggatcctaccactatgtgggttccaccatcattaatta 146  Q
    |||||||||||| |||||||||||| || |||||||||| ||||||||||||    
T  15709823 ataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 15709772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 30824161 - 30824094
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    |||||||| || |||||||||||||||||||||||||||    | |||||||| ||||||||||||||    
T  30824161 tttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggaaaggatcttaactca 30824094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 38445574 - 38445637
Alignment:
Q  161 caaactttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    ||||||||||||| |||||||| || |||||||||||||| ||| |||||||| | ||||||||    
T  38445574 caaactttttgtgactttatctttccaaatggaagaaatgaagagagtaataactcgagaggat 38445637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 8988845 - 8988791
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||||||| ||||||||| | | |||||||||||||||    
T  8988845 tgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 8988791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 29188642 - 29188588
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||||||| ||||||||| | | |||||||||||||||    
T  29188642 tgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 29188588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 35316878 - 35316828
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||||||||||||||| |||||| |||||||||||||||||    
T  35316878 aaaatagatggtggatcctaccactaagtgggtcccaccatcattaattat 35316828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 2805304 - 2805356
Alignment:
Q  168 tttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggaga 220  Q
    |||||| |||||| ||| ||||||||||||||||||| | |||||||||||||    
T  2805304 tttgtgtctttatttctttaaatggaagaaatggagagactaataaatggaga 2805356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 28564945 - 28564813
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa--actttttgtgcctttatctctctaaatggaa 194  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||        ||  | ||| |||| ||||||||||| |||| |||    
T  28564945 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttaaaagattttatgtgtctttatctctccaaattgaa 28564846  T
Q  195 gaaatggagatagtaataaatggagaggatctt 227  Q
    |||||||||| |   ||||||||||||||||||    
T  28564845 gaaatggagaaacacataaatggagaggatctt 28564813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 42075459 - 42075510
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagag 221  Q
    |||| ||||||||||| |||||||||||||||| | | ||||||||||||||    
T  42075459 tgtgtctttatctctccaaatggaagaaatggataaactaataaatggagag 42075510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 374982 - 374932
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggaga 220  Q
    |||| |||||||||||||||||||| ||||||||| | | |||||||||||    
T  374982 tgtgtctttatctctctaaatggaacaaatggagaaatttataaatggaga 374932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 23459932 - 23459986
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||| ||||||| ||||||||| | | |||||||||||||||    
T  23459932 tgtgtctttatctctctgaatggaacaaatggagaaatttataaatggagaggat 23459986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 36758947 - 36759009
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||| |||||||| ||||||||||| ||||||| | ||| |||||| |||| |||||||||||    
T  36758947 tgtgtctttatctttctaaatggaacaaatggaaaaagttataaatagagaagatcttaactc 36759009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 41073031 - 41073069
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggaga 204  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  41073031 tttttgtgtctttatctctctaaatgaaagaaatggaga 41073069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 21454516 - 21454569
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    |||||||||  ||| || ||||| || |||||||||||||||||||||||||||    
T  21454516 aaaatagattgtgggtcataccattaagtgggttccaccatcattaattatttt 21454569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 1498876 - 1498812
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggaga-tagtaataaatggagaggatcttaactca 233  Q
    ||||||||||||||||||||| ||||| ||||||| ||||   ||||||| |||||||| |||||    
T  1498876 tgtgcctttatctctctaaatagaagatatggagagtagtctaaaatggaaaggatcttgactca 1498812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 30857700 - 30857756
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttata 153  Q
    ||||||||||||||||||||| | ||  ||| |  ||||||||||||||||||||||    
T  30857700 aaaatagataatggatcctactattaaatggatcacaccatcattaattattttata 30857756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 39329928 - 39329980
Alignment:
Q  168 tttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggaga 220  Q
    |||||| ||||||||||| ||||||| ||||| |||| | |||||||||||||    
T  39329928 tttgtgtctttatctctccaaatggatgaaatagagacactaataaatggaga 39329980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 41983435 - 41983495
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    |||| ||||||||||| ||||  |||||||||||| |   |||||||||||||||||||||    
T  41983435 tgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaac 41983495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 22464 - 22596
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||| ||||||||||||||| ||| ||||||| || ||||||||| || ||       |||  |||| ||||  |||||||||||||||| |||    
T  22464 aaaatagatagtggatcctaccactaagtgagttccacaataattaattatattttacttttttcaagattttatgtgtatttatctctctaaatgtaag 22563  T
Q  196 aaatggagatagtaataaatggagaggatctta 228  Q
    ||||||||||||  ||||||||||| |||||||    
T  22564 aaatggagatagacataaatggagaagatctta 22596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 41271855 - 41271789
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||| || ||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||    
T  41271855 tttttttgtctttatctctctaaatggaagaaatggagaagataaaaaatggagaggatcttaactc 41271789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 8608024 - 8607958
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||| || ||||| || |||||||| ||||||||| ||| |||||||||||||||||||||||    
T  8608024 tttttgtgtctctatctttccaaatggaacaaatggagaaagttataaatggagaggatcttaactc 8607958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 8149604 - 8149536
Alignment:
Q  165 ctttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    ||||||||| ||||||||||| |||||| |||||| ||||   |||||||| |||||||||||||||||    
T  8149604 ctttttgtgtctttatctctccaaatggtagaaatagagaggataataaattgagaggatcttaactca 8149536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 9559056 - 9559201
Alignment:
Q  77 ttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcc 175  Q
    |||||||| ||| ||| || |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       ||| | ||| |||| |    
T  9559056 ttggagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttatttttttcaagattttatgtgtc 9559155  T
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggagag 221  Q
    |||||||||| ||||||||||||| |||| |   ||||||||||||    
T  9559156 tttatctctccaaatggaagaaatcgagaaacatataaatggagag 9559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 29631098 - 29630965
Alignment:
Q  100 atagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaagaaa 198  Q
    ||||||| ||| ||| |||||||||| ||| |||| ||||||||||||| | ||       |||| |||| |||| |||||| |||| ||||| ||||||    
T  29631098 atagatagtgggtccaaccactatgtaggtcccactatcattaattattctttacttttttcaaaattttatgtgtctttatatctccaaatgaaagaaa 29630999  T
Q  199 tggagatagtaataaatggagaggatcttaactc 232  Q
    |||||| ||  || ||||||||||||||||||||    
T  29630998 tggagaaagacatgaatggagaggatcttaactc 29630965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 32916152 - 32916104
Alignment:
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||||||||| |||||||||||||||||| ||| |||||||||||||||    
T  32916152 tttatctctcaaaatggaagaaatggagaaagttataaatggagaggat 32916104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 21151193 - 21151071
Alignment:
Q  109 ggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaagaaatggagatag 207  Q
    |||||||||||||| |||||| ||||||||||||||||| || ||       ||| | ||| |||| ||||||||||| |||| ||||||||||||| |     
T  21151193 ggatcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaac 21151094  T
Q  208 taataaatggagaggatcttaac 230  Q
      |||||||||||| ||| ||||    
T  21151093 acataaatggagagaatcctaac 21151071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 32915942 - 32915875
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagta-ataaatggagaggatcttaactca 233  Q
    |||||||| ||||||||||| |||||||||||||||||| || | |||||||| |||||||||| ||||    
T  32915942 tttttgtgtctttatctctccaaatggaagaaatggaga-agaacataaatggggaggatcttagctca 32915875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 19889071 - 19889174
Alignment:
Q  112 tcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttttgtgcctttatctctctaaatggaagaaatggagatagtaat 211  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||            ||| |||| |||||||||||||||||||| ||||||||| | | ||    
T  19889071 tcctatcactaagtgggttccaccatcattaattattttttactt---------tttatgtgtctttatctctctaaatggaataaatggagaaatttat 19889161  T
Q  212 aaatggagaggat 224  Q
    | |||||||||||    
T  19889162 agatggagaggat 19889174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 40023276 - 40023331
Alignment:
Q  95 ataaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    ||||||||| ||||||||| ||||| || |||||| |||||| |||||||||||||    
T  40023276 ataaaatagttaatggatcttaccattaagtgggtcccaccaccattaattatttt 40023331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 4888520 - 4888470
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||| ||| ||||||||||| || ||| |||||||||||||||||    
T  4888520 aaaatagatagtgggtcctaccactaagtaggtcccaccatcattaattat 4888470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 5464007 - 5464061
Alignment:
Q  178 tatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||| ||||| | |||||||||| | |||||||||||||| ||||||||||    
T  5464007 tatctctccaaatgaatgaaatggagagaataataaatggagagaatcttaactc 5464061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 11828946 - 11828984
Alignment:
Q  112 tcctaccactatgtgggttccaccatcattaattatttt 150  Q
    |||||||| || |||||||||||||||||||||||||||    
T  11828946 tcctaccattaagtgggttccaccatcattaattatttt 11828984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 23311491 - 23311425
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||||||  |||||||||| ||||| |||||||||||  | |||||||| |||||||| |||||||    
T  23311491 tttttgtgtttttatctctccaaatgaaagaaatggagtgactaataaatagagaggattttaactc 23311425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 25084750 - 25084800
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||| ||||||||||| |||||| |||||||||||||||||    
T  25084750 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 25084800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 30153274 - 30153339
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||| || ||||||||||| ||||||||||| || ||||  | |||||||||||||||||||||||    
T  30153274 tttttttgtctttatctctccaaatggaagaa-tgaagatgatcataaatggagaggatcttaactc 30153339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 48839857 - 48839923
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||| || ||||||||||| ||||||| |||||||||| ||| |||||| ||||| |||| |||||    
T  48839857 tttttttgtctttatctctccaaatggacgaaatggagagagttataaatagagagcatctaaactc 48839923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 16366570 - 16366521
Alignment:
Q  98 aaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    ||||||||  ||||||||||||||| ||| || |||||||||||||||||    
T  16366570 aaatagatggtggatcctaccactaagtgtgtcccaccatcattaattat 16366521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 18064543 - 18064494
Alignment:
Q  178 tatctctctaaatggaagaaatggagatagtaataaatggagaggatctt 227  Q
    ||||||||||||| |||||||||||||  |||  ||||||||||||||||    
T  18064543 tatctctctaaatagaagaaatggagaaggtacaaaatggagaggatctt 18064494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 47799898 - 47799975
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    |||||||||||| ||| ||  || ||||||  | |||| ||||| ||||| |||||| ||||||||||||||||||||    
T  47799898 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 47799975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 48831287 - 48831341
Alignment:
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||||| |||||||||| |||||||||| |  ||||||||||||||||||| ||||    
T  48831287 tttatctttctaaatggaggaaatggagaga--aataaatggagaggatcttgactc 48831341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 989206 - 989126
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattattttata 153  Q
    |||||||||||| ||| ||  || |||||| ||| ||| ||||||||||| || ||| | ||||| |||||||||||||||    
T  989206 caatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccataattaattattttata 989126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 42761790 - 42761713
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    ||||||| |||| ||| ||  ||||||||||||| ||||||||||||||  |||||||||| ||||||||||||||||    
T  42761790 caatttgaagagagatagacacataaaatagatagtggatcctaccactcagtgggttccatcatcattaattatttt 42761713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 18689546 - 18689495
Alignment:
Q  95 ataaaatagataatggatcctaccactatgtgggttccaccatcattaatta 146  Q
    |||||||||||| |||||||||||| || |||||||||| ||||||||||||    
T  18689546 ataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 18689495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 22594061 - 22594120
Alignment:
Q  175 ctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactcac 234  Q
    |||||||||||||||| |||||||| |||| | ||| ||||| |||||||||||||||||    
T  22594061 ctttatctctctaaatagaagaaattgagagactaacaaatgaagaggatcttaactcac 22594120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 24241564 - 24241501
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    |||| ||||||||||||||||||| ||||||||||  | |||||||||||| |||||| |||||    
T  24241564 tgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagatcttgactca 24241501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 24102069 - 24102019
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||||||||||||||| ||| ||||||||||||||||||||    
T  24102069 aaaatagatggtggatcctaccactaagtgagttccaccatcattaattat 24102019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 28069772 - 28069641
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       ||| | ||| |||| ||||||||||| |||||||||    
T  28069772 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaag 28069673  T
Q  196 aaatggagatagtaataaatggagaggatctt 227  Q
    |||| || | |   ||||||||||||||||||    
T  28069672 aaattgaaaaacacataaatggagaggatctt 28069641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 42502989 - 42502934
Alignment:
Q  175 ctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    ||||||||||| |||||||| |||||||||   |||||||||||||||||||||||||    
T  42502989 ctttatctctccaaatggaaaaaatggagac--taataaatggagaggatcttaactc 42502934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 30426691 - 30426825
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       ||| | ||| |||| ||||||||||| |||| ||||    
T  30426691 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaag 30426790  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||| | |   |||||||||||||||| ||||    
T  30426791 aaatggaaaaacacataaatggagaggatcctaac 30426825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 36991408 - 36991359
Alignment:
Q  98 aaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||| |||| ||||||||||| |||||| |||||||||||||||||    
T  36991408 aaatagatgatgggtcctaccactaagtgggtcccaccatcattaattat 36991359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 5033085 - 5033025
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    |||| ||||||||||| |||| ||||||||||||| |   |||||||||||||||||||||    
T  5033085 tgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaac 5033025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 44888618 - 44888551
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    ||||| || ||||||||||| |||| ||| ||||||||| | | |||||||||||||||||| |||||    
T  44888618 tttttatgtctttatctctccaaatagaaaaaatggagacaattataaatggagaggatcttcactca 44888551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 10672534 - 10672584
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||||||||||||||| ||| || |||||||||||||||||    
T  10672534 aaaatagatggtggatcctaccactaagtgagtcccaccatcattaattat 10672584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 34612552 - 34612498
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||||||| ||||||| | | | |||||||||||||||    
T  34612552 tgtgtctttatctctctaaatggaacaaatggaaaaatttataaatggagaggat 34612498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 41511315 - 41511265
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  41511315 aaaatagatagtgggtcctatcactaagtggtttccaccatcattaattat 41511265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 26749546 - 26749623
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    |||||||||||| ||| ||  || ||||||  | |||| ||||| ||||| |||||| ||||||||||||||||||||    
T  26749546 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 26749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 21486312 - 21486368
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttata 153  Q
    |||||||||||| |||| |||||||| ||  ||  ||||||||||||||||||||||    
T  21486312 aaaatagataatagatcttaccactaagtaagtctcaccatcattaattattttata 21486368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 28820791 - 28820835
Alignment:
Q  187 aaatggaagaaatggagatagtaataaatggagaggatcttaact 231  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||    
T  28820791 aaatggaagaaatggagaaagatacaaatggagaggatcttaact 28820835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 4804501 - 4804367
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       |||| |||| |||| ||||||||||| |||| ||||    
T  4804501 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaag 4804402  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   |||||||||||||||| ||||    
T  4804401 aaatggagaaacatataaatggagaggatcctaac 4804367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 1249168 - 1249302
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       ||| | ||| |||| |||||||| || |||| ||||    
T  1249168 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctttccaaattgaag 1249267  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   |||||||||||||||||||||    
T  1249268 aaatggagaaacacataaatggagaggatcttaac 1249302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 232
Target Start/End: Complemental strand, 2720414 - 2720294
Alignment:
Q  109 ggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttttgtgcctttatctctctaaatggaagaaatggagatagt 208  Q
    |||||||||||||| |||||| |||||||||||||||||||||||       ||||| |||||   |||||||||| |||||  |||||||||||||  |    
T  2720414 ggatcctaccactaagtgggtcccaccatcattaattattttata--tttttcaaac-ttttggatctttatctctttaaataaaagaaatggagatgat 2720318  T
Q  209 aataaatggagaggatcttaactc 232  Q
     ||| ||||||||||| |||||||    
T  2720317 catagatggagaggatattaactc 2720294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 2800609 - 2800686
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    |||||||||||| ||| ||  ||||||||||||| |||||| ||||| || |||||| ||||||||||| ||||||||    
T  2800609 caatttggagagagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattatttt 2800686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 27826591 - 27826460
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||        ||  |||| |||| ||||||||||| |||||||||    
T  27826591 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttattttttaaaattttttatgtgtctttatctctcaaaatggaag 27826492  T
Q  196 aaatggagatagtaataaatggagaggatctt 227  Q
    |||| |||| |   ||||||||||||||||||    
T  27826491 aaattgagaaacacataaatggagaggatctt 27826460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 30460995 - 30461061
Alignment:
Q  166 tttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||| ||||||| ||||||||||| ||||||||||  | |||||||||||| |||||| ||||    
T  30460995 tttttgtgtctttatcactctaaatggaggaaatggagaaggaaataaatggagatgatcttgactc 30461061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 32737900 - 32737793
Alignment:
Q  124 gtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagagg 222  Q
    |||||||||||||||||||||||| || ||       |||| |||| |||| ||||||||||| |||| ||||||||||||| |   |||||||||||||    
T  32737900 gtgggttccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagagg 32737801  T
Q  223 atcttaac 230  Q
    ||| ||||    
T  32737800 atcctaac 32737793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 7215850 - 7215923
Alignment:
Q  73 caatttggagagcgatcgatgcataaaatagataatggatcctaccactatgtgggttccaccatcattaatta 146  Q
    |||||||||||| ||| ||  ||||||||||||| ||| |||||||||||  ||||| |||| |||||||||||    
T  7215850 caatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaatta 7215923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 12412689 - 12412640
Alignment:
Q  98 aaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    ||||||||  ||| ||||||||||| ||||||||||||||||||||||||    
T  12412689 aaatagatggtgggtcctaccactaagtgggttccaccatcattaattat 12412640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 29698216 - 29698082
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaag 195  Q
    |||||||||  |||||||||||| || |||||| ||||||||||||||||| || ||       ||| | ||| |||| |||||| |||| |||| ||||    
T  29698216 aaaatagatggtggatcctaccattaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatttctccaaattgaag 29698117  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   |||||||||||||||| ||||    
T  29698116 aaatggagaaacacataaatggagaggatcctaac 29698082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 2142379 - 2142429
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggaga 220  Q
    |||| ||||||||||||||||||| ||||||||||  | ||||||||||||    
T  2142379 tgtgtctttatctctctaaatggaggaaatggagagggaaataaatggaga 2142429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 21159391 - 21159441
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||| ||||||||||| |||||| |||||||||||||||||    
T  21159391 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 21159441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 13324947 - 13324918
Alignment:
Q  124 gtgggttccaccatcattaattattttata 153  Q
    ||||||||||||||||||||||||||||||    
T  13324947 gtgggttccaccatcattaattattttata 13324918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 29229069 - 29229025
Alignment:
Q  188 aatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||    
T  29229069 aatggatgaaatcgagagaataataaatggagaggatcttaactc 29229025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 19901940 - 19902074
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       |||| |||| |||| ||||||||||| |||| ||||    
T  19901940 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaag 19902039  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    |||| |||| |   |||||||||||||||||||||    
T  19902040 aaatagagaaacacataaatggagaggatcttaac 19902074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 25442271 - 25442333
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||| ||||||||||| ||||||||||||||||||  |  |||||||||||||||||||||||    
T  25442271 tgtgtctttatctctccaaatggaagaaatggagaaggccataaatggagaggatcttaactc 25442333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 5763184 - 5763318
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||||||||||||||||| || ||       |||| |||| |||| ||||||||||| |||| ||||    
T  5763184 aaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaag 5763283  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   ||||||||||| |||| ||||    
T  5763284 aaatggagaaacatataaatggagatgatcctaac 5763318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 23119486 - 23119543
Alignment:
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    |||||||||| |||||||||||||||||| | ||||||||||||| |||||| |||||    
T  23119486 tttatctctccaaatggaagaaatggagagactaataaatggagatgatcttgactca 23119543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 4404279 - 4404216
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    |||| |||||||| |||||||||| ||||||||||  | ||||||||||||||||||| |||||    
T  4404279 tgtgtctttatctttctaaatggaggaaatggagagggaaataaatggagaggatcttgactca 4404216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 34778474 - 34778346
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||||||||||||||| |||||| ||||||||||||||||| || ||       ||| | ||| |||| ||||||||||| | || ||||    
T  34778474 aaaatagatggtggatcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccacattgaag 34778375  T
Q  196 aaatggagatagtaataaatggagaggat 224  Q
    ||||||||| |   |||||||||||||||    
T  34778374 aaatggagaaacacataaatggagaggat 34778346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 31862253 - 31862295
Alignment:
Q  108 tggatcctaccactatgtgggttccaccatcattaattatttt 150  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  31862253 tggatcctaccactaagtgggtcccaccatcattaattatttt 31862295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 37002337 - 37002391
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||||||| ||||||||| | | |||||||||||||||    
T  37002337 tgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 37002391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 56269163 - 56269217
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||||||| ||||||||| | | |||||||||||||||    
T  56269163 tgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 56269217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 1871327 - 1871274
Alignment:
Q  100 atagataatggatcctaccactatgtgggttccaccatcattaattattttata 153  Q
    ||||||| |||||||||| |||| |||||| ||| |||||||||||||||||||    
T  1871327 atagatagtggatcctactactaagtgggtcccatcatcattaattattttata 1871274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 47922097 - 47922231
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaa-actttttgtgcctttatctctctaaatggaag 195  Q
    |||||||||| ||| || |||||||| |||||||||||||||||||| ||| || ||       ||| | |||  ||| |||||||||||||||| ||||    
T  47922097 aaaatagatagtgggtcttaccactaagtgggttccaccatcattaaatatattttatttttttcaatattttacgtgtctttatctctctaaattgaag 47922196  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   |||||| ||||||||| ||||    
T  47922197 aaatggagaaacacataaattgagaggatcctaac 47922231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 1015941 - 1016004
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    |||| ||||||||||||||||||| ||||||||||  | |||||||||||| ||| || |||||    
T  1015941 tgtgtctttatctctctaaatggaggaaatggagagggaaataaatggagaagattttgactca 1016004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 23610616 - 23610561
Alignment:
Q  175 ctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||||| |||| ||||||||||||| |   |||||||||||||||||||||    
T  23610616 ctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaac 23610561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 5361432 - 5361378
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||||||| ||||| ||| | | |||||||||||||||    
T  5361432 tgtgtctttatctctctaaatggaacaaatgaagaaatttataaatggagaggat 5361378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 5416487 - 5416537
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||| ||||||||||| |||||| |||||||||||||||||    
T  5416487 aaaatagattgtgggtcctaccactaagtgggtcccaccatcattaattat 5416537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 5524436 - 5524382
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||||||| ||||||| | | | |||||||||||||||    
T  5524436 tgtgtctttatctctctaaatggaacaaatggaaaaatttataaatggagaggat 5524382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 5815405 - 5815459
Alignment:
Q  178 tatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||| ||||||||||||||||||  |||  |||||||||||||||| ||||    
T  5815405 tatctctccaaatggaagaaatggagaatgtacaaaatggagaggatcttgactc 5815459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 12312498 - 12312548
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||||||||||||||| |||||| ||| |||||||||||||    
T  12312498 aaaatagatggtggatcctaccactaagtgggtcccatcatcattaattat 12312548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 30567954 - 30567904
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattat 147  Q
    |||||||||  ||| ||||||||||| |||||||||| |||||||||||||    
T  30567954 aaaatagatggtgggtcctaccactaagtgggttccatcatcattaattat 30567904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 52552743 - 52552689
Alignment:
Q  179 atctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactca 233  Q
    ||||||| ||||| | ||||| |||||| ||||||||||| ||||||||||||||    
T  52552743 atctctccaaatgaatgaaatagagataataataaatggataggatcttaactca 52552689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 56269113 - 56269151
Alignment:
Q  112 tcctaccactatgtgggttccaccatcattaattatttt 150  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  56269113 tcctaccactaagtgggtcccaccatcattaattatttt 56269151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 24073596 - 24073539
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatctt 227  Q
    |||||||| ||||||| ||||||||||||| |||| |   ||||||||||||||||||    
T  24073596 tgtgccttcatctctccaaatggaagaaattgagaaacacataaatggagaggatctt 24073539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 56563955 - 56563898
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatctt 227  Q
    |||| |||||||||||||||||||  |||| ||||  | |||||||||||||||||||    
T  56563955 tgtgtctttatctctctaaatggagaaaatagagagggaaataaatggagaggatctt 56563898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 618883 - 618839
Alignment:
Q  176 tttatctctctaaatggaagaaatggagatagtaataaatggaga 220  Q
    |||||||||||||||||| ||||||||||  | ||||||||||||    
T  618883 tttatctctctaaatggaggaaatggagagggaaataaatggaga 618839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 12153150 - 12153090
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    |||| ||||||||||| |||| ||||||||||||| |   |||||||||||||||| ||||    
T  12153150 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 12153090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 33247224 - 33247284
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaac 230  Q
    |||| ||||||||||| |||| ||||||||||||| |   |||||||||||||||| ||||    
T  33247224 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 33247284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 58735 - 58684
Alignment:
Q  95 ataaaatagataatggatcctaccactatgtgggttccaccatcattaatta 146  Q
    |||||||||||| |||||||||||| || |||||||||| ||||||||||||    
T  58735 ataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 58684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 9294 - 9356
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 232  Q
    |||||||||||||||| ||||||||||||| |||| |   |||||||||||||||||| ||||    
T  9294 tgtgcctttatctctccaaatggaagaaattgagaaacacataaatggagaggatcttcactc 9356  T

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Target: scaffold0468 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 5625 - 5534
Alignment:
Q  135 catcattaattattttatannnnnnncaaactt-tttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatc 225  Q
    |||||||||||||||||||       ||||||| ||| || ||||||||||| |||||||||||||| |||   | ||||||||||||||||    
T  5625 catcattaattattttatacttttttcaaacttctttatgtctttatctctccaaatggaagaaatgaagaggatcataaatggagaggatc 5534  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 17392 - 17446
Alignment:
Q  170 tgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggat 224  Q
    |||| |||||||||||||||||||| ||||| ||| | | |||||||||||||||    
T  17392 tgtgtctttatctctctaaatggaacaaatgaagaaatttataaatggagaggat 17446  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 208116 - 207982
Alignment:
Q  97 aaaatagataatggatcctaccactatgtgggttccaccatcattaattattttatannnnnnncaaactttt-tgtgcctttatctctctaaatggaag 195  Q
    |||||||||  ||| ||||||||||| |||||| ||| ||||||||||||| || ||        ||  |||| |||| ||||||||||| |||| ||||    
T  208116 aaaatagatggtgggtcctaccactaagtgggtcccatcatcattaattatattttactttttttaagattttatgtgtctttatctctccaaattgaag 208017  T
Q  196 aaatggagatagtaataaatggagaggatcttaac 230  Q
    ||||||||| |   |||||||||||||||| ||||    
T  208016 aaatggagaaacacataaatggagaggatcctaac 207982  T

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