View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18170_high_10 (Length: 380)
Name: NF18170_high_10
Description: NF18170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18170_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 9070959 - 9071238
Alignment:
| Q |
11 |
atattgacatcgagtgtgattcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagt |
110 |
Q |
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| T |
9070959 |
atattgacatcgagtgtgattcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagt |
9071058 |
T |
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| Q |
111 |
acaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaagggaaatttaataagaggttggtcaggtcca |
210 |
Q |
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| T |
9071059 |
acaatataggcagaactctttaggataaacaca---ttgatcttgtgatgattccttaacgatttggaagggaaatttaataagaggttggttaggtcca |
9071155 |
T |
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| Q |
211 |
caatatgattctctgcactggtcatgagcattgccacttctgataagcaagatcataagaagttgcatgatcaaagtaatatg |
293 |
Q |
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| T |
9071156 |
caatatgattctctgcactggtcatgagcattgccacttttgataagcaagatcataagaagttgcatgatcaaagtagtatg |
9071238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 9087308 - 9087427
Alignment:
| Q |
54 |
gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatct |
153 |
Q |
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| T |
9087308 |
gaatttgattggacctgaattggaagagagcacaatcatggttctcttatttttagtacaatataagcaaaactc---aggataaacaca---ttgatct |
9087401 |
T |
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| Q |
154 |
tgtgatgattccttaacgatttggaa |
179 |
Q |
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| T |
9087402 |
tgtgatgattccttaacgagttggaa |
9087427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 8862837 - 8862986
Alignment:
| Q |
27 |
tgattcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaac |
126 |
Q |
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| T |
8862837 |
tgattcgtagtctatgtaatatacacggaatttgattggacctgaagtggtagagaggaccatcatggtttccttgttttcagtacaatataggcaaaac |
8862936 |
T |
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| Q |
127 |
tctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaaggg |
182 |
Q |
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|| ||||| | ||| |||||||||||||||||||| ||| | ||||||||| |
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| T |
8862937 |
tc---aggatgagtaca---ttgatcttgtgatgattcctcaactagttggaaggg |
8862986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 8866730 - 8866899
Alignment:
| Q |
54 |
gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatct |
153 |
Q |
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|||| ||| ||||||||||| |||||| | || |||||||| ||||| |||| ||||||||||||||| ||||| |||||||||||| || || | |
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| T |
8866730 |
gaatatgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactc---aggataaacaca---ttcatgt |
8866823 |
T |
|
| Q |
154 |
tgtgatgattccttaacgatttggaagggaaatttaataagaggttggtcaggtccacaatatgattctctgcact |
229 |
Q |
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| T |
8866824 |
tgtgatgattccttaacaagttggaaggggaatcgaataatcggttcgtaaggtccacatgacaattctctgcact |
8866899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 9126479 - 9126561
Alignment:
| Q |
88 |
atcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaa |
179 |
Q |
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||||||||||||| |||| |||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
9126479 |
atcatggttttctgattt---gtacaatacaggcaaaactc---aggataaacacattg---atcttgtgatgattccttaacgagttggaa |
9126561 |
T |
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