View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18170_high_22 (Length: 324)
Name: NF18170_high_22
Description: NF18170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18170_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 4150332 - 4150452
Alignment:
| Q |
7 |
tcgaataatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgact |
106 |
Q |
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| T |
4150332 |
tcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgact |
4150431 |
T |
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| Q |
107 |
attggtttaggaaaaacatag |
127 |
Q |
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| T |
4150432 |
attggtttaggaaaaacatag |
4150452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 4166101 - 4166221
Alignment:
| Q |
7 |
tcgaataatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgact |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4166101 |
tcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgact |
4166200 |
T |
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| Q |
107 |
attggtttaggaaaaacatag |
127 |
Q |
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| T |
4166201 |
attggtttaggaaaaacatag |
4166221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 4150524 - 4150645
Alignment:
| Q |
199 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
298 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4150524 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4150623 |
T |
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| Q |
299 |
caaaacttgaaattgctgaaaa |
320 |
Q |
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| T |
4150624 |
caaaacttgaaattgctgaaaa |
4150645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 4166293 - 4166414
Alignment:
| Q |
199 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
298 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4166293 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4166392 |
T |
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| Q |
299 |
caaaacttgaaattgctgaaaa |
320 |
Q |
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| T |
4166393 |
caaaacttgaaattgctgaaaa |
4166414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 13490242 - 13490165
Alignment:
| Q |
21 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
98 |
Q |
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| T |
13490242 |
ttggttctgctcaactggctagttgagcttgctaatattgaatcattgactgtgtcttcaactactcttcaggtactt |
13490165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 777486 - 777419
Alignment:
| Q |
31 |
tcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
98 |
Q |
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| T |
777486 |
tcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtactt |
777419 |
T |
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