View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18170_high_25 (Length: 316)
Name: NF18170_high_25
Description: NF18170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18170_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 34835747 - 34835441
Alignment:
| Q |
1 |
aatggtgctcatttgggtaatggttgttcttcatttgaatcttctaaccaaaagggacactcattgtttcatgaaatctttcttcaaggtttcccaattg |
100 |
Q |
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| T |
34835747 |
aatggtgctcatttgggtaatggttgttcttcatttgaatcttctcaccaaaagggacactcattgtttcatgaaatctttcttcaaggtttcccaattg |
34835648 |
T |
|
| Q |
101 |
tttatagatgggcttctgtaagtacatttcatgctttacacnnnnnnncttcaatttattaagatcaagatgatttcaattgattcatttgttgaacaga |
200 |
Q |
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| T |
34835647 |
tttatagatgggcttctgtaagtacatttcatgctttacactttttttcttcaatttattaagatcaagatgatttcaattgattcatttgttgaacaga |
34835548 |
T |
|
| Q |
201 |
tgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaattaataacggtccacgacgtccaggtga |
300 |
Q |
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| T |
34835547 |
tgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaattaataacggtccacggcgtccgggtga |
34835448 |
T |
|
| Q |
301 |
tattctt |
307 |
Q |
| |
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||||||| |
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| T |
34835447 |
tattctt |
34835441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 34821447 - 34821372
Alignment:
| Q |
59 |
actcattgtttcatgaaatctttcttcaaggtttcccaattgtttatagatgggcttctgtaagtacatttcatgc |
134 |
Q |
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| T |
34821447 |
actcattgtttcatgagatcatttttcaagggttcccaattgtttatagatgggcttctgtaagtacacttcatgc |
34821372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 35335468 - 35335534
Alignment:
| Q |
61 |
tcattgtttcatgaaatctttcttcaaggtttcccaattgtttatagatgggcttctgtaagtacat |
127 |
Q |
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||||||||||| || || ||| ||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
35335468 |
tcattgtttcaggagatattttcacaaggcttcccaattgtttatagatgggctcctgtaagtacat |
35335534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 35336285 - 35336366
Alignment:
| Q |
192 |
ttgaacagatgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaat |
273 |
Q |
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||||||||||||| | |||||||||| || ||||||||| || ||||| ||||||||||||||||| ||||||||||| |
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| T |
35336285 |
ttgaacagatgcaaaatgagggagatgccctgagaacagaatcacagctgcttagtacatttgattatgcatggaacacaat |
35336366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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