View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18170_high_29 (Length: 305)

Name: NF18170_high_29
Description: NF18170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18170_high_29
NF18170_high_29
[»] scaffold0576 (2 HSPs)
scaffold0576 (8-190)||(8065-8247)
scaffold0576 (167-292)||(8258-8383)
[»] chr6 (2 HSPs)
chr6 (8-190)||(15363294-15363476)
chr6 (167-292)||(15363487-15363612)
[»] chr3 (3 HSPs)
chr3 (8-190)||(7406093-7406275)
chr3 (167-292)||(7405957-7406082)
chr3 (52-170)||(1655887-1656005)
[»] chr8 (4 HSPs)
chr8 (8-170)||(17303648-17303810)
chr8 (167-283)||(25639937-25640053)
chr8 (25-170)||(17253304-17253447)
chr8 (116-167)||(17242420-17242471)
[»] chr7 (3 HSPs)
chr7 (8-170)||(4684596-4684758)
chr7 (167-292)||(4683767-4683892)
chr7 (231-269)||(24712070-24712108)
[»] chr2 (1 HSPs)
chr2 (8-170)||(31341091-31341253)


Alignment Details
Target: scaffold0576 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 8065 - 8247
Alignment:
Q  8 tccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacct 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8065 tccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacct 8164  T
Q  108 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8165 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 8247  T

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Target: scaffold0576; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 8258 - 8383
Alignment:
Q  167 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8258 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 8357  T
Q  267 aagtttcctcaattctaatgatgatg 292  Q
    ||||||||||||||||||||||||||    
T  8358 aagtttcctcaattctaatgatgatg 8383  T

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Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 15363294 - 15363476
Alignment:
Q  8 tccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacct 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15363294 tccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacct 15363393  T
Q  108 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15363394 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 15363476  T

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Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 15363487 - 15363612
Alignment:
Q  167 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15363487 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 15363586  T
Q  267 aagtttcctcaattctaatgatgatg 292  Q
    ||||||||||||||||||||||||||    
T  15363587 aagtttcctcaattctaatgatgatg 15363612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 7406275 - 7406093
Alignment:
Q  8 tccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacct 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7406275 tccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacct 7406176  T
Q  108 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406175 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 7406093  T

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Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 7406082 - 7405957
Alignment:
Q  167 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406082 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 7405983  T
Q  267 aagtttcctcaattctaatgatgatg 292  Q
    ||||||||||||||||||||||||||    
T  7405982 aagtttcctcaattctaatgatgatg 7405957  T

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Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 1655887 - 1656005
Alignment:
Q  52 taatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaa 151  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1655887 taatagttagtttaataattctaaataatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaa 1655986  T
Q  152 aatccaagggtctgcatgt 170  Q
    |||||||||||||||||||    
T  1655987 aatccaagggtctgcatgt 1656005  T

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Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 17303648 - 17303810
Alignment:
Q  8 tccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacct 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17303648 tccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacct 17303747  T
Q  108 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 170  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17303748 attttccagaataagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 17303810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 25639937 - 25640053
Alignment:
Q  167 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  25639937 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatatatatctcagcatctaccattccaagagcaacaccac 25640036  T
Q  267 aagtttcctcaattcta 283  Q
    |||||||||||||||||    
T  25640037 aagtttcctcaattcta 25640053  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 17253304 - 17253447
Alignment:
Q  25 gaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagta 124  Q
    |||||||||||||||  |||||||||||||||| ||| || ||| ||||||||| || ||||| ||||||||||||||||||||  ||||||||||||||    
T  17253304 gaatcataaatattgccgaagctctcctaatatctagattcatatttctaaacattggcacatcacaatgtcaaaggacaccta--ttccagaacaagta 17253401  T
Q  125 cattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 170  Q
    |||||||||||||||||||| | || ||||||||||||||||||||    
T  17253402 cattcaaggcaagaaaatgaccagtgaaatccaagggtctgcatgt 17253447  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 17242420 - 17242471
Alignment:
Q  116 gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgca 167  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  17242420 gaacaagtacattcaaggcaagaaaatgaccggtgaaatccaagggtctgca 17242471  T

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Target: chr7 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 4684758 - 4684596
Alignment:
Q  8 tccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacct 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  4684758 tccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattagaatgccaaaggacacct 4684659  T
Q  108 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684658 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 4684596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 4683892 - 4683767
Alignment:
Q  167 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 266  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4683892 atgtctattgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 4683793  T
Q  267 aagtttcctcaattctaatgatgatg 292  Q
    ||||||||||||||||||||||||||    
T  4683792 aagtttcctcaattctaatgatgatg 4683767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 24712108 - 24712070
Alignment:
Q  231 atatctcagcatctaccattccaagagtaacaccacaag 269  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  24712108 atatttcagcatctaccattctaagagtaacaccacaag 24712070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 31341253 - 31341091
Alignment:
Q  8 tccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacct 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31341253 tccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacct 31341154  T
Q  108 attttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 170  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  31341153 attttccagaacaagtgcattcaaggcaagaaaatgaaccgtaaaatccaagggtccgcatgt 31341091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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