View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18170_high_30 (Length: 305)
Name: NF18170_high_30
Description: NF18170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18170_high_30 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 32635393 - 32635150
Alignment:
| Q |
41 |
aaggaaatattgtctgggatttcagacaagaaaggaacatttgtaccaaataatatcaagtgttttacattcacgaaagcaggagtaggaagtactttat |
140 |
Q |
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| T |
32635393 |
aaggaaatgttgtctgggatttcagacaagaaaggaacatcattaccaaataatattaagtgttttacactcaggaaagcaggactaggaagtattttat |
32635294 |
T |
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| Q |
141 |
gtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggcaaagttttcaggaagatccacaagactatcactgacggg |
240 |
Q |
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| T |
32635293 |
gtaagatgatggaagagtcacgttcacctttcagtgaattcgcaagccagatacaattggcaaagttttcaggaagatccacaagactatcactgatagg |
32635194 |
T |
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| Q |
241 |
agataaaaaatattcaagattttttgtatgcaatattgatgatg |
284 |
Q |
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| T |
32635193 |
agataaaaaatattcaagattttttgtatgcaatattgatgatg |
32635150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 5605362 - 5605493
Alignment:
| Q |
103 |
ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca |
202 |
Q |
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| T |
5605362 |
ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa |
5605461 |
T |
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| Q |
203 |
aagttttcaggaagatccacaagactatcact |
234 |
Q |
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| T |
5605462 |
aagtttacaggaagatcaacaagacaatcact |
5605493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 5630008 - 5629877
Alignment:
| Q |
103 |
ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca |
202 |
Q |
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| T |
5630008 |
ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa |
5629909 |
T |
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| Q |
203 |
aagttttcaggaagatccacaagactatcact |
234 |
Q |
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| T |
5629908 |
aagtttacaggaagatcaacaagacaatcact |
5629877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 14406641 - 14406558
Alignment:
| Q |
201 |
caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatg |
284 |
Q |
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| T |
14406641 |
caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatg |
14406558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 13167114 - 13167080
Alignment:
| Q |
202 |
aaagttttcaggaagatccacaagactatcactga |
236 |
Q |
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| T |
13167114 |
aaagttttcaggaagatccacaagacaatcactga |
13167080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 6308451 - 6308488
Alignment:
| Q |
199 |
ggcaaagttttcaggaagatccacaagactatcactga |
236 |
Q |
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| T |
6308451 |
ggcaaagttttctggaagatccacaagacaatcactga |
6308488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 5553370 - 5553338
Alignment:
| Q |
202 |
aaagttttcaggaagatccacaagactatcact |
234 |
Q |
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| T |
5553370 |
aaagttttcaggaagatccacaagacaatcact |
5553338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 12212 - 12295
Alignment:
| Q |
201 |
caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatg |
284 |
Q |
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| T |
12212 |
caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatg |
12295 |
T |
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