View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18170_high_6 (Length: 426)

Name: NF18170_high_6
Description: NF18170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18170_high_6
NF18170_high_6
[»] chr1 (4 HSPs)
chr1 (1-401)||(11780115-11780517)
chr1 (208-380)||(10424593-10424765)
chr1 (210-380)||(1624838-1625008)
chr1 (297-356)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (7-392)||(17158540-17158930)
[»] chr6 (4 HSPs)
chr6 (100-398)||(14977513-14977814)
chr6 (97-265)||(11776308-11776479)
chr6 (209-265)||(9352421-9352477)
chr6 (217-265)||(24353638-24353686)
[»] chr2 (1 HSPs)
chr2 (97-398)||(12101771-12102070)
[»] chr5 (4 HSPs)
chr5 (97-393)||(5781889-5782188)
chr5 (97-380)||(19069420-19069706)
chr5 (271-368)||(17763963-17764060)
chr5 (208-265)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (208-375)||(16311632-16311799)
chr3 (208-375)||(18488416-18488583)
chr3 (208-375)||(18492626-18492793)
chr3 (197-360)||(19829018-19829181)
chr3 (208-346)||(16314023-16314161)
chr3 (208-346)||(18495017-18495155)
[»] chr8 (1 HSPs)
chr8 (208-364)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 11780517 - 11780115
Alignment:
Q  1 ccctattattgctagctcacacatggggccggttgttaattctacatcatcagttgttacttctcatatgacggtcca-atgagatggacatcatcatcg 99  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||  |||    |||||||||  |||    
T  11780517 ccctattattgctagctcacacatggggtcggttgttaattctacttcagcagttgttacttctcatatgacggtccctatgcccaggacatcattgtcg 11780418  T
Q  100 tcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttcccgg-ttg 198  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  11780417 tcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccccgattg 11780318  T
Q  199 catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcgg 298  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780317 catgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcgg 11780218  T
Q  299 atgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcatgatga 398  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11780217 atgatgtggaacataatcattcgcgcccacaggagctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcacgatga 11780118  T
Q  399 tgt 401  Q
    |||    
T  11780117 tgt 11780115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 380
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
Q  208 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 307  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  308 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 380  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||||||||||||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc 10424593  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 380
Target Start/End: Complemental strand, 1625008 - 1624838
Alignment:
Q  210 gcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaa 309  Q
    ||||| ||||||||| || |||| ||||| |||||||||||||| ||||| |||||     || || ||||| |||   ||||| |  ||||||||||||    
T  1625008 gcattttgagagagtagaacagttgcatctgacatcgcgggaggtgttggggaaccccacggtggatgatgtcactgttacgctttatgatgatgtggaa 1624909  T
Q  310 cataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 380  Q
    || |||  |||| |||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||||||    
T  1624908 cacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatc 1624838  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 30731478 - 30731537
Alignment:
Q  297 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgc 356  Q
    ||||| |||||||||| |||||  | |||||||||| |||||||||||||| ||||||||    
T  30731478 ggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgc 30731537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 17158930 - 17158540
Alignment:
Q  7 tattgctagctcacacatggggccggttgttaattctacatcatcagttgttacttctcatatgacggtcca-atgagatggacatcatcatcgtcaaca 105  Q
    |||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||  |||| ||||  |||     ||| ||||  |||||||||    
T  17158930 tattgctagctcacacatggggccggttgttacttctacttcagcagttgttacttctcagttgacagtccctatgcccaagacgtcattgtcgtcaaca 17158831  T
Q  106 tctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttcccggtt---gcatg 202  Q
     |||||||||||||||| |||||||||||||||||||||||||||||  |||||| ||| |||||||||||||||||||||||||||  |||   ||| |    
T  17158830 cctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcctagtttgcgcacg 17158731  T
Q  203 atgaagtgcattctgagagagt-ggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatg 301  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| | || ||||||||||    
T  17158730 atgaagtgcattctgagagagtgggatcagtcgcatccgatatcgcgggaggagttggagaaccctgtggttgacgatgttactgcgacactctcggatg 17158631  T
Q  302 atgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagca 392  Q
    ||||||| ||||||||||||| |||  || |  ||||||||||||| ||||| | |||||||||||||| |||||||||||||||| ||||    
T  17158630 atgtggagcataatcattcgcacccctagtagttggtggagagtcccaagggggaccatgagcatgtactacattcatcaattgttaagca 17158540  T

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Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 100 - 398
Target Start/End: Original strand, 14977513 - 14977814
Alignment:
Q  100 tcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttcccg-gttg 198  Q
    ||||||||||| ||||| ||| | || ||| ||||||| |  |||||||||||| || ||| |  |||||| |||||| ||||  |||| ||||  ||||    
T  14977513 tcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaagttgccagaagctacaccagtgattgagtttgtgtccccagttg 14977612  T
Q  199 c--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctc 296  Q
    |  | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||     ||||||||||||||| | ||||| ||    
T  14977613 cgcacgatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggaggaggtgcagatcccaacggttgacgatgttactgctacgctatc 14977712  T
Q  297 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcatgat 396  Q
      |||||||||||||||||||||||  ||| | ||| |||||||||||||| |||||| ||||||||||||| ||||||||||| |||||| ||||||||    
T  14977713 ttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaagggttcccatgagcatgttccacattcatccattgtttagcatgat 14977812  T
Q  397 ga 398  Q
    ||    
T  14977813 ga 14977814  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 265
Target Start/End: Complemental strand, 11776479 - 11776308
Alignment:
Q  97 tcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttcccg-g 195  Q
    |||||||  ||||||||||||||| | ||||| | ||||||||| ||||||  ||||||| ||| ||  | ||| |||||||| ||  |||||||||  |    
T  11776479 tcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttcccctg 11776380  T
Q  196 ttg--catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 265  Q
    |||  || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  11776379 ttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  209 tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 265  Q
    ||||||||||||||||||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  217 gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 265  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

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Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 97 - 398
Target Start/End: Original strand, 12101771 - 12102070
Alignment:
Q  97 tcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttcccggt 196  Q
    |||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | || ||| || | ||||||||||||| ||||||       
T  12101771 tcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagtgtttgaaattatttccccaa 12101870  T
Q  197 t---gcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgct 293  Q
    |   ||| ||||| |||||| ||||||||| ||||||  | ||| |||||||||||||||||||||||||||   | | ||||||||||||| | |  |     
T  12101871 ttgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggctgacgatgttactacgatac- 12101969  T
Q  294 ctcggatgatgtggaacata----atcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttga 389  Q
            ||||||||||||    ||||||||||||| | ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  12101970 --------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgtaccacattcatcaattgttga 12102061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 97 - 393
Target Start/End: Complemental strand, 5782188 - 5781889
Alignment:
Q  97 tcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttcccg-g 195  Q
    |||||||  ||||||||||||||| | || || |||||  | |  ||||||  ||||||||||| |   |||||||||||||| ||  |||||||||  |    
T  5782188 tcgtcaaactctttcagctttccattacacaatgtgttcaatagaatttctcctgaggagctgccatgtgctacgccagtgttagaggttgtttcccttg 5782089  T
Q  196 ttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgct 293  Q
    ||||  | ||||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   || ||    
T  5782088 ttgcgcacgatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttacact 5781989  T
Q  294 ctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcat 393  Q
     || |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| ||||||  || ||||||||    
T  5781988 ttctgatgatgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatcccttattgagcat 5781889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 97 - 380
Target Start/End: Complemental strand, 19069706 - 19069420
Alignment:
Q  97 tcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttcccg-g 195  Q
    |||||||  ||||||||||||||| | || || | ||||||||| ||||||  | ||||||||| ||  |||||||||||||| ||  || ||||||  |    
T  19069706 tcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttcccctg 19069607  T
Q  196 ttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgct 293  Q
    ||||  | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   || ||    
T  19069606 ttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttaccct 19069507  T
Q  294 ctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 380  Q
     ||  ||||||||||||| |||||||||  ||| ||||| |||||||||||||| ||||||  |||||||| | || ||||||||||    
T  19069506 ttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatc 19069420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 17763963 - 17764060
Alignment:
Q  271 gttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgt 368  Q
    ||||| ||||||||| | ||||| || ||||||||||||||||||||||   ||   | ||| |||||||||||||  |||||| |||||||||||||    
T  17763963 gttgatgatgttactgctacgctttctgatgatgtggaacataatcatttaagctggcgggagctggtggagagtctcaagggttcccatgagcatgt 17764060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  208 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 265  Q
    ||||||||| ||||||  ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 375
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
Q  208 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 307  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  308 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 375  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 16311799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 375
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
Q  208 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 307  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  308 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 375  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18488583  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 375
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
Q  208 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 307  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  308 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 375  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18492793  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 360
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
Q  197 tgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctc 296  Q
    |||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || ||    
T  19829181 tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc 19829082  T
Q  297 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccat 360  Q
     |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| |||||    
T  19829081 tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 346
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
Q  208 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 307  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  308 aacataatcattcgcgcccacaggatctggtggagagtc 346  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggagagtc 16314161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 346
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
Q  208 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 307  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  308 aacataatcattcgcgcccacaggatctggtggagagtc 346  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggagagtc 18495155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 364
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  208 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 307  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  308 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc 364  Q
    |||| ||||||||| |||| | |||  ||||||||||||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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