View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18170_high_8 (Length: 407)

Name: NF18170_high_8
Description: NF18170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18170_high_8
NF18170_high_8
[»] chr8 (10 HSPs)
chr8 (14-399)||(34176579-34176964)
chr8 (14-58)||(11761978-11762022)
chr8 (11-56)||(34177218-34177263)
chr8 (11-58)||(34214446-34214493)
chr8 (14-56)||(15230177-15230219)
chr8 (14-56)||(35634345-35634387)
chr8 (11-56)||(39474680-39474725)
chr8 (16-56)||(15230071-15230111)
chr8 (14-58)||(34213902-34213946)
chr8 (14-58)||(34665908-34665952)
[»] chr3 (20 HSPs)
chr3 (14-398)||(32716684-32717067)
chr3 (13-58)||(42855551-42855596)
chr3 (13-56)||(40788557-40788600)
chr3 (14-56)||(3469338-3469380)
chr3 (14-56)||(3469446-3469488)
chr3 (14-56)||(13948918-13948960)
chr3 (14-56)||(29118676-29118718)
chr3 (14-56)||(32716387-32716429)
chr3 (14-56)||(35643989-35644031)
chr3 (14-56)||(40788666-40788708)
chr3 (11-52)||(4322726-4322767)
chr3 (14-58)||(1756688-1756732)
chr3 (14-58)||(2944051-2944095)
chr3 (14-58)||(2944584-2944628)
chr3 (14-58)||(11026550-11026594)
chr3 (14-58)||(37249716-37249760)
chr3 (14-58)||(45278682-45278726)
chr3 (14-58)||(45279202-45279246)
chr3 (14-58)||(47857491-47857535)
chr3 (14-58)||(48189017-48189061)
[»] chr4 (18 HSPs)
chr4 (14-116)||(23455549-23455651)
chr4 (313-398)||(23455389-23455474)
chr4 (221-272)||(23455501-23455552)
chr4 (14-56)||(45463211-45463253)
chr4 (14-56)||(23455092-23455134)
chr4 (14-56)||(27069048-27069090)
chr4 (14-56)||(27069156-27069198)
chr4 (14-56)||(39666914-39666956)
chr4 (14-56)||(39701155-39701197)
chr4 (14-56)||(50503963-50504005)
chr4 (11-56)||(40316911-40316956)
chr4 (11-56)||(40326985-40327030)
chr4 (11-52)||(50751750-50751791)
chr4 (11-56)||(51859542-51859587)
chr4 (44-76)||(23535363-23535395)
chr4 (14-58)||(38982514-38982558)
chr4 (14-58)||(52816341-52816385)
chr4 (14-58)||(56556720-56556764)
[»] chr7 (12 HSPs)
chr7 (14-56)||(18855902-18855944)
chr7 (14-80)||(29144206-29144272)
chr7 (14-56)||(32068234-32068276)
chr7 (14-56)||(4226263-4226305)
chr7 (14-56)||(10600195-10600237)
chr7 (14-56)||(18087586-18087628)
chr7 (14-56)||(25628616-25628658)
chr7 (14-56)||(42618049-42618091)
chr7 (11-56)||(5455962-5456007)
chr7 (14-58)||(22661495-22661539)
chr7 (14-58)||(27480125-27480169)
chr7 (14-58)||(43124398-43124442)
[»] chr6 (9 HSPs)
chr6 (14-56)||(7160942-7160984)
chr6 (11-58)||(4117465-4117512)
chr6 (14-56)||(7905489-7905531)
chr6 (14-56)||(12065358-12065400)
chr6 (14-56)||(15913794-15913836)
chr6 (14-56)||(21836168-21836210)
chr6 (14-55)||(7161051-7161092)
chr6 (14-58)||(14657127-14657171)
chr6 (14-58)||(33400104-33400148)
[»] chr1 (12 HSPs)
chr1 (11-56)||(49955482-49955527)
chr1 (11-58)||(46282711-46282758)
chr1 (14-56)||(7371428-7371470)
chr1 (14-56)||(8898655-8898697)
chr1 (14-56)||(17189092-17189134)
chr1 (14-56)||(31058303-31058345)
chr1 (14-56)||(35040860-35040902)
chr1 (14-56)||(40714582-40714624)
chr1 (14-56)||(49955593-49955635)
chr1 (14-58)||(46282209-46282253)
chr1 (14-58)||(49093179-49093223)
chr1 (14-58)||(49093731-49093775)
[»] chr2 (13 HSPs)
chr2 (14-58)||(39936493-39936537)
chr2 (11-61)||(199143-199193)
chr2 (14-56)||(6588821-6588863)
chr2 (14-56)||(8710606-8710648)
chr2 (14-56)||(8710714-8710756)
chr2 (14-56)||(11830502-11830544)
chr2 (14-56)||(15604585-15604627)
chr2 (11-56)||(25624353-25624398)
chr2 (14-55)||(41587372-41587413)
chr2 (14-58)||(20983179-20983223)
chr2 (14-58)||(21103219-21103263)
chr2 (14-58)||(29957955-29957999)
chr2 (14-58)||(29958465-29958509)
[»] chr5 (10 HSPs)
chr5 (11-58)||(36476900-36476947)
chr5 (14-56)||(17544186-17544228)
chr5 (14-56)||(17544294-17544336)
chr5 (14-56)||(20153056-20153098)
chr5 (14-55)||(21287904-21287945)
chr5 (14-58)||(20072259-20072303)
chr5 (14-58)||(20072787-20072831)
chr5 (14-58)||(36477294-36477338)
chr5 (14-58)||(39181195-39181239)
chr5 (14-58)||(39181714-39181758)
[»] scaffold0771 (1 HSPs)
scaffold0771 (14-56)||(1058-1100)
[»] scaffold0328 (2 HSPs)
scaffold0328 (14-56)||(11278-11320)
scaffold0328 (14-56)||(11386-11428)
[»] scaffold0775 (1 HSPs)
scaffold0775 (14-58)||(5100-5144)
[»] scaffold0128 (1 HSPs)
scaffold0128 (14-54)||(19995-20035)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 34176579 - 34176964
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccctccttcttcctcatcctcttcctcttcatcatcaactaataatccacccataacct 113  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176579 tcatcaaattagcaaaatggcttgggaaaggacaaaaatacccctccttcttcctcatcctcttcctcttcatcatcaactaataatccacccataacct 34176678  T
Q  114 ccatttcttcaacaaatccaaacaaaaccttcaacccacaccgcaaatttcactttcctttgtaaaattctcattttaaacacccaaatcaattcactgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176679 ccatttcttcaacaaatccaaacaaaaccttcaacccacaccgcaaattccactttcctttgtaaaattctcattttaaacacccaaatcaattcactgt 34176778  T
Q  214 caatccttccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaacaaaggcatggtaatatgtgtttggaagagaaaggaaaact 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34176779 caatccttccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaacaaaggcatggtaatatgtgtttgaaagagaaaggaaaact 34176878  T
Q  314 atagaaatgagaggaaatagctgcaacatcaatcacattcaacactgccgcaaatcgatctacgtcgtagttaccatcatctttgg 399  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||    
T  34176879 atagaaatgagaggaaataactgcaacatcaatcacattcatcactgccgcaaatcgatctacgtcgccgttaccgtcatctttgg 34176964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 11761978 - 11762022
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||    
T  11761978 tcatcaaattagcaaaatagcatgggaatggacaaaaatacccct 11762022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 34177263 - 34177218
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||    
T  34177263 acatcatcaaattagcaaaatggcatgggaatggacaaaaataccc 34177218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 34214493 - 34214446
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    ||||||||||||||||||||| || ||||||  |||||||||||||||    
T  34214493 acatcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 34214446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 15230219 - 15230177
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  15230219 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 15230177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 35634387 - 35634345
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  35634387 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 35634345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 39474680 - 39474725
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||||| || ||| || ||||||||||||||    
T  39474680 acatcatcaaattagcaaaatggcatggaaatggacaaaaataccc 39474725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 15230071 - 15230111
Alignment:
Q  16 atcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||| || |||||| ||||||||||||||    
T  15230071 atcaaattagcaaaatggcatgggaatggacaaaaataccc 15230111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 34213902 - 34213946
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  34213902 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 34213946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 34665908 - 34665952
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  34665908 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 34665952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 32717067 - 32716684
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccctccttcttcctcatcctcttcctcttcatcatcaactaataatccacccataacct 113  Q
    ||||||||||||||||||  | | |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32717067 tcatcaaattagcaaaatgacataggaatggacaaaaatacccctccttcttcctcatcctcttccacttcatcatcaactaataatccacccataacct 32716968  T
Q  114 ccatttcttcaacaaatccaaacaaaaccttcaacccacaccgcaaatttcactttcctttgtaaaattctcattttaaacacccaaatcaattcactgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32716967 ccatttcttcaacaaatccaaacaaaaccttcaacccacaccgcaaattccactttcctttgtaaaattctcattttaaacacccaaatcaattcattgt 32716868  T
Q  214 caatccttccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaacaaaggcatggtaatatgtgtttggaagagaaaggaaaact 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |    
T  32716867 caatccttccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaacaaaggc-tggtaatatgtgtttgaaagagaaaggaaaatt 32716769  T
Q  314 atagaaatgagaggaaatagctgcaacatcaatcacattcaacactgccgcaaatcgatctacgtcgtagttaccatcatctttg 398  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||| ||||    
T  32716768 atagaaatgagtggaaatagctgcaacatcaatcacattcaacactgccgcaaatcgatctacgtcgccgttaccgtcatatttg 32716684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 42855596 - 42855551
Alignment:
Q  13 atcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  42855596 atcatcaaattagcaaaatggcttgggaaaggataaaaatacccct 42855551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 40788557 - 40788600
Alignment:
Q  13 atcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||| || |||||| ||||||||||||||    
T  40788557 atcatcaaattagcaaaatggcatgggaatggacaaaaataccc 40788600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 3469338 - 3469380
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  3469338 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 3469380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 3469488 - 3469446
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  3469488 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 3469446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 13948918 - 13948960
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  13948918 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 13948960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 29118676 - 29118718
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  29118676 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 29118718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 32716387 - 32716429
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  32716387 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 32716429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 35643989 - 35644031
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  35643989 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 35644031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 40788708 - 40788666
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  40788708 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 40788666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 4322726 - 4322767
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaat 52  Q
    |||||||||||||| ||||||||| |||||| ||||||||||    
T  4322726 acatcatcaaattaacaaaatagcatgggaatggacaaaaat 4322767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 1756688 - 1756732
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  1756688 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 1756732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 2944051 - 2944095
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  2944051 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 2944095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 2944628 - 2944584
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  2944628 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 2944584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 11026594 - 11026550
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  11026594 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 11026550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 37249760 - 37249716
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  37249760 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 37249716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 45278682 - 45278726
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  45278682 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 45278726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 45279246 - 45279202
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  45279246 tcatcaaattagcaaaatgacatgggaatggacaaaaatacccct 45279202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 47857535 - 47857491
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||| |||||||||||||||| | |||||||||||| ||||||||    
T  47857535 tcataaaattagcaaaatagcataggaaaggacaaatatacccct 47857491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 48189061 - 48189017
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  48189061 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 48189017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 23455651 - 23455549
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccctccttcttcctcatcctcttcctcttcatcatcaactaataatccacccataacct 113  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  23455651 tcatcaaattagcaaaatgacatgggaatggacaaaaatacccctccttcttcctcatcctcttccacttcatcgtcaactaataatccacccataacct 23455552  T
Q  114 cca 116  Q
    |||    
T  23455551 cca 23455549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 398
Target Start/End: Complemental strand, 23455474 - 23455389
Alignment:
Q  313 tatagaaatgagaggaaatagctgcaacatcaatcacattcaacactgccgcaaatcgatctacgtcgtagttaccatcatctttg 398  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| |||| ||||    
T  23455474 tatagaaatgagtggaaatagctgcaacatcaatcacattcaacactgccgtaaatcgatctacgtcgccgttaccgtcatatttg 23455389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 23455552 - 23455501
Alignment:
Q  221 tccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaa 272  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23455552 tccaatatcaacgtgttcaaactcatcaaaatccatcacccatatccaaaaa 23455501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 45463211 - 45463253
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  45463211 tcatcaaattagcaaaatagcatgggaatggacaaaaataccc 45463253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 23455092 - 23455134
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  23455092 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 23455134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 27069048 - 27069090
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  27069048 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 27069090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 27069198 - 27069156
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  27069198 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 27069156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 39666914 - 39666956
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  39666914 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 39666956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 39701197 - 39701155
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||||  |||||| ||||||||||||||    
T  39701197 tcatcaaattagcaaaatagtatgggaatggacaaaaataccc 39701155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 50503963 - 50504005
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  50503963 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 50504005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 40316956 - 40316911
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||||||  | |||||| ||||||||||||||    
T  40316956 acatcatcaaattagcaaaatgacatgggaatggacaaaaataccc 40316911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 40327030 - 40326985
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||||||  | |||||| ||||||||||||||    
T  40327030 acatcatcaaattagcaaaatgacatgggaatggacaaaaataccc 40326985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 50751791 - 50751750
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaat 52  Q
    |||||||||||||| ||||||||| |||||| ||||||||||    
T  50751791 acatcatcaaattaacaaaatagcatgggaatggacaaaaat 50751750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 51859542 - 51859587
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||||| || || ||| ||||||||||||||    
T  51859542 acatcatcaaattagcaaaatggcatgagaatggacaaaaataccc 51859587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 23535395 - 23535363
Alignment:
Q  44 gacaaaaatacccctccttcttcctcatcctct 76  Q
    |||||||||||||||||||||||||| ||||||    
T  23535395 gacaaaaatacccctccttcttcctcttcctct 23535363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 38982558 - 38982514
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  38982558 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 38982514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 52816385 - 52816341
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  52816385 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 52816341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 56556720 - 56556764
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  56556720 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 56556764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 18855944 - 18855902
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  18855944 tcatcaaattagcaaaatagcatgggaaaggacaaaaataccc 18855902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 29144272 - 29144206
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccctccttcttcctcatcctcttcct 80  Q
    |||||||||||||||||| |  |||||| ||||||||||||  ||||| | ||||||||||||||||    
T  29144272 tcatcaaattagcaaaattgtatgggaatggacaaaaatacatctcctgcgtcctcatcctcttcct 29144206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 32068234 - 32068276
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  32068234 tcatcaaattagcaaaatggcatgggaaaggacaaaaataccc 32068276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 4226263 - 4226305
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  4226263 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 4226305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 10600237 - 10600195
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  10600237 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 10600195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 18087628 - 18087586
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  18087628 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 18087586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 25628616 - 25628658
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  25628616 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 25628658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 42618049 - 42618091
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  42618049 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 42618091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 5455962 - 5456007
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||||| || || ||| ||||||||||||||    
T  5455962 acatcatcaaattagcaaaatggcatgagaatggacaaaaataccc 5456007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 22661495 - 22661539
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  22661495 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 22661539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 27480125 - 27480169
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  27480125 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 27480169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 43124442 - 43124398
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  43124442 tcatcaaattagcaaaatgacatgggaatggacaaaaatacccct 43124398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 7160942 - 7160984
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  7160942 tcatcaaattagcaaaatagcatgggaatggacaaaaataccc 7160984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 4117512 - 4117465
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    ||||||||||||||||||||| || ||||||  |||||||||||||||    
T  4117512 acatcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 4117465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 7905531 - 7905489
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  7905531 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 7905489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 12065358 - 12065400
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  12065358 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 12065400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 15913836 - 15913794
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  15913836 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 15913794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 21836168 - 21836210
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  21836168 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 21836210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 7161092 - 7161051
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacc 55  Q
    |||||||||||||||||| || |||||| |||||||||||||    
T  7161092 tcatcaaattagcaaaattgcatgggaatggacaaaaatacc 7161051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 14657171 - 14657127
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  14657171 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 14657127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 33400104 - 33400148
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  33400104 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 33400148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 49955482 - 49955527
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||    
T  49955482 acatcatcaaattagcaaaatggcatgggaatggacaaaaataccc 49955527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 46282758 - 46282711
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    ||||||||||||||||||||| || ||||||  |||||||||||||||    
T  46282758 acatcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 46282711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 7371428 - 7371470
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  7371428 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 7371470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 8898655 - 8898697
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  8898655 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 8898697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 17189092 - 17189134
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  17189092 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 17189134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 31058345 - 31058303
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  31058345 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 31058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 35040902 - 35040860
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  35040902 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 35040860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 40714582 - 40714624
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  40714582 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 40714624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 49955635 - 49955593
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  49955635 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 49955593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 46282209 - 46282253
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  46282209 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 46282253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 49093179 - 49093223
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  49093179 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 49093223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 49093775 - 49093731
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  49093775 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 49093731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 39936537 - 39936493
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||| |||||||||||||||||||    
T  39936537 tcatcaaattagcaaaatggcatggaaaaggacaaaaatacccct 39936493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 199143 - 199193
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaatacccctcct 61  Q
    |||||||||||||| ||||| ||| || ||| |||||||||||||||||||    
T  199143 acatcatcaaattaacaaaagagcatgcgaatggacaaaaatacccctcct 199193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 6588821 - 6588863
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  6588821 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 6588863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 8710606 - 8710648
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  8710606 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 8710648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 8710756 - 8710714
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  8710756 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 8710714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 11830502 - 11830544
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  11830502 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 11830544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 15604627 - 15604585
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  15604627 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 15604585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 25624398 - 25624353
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||| |||||| || |||||| ||||||||||||||    
T  25624398 acatcatcaaattaacaaaatggcatgggaatggacaaaaataccc 25624353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 41587372 - 41587413
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacc 55  Q
    |||||||||||||||||| || |||||| |||||||||||||    
T  41587372 tcatcaaattagcaaaattgcatgggaatggacaaaaatacc 41587413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 20983223 - 20983179
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  20983223 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 20983179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 21103219 - 21103263
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  21103219 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 21103263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 29957955 - 29957999
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  29957955 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 29957999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 29958509 - 29958465
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  29958509 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 29958465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 36476900 - 36476947
Alignment:
Q  11 acatcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    ||||||||||||||||||||| || ||||||  |||||||||||||||    
T  36476900 acatcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 36476947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 17544186 - 17544228
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  17544186 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 17544228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 17544336 - 17544294
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  17544336 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 17544294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 20153056 - 20153098
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  20153056 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 20153098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 21287945 - 21287904
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacc 55  Q
    |||||||||||||||||| || |||||| |||||||||||||    
T  21287945 tcatcaaattagcaaaatggcatgggaatggacaaaaatacc 21287904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 20072259 - 20072303
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  20072259 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 20072303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 20072831 - 20072787
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  20072831 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 20072787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 36477338 - 36477294
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  36477338 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 36477294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 39181195 - 39181239
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  39181195 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 39181239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 39181758 - 39181714
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    |||||||||||||||||| || ||||||  |||||||||||||||    
T  39181758 tcatcaaattagcaaaatggcatgggaattgacaaaaatacccct 39181714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 1058 - 1100
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  1058 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 1100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 11278 - 11320
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  11278 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 11320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 11428 - 11386
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaataccc 56  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  11428 tcatcaaattagcaaaatggcatgggaatggacaaaaataccc 11386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 5100 - 5144
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatacccct 58  Q
    ||||||||||||||||||  | ||| |||||||||||||||||||    
T  5100 tcatcaaattagcaaaatgacatggaaaaggacaaaaatacccct 5144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 19995 - 20035
Alignment:
Q  14 tcatcaaattagcaaaatagcttgggaaaggacaaaaatac 54  Q
    |||||||||||||||||| || |||||| ||||||||||||    
T  19995 tcatcaaattagcaaaatggcatgggaatggacaaaaatac 20035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University