View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18171_low_1 (Length: 521)

Name: NF18171_low_1
Description: NF18171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18171_low_1
NF18171_low_1
[»] chr5 (1 HSPs)
chr5 (21-511)||(35280792-35281284)
[»] chr1 (1 HSPs)
chr1 (77-265)||(42485883-42486081)
[»] chr3 (1 HSPs)
chr3 (85-265)||(49198545-49198735)
[»] chr4 (2 HSPs)
chr4 (77-247)||(41487979-41488163)
chr4 (77-259)||(22157736-22157928)
[»] chr2 (4 HSPs)
chr2 (77-186)||(12772470-12772579)
chr2 (77-186)||(9127833-9127942)
chr2 (78-166)||(32070362-32070450)
chr2 (121-186)||(9760600-9760665)
[»] chr8 (1 HSPs)
chr8 (83-259)||(42742984-42743170)
[»] chr7 (4 HSPs)
chr7 (77-186)||(35675000-35675109)
chr7 (78-191)||(22621776-22621889)
chr7 (82-186)||(9903180-9903282)
chr7 (196-257)||(35675129-35675190)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 21 - 511
Target Start/End: Original strand, 35280792 - 35281284
Alignment:
Q  21 tctaaatttgttctta-ctctcccatatcttgatgttaaaagatgcatttatttcacgagcaatgctatatagtgggaaagaaaacacagcgaaagcttc 119  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  35280792 tctaaatttgttcttaactctcccatatcttgatgctaaaagatgcatttatttcacgagcaatgctatacagtgggaaagaaaacacagtgaaagcttc 35280891  T
Q  120 ccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgtttgctgaaaaaatggaaatta----------ctccaatcaaaact 209  Q
    || || |||||||||||  | ||| |||||||||||||||||||| |||| ||| ||||||||||||| |||||||          ||||||||||||||    
T  35280892 ccaaagcaaaactaaccaattacagtttgatgtttggtggaatacgaggaagtgcttgctgaaaaaatagaaattaagaaataaacctccaatcaaaact 35280991  T
Q  210 aaccagctattgtcgtggtctattcgcttgatattctctcacgagaaaaaatatttatcttatttaacaatcccaaattacaagttccattcttaagcag 309  Q
    ||||||         ||||||||||||||||||||||| | |||||||| | ||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  35280992 aaccag---------tggtctattcgcttgatattctcccgcgagaaaacacatttcccttatttaacaatcccaaattgcaagttccattcttaagcag 35281082  T
Q  310 caaatgtataccctttaagaatttactattactccatcaaagtaaactcggtttcatttttgaatttactaaaattataaattataatcaggtcaattca 409  Q
    |||||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35281083 caaatgtacactctttaagaatttactatcactccaccaaagtaaactcggtttcattttcgaatttactaaaattataaattataatcaggtcaattca 35281182  T
Q  410 aaattaatataactttgaccattacaacgagttcattcaagtaaactcatttcatttaaacaattttgacaaaacttgtagatatcacagttcaatgatg 509  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35281183 aaattaatataactctgatcattacaacgagttcattcaagtaaactcatttcatttaaacaattttgacaaaacttgtagatatcacagttcaatgatg 35281282  T

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Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 42486081 - 42485883
Alignment:
Q  77 gagcaatgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgttt 176  Q
    |||| ||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||| |  ||| | |||||||||||| |||||||||||||||||||    
T  42486081 gagcgatgctatatagtgtgaaagaaaacacaacgaaaacttcctgaaccaaaactaatcaatcatagtttgatgtttggcggaatacaaggaggtgttt 42485982  T
Q  177 gctgaaaaaatggaaatta----------ctccaatcaaaactaaccagctattgtcgtggtctattcgcttgatattctctcacgagaaaaaatattt 265  Q
    ||||||||||  |||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42485981 gctgaaaaaacagaaattaagaaataaacctccaatcaaaactaaccagctattgtcgtggtctattcgcttgatattctctcacgagaaaaaacattt 42485883  T

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Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 85 - 265
Target Start/End: Original strand, 49198545 - 49198735
Alignment:
Q  85 ctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgttt---ggtggaatacaaggaggtgtttgctga 181  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||   | ||| ||||||||||   || |||||||||||||||| |||||||    
T  49198545 ctatatagtgtgaaagaaaacatagcgaaagcttcccgaaccaaaactaactaattacagtttgatgtttggcggcggaatacaaggaggtgcttgctga 49198644  T
Q  182 aaaaatggaaatta-------ctccaatcaaaactaaccagctattgtcgtggtctattcgcttgatattctctcacgagaaaaaatattt 265  Q
    |||||  ||||| |       |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  49198645 aaaaacagaaatgaaataaacctccaatcaaaactaaccagatattgtcgtggtctattcgcttgatattctctagcgagaaaaaacattt 49198735  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 41488163 - 41487979
Alignment:
Q  77 gagcaatgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgttt 176  Q
    |||| ||||||||||||| |||| |||| | || |||||||||||||||||||||||| |  |||||||||||||||||  |||||||||||||||||||    
T  41488163 gagcgatgctatatagtgtgaaataaaatatagtgaaagcttcccgaaccaaaactaatcaatcacaatttgatgtttgacggaatacaaggaggtgttt 41488064  T
Q  177 gctg----aaaaaatggaaatta----------ctccaatcaaaactaaccagctattgtcgtggtctattcgcttgatattctc 247  Q
    | ||    || ||| ||||||||          |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  41488063 gttgggaaaataaaaggaaattaagaaataaacctccaatcaaaactaatcagctattgtcgtgctctattcgcttgatattctc 41487979  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 259
Target Start/End: Complemental strand, 22157928 - 22157736
Alignment:
Q  77 gagcaatgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgttt 176  Q
    |||| |||| |||||||||||||||||||| ||| |||||||||| || ||||||||| |  ||||| ||||  ||||||  |||||||| |||||||||    
T  22157928 gagcgatgccatatagtgggaaagaaaacatagcaaaagcttcccaaatcaaaactaatcaatcacagtttgcagtttggctgaatacaaagaggtgttt 22157829  T
Q  177 gctgaaaaaatggaaat---------tact-ccaatcaaaactaaccagctattgtcgtggtctattcgcttgatattctctcacgagaaaaa 259  Q
    |||||||||| | ||||          ||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||  ||||||||    
T  22157828 gctgaaaaaaagaaaatcaaggaataaactaccaatcaaaactaaccagctattgtcgtggtcgattcgcttgacattctctcgggagaaaaa 22157736  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 12772579 - 12772470
Alignment:
Q  77 gagcaatgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgttt 176  Q
    |||| ||||||||||||  ||||||||||| ||| ||||||||||||| |||||||||||  |||||||||| ||||| |  ||||||||||||||||||    
T  12772579 gagcgatgctatatagtatgaaagaaaacatagcaaaagcttcccgaatcaaaactaaccaatcacaatttgttgtttagcagaatacaaggaggtgttt 12772480  T
Q  177 gctgaaaaaa 186  Q
    ||||||||||    
T  12772479 gctgaaaaaa 12772470  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 9127942 - 9127833
Alignment:
Q  77 gagcaatgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgttt 176  Q
    |||| ||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||  |||||||||| |||||||   |||||||||||||||||    
T  9127942 gagcgatgctatatagtgtgaaagaaaacatagcgaaagcatcccgaatcaaaactaaccaatcacaatttgttgtttggcaaaatacaaggaggtgttt 9127843  T
Q  177 gctgaaaaaa 186  Q
     | |||||||    
T  9127842 acggaaaaaa 9127833  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 32070362 - 32070450
Alignment:
Q  78 agcaatgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaa 166  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| || ||||| |||||  | ||| |||| ||||||| |||||||||    
T  32070362 agcaatgctatatagtggtaaagaaaacacagcgaatgcttcccaaaacaaaattaaccaatgacagtttgttgtttggcggaatacaa 32070450  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 9760665 - 9760600
Alignment:
Q  121 cgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgtttgctgaaaaaa 186  Q
    |||| |||||||||||  |||||||||| |||||||   ||||||||||||||||| | |||||||    
T  9760665 cgaatcaaaactaaccaatcacaatttgctgtttggcaaaatacaaggaggtgtttacggaaaaaa 9760600  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 259
Target Start/End: Complemental strand, 42743170 - 42742984
Alignment:
Q  83 tgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgtttgctgaa 182  Q
    |||||||||||| ||||||| ||| ||||||||| ||||||| ||||||||||   ||||| |||| ||||||| ||||||||||||||||||||| |||    
T  42743170 tgctatatagtgtgaaagaatacatagcgaaagcatcccgaatcaaaactaactaatcacagtttgctgtttggcggaatacaaggaggtgtttgcggaa 42743071  T
Q  183 aaaatggaaatta----------ctccaatcaaaactaaccagctattgtcgtggtctattcgcttgatattctctcacgagaaaaa 259  Q
    |||| |||||| |          |||| ||||||||||  ||||||||| ||||||  |||||| |||||||||||| | |||||||    
T  42743070 aaaacggaaatcaataaataaacctcccatcaaaactatacagctattgccgtggtgcattcgcctgatattctctcgcaagaaaaa 42742984  T

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Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 35675000 - 35675109
Alignment:
Q  77 gagcaatgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgttt 176  Q
    |||| ||| ||||||||| ||||||||||| ||||||||| ||||||| |||||||||||  |||||||||| |||||||   |||||||||||||||||    
T  35675000 gagcgatggtatatagtgtgaaagaaaacatagcgaaagcatcccgaatcaaaactaaccaatcacaatttgctgtttggcaaaatacaaggaggtgttt 35675099  T
Q  177 gctgaaaaaa 186  Q
     | |||||||    
T  35675100 acggaaaaaa 35675109  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 22621776 - 22621889
Alignment:
Q  78 agcaatgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgtttg 177  Q
    |||||||||||||| || ||||||||| | ||||||||| ||| ||| |||||| || |  ||||| |||| ||||||   |||||||||||||||||||    
T  22621776 agcaatgctatataatgtgaaagaaaatatagcgaaagcatcctgaatcaaaaccaatcaatcacagtttgctgtttgacagaatacaaggaggtgtttg 22621875  T
Q  178 ctgaaaaaatggaa 191  Q
    | ||||||||||||    
T  22621876 cagaaaaaatggaa 22621889  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 9903282 - 9903180
Alignment:
Q  82 atgctatatagtgggaaagaaaacacagcgaaagcttcccgaaccaaaactaaccggtcacaatttgatgtttggtggaatacaaggaggtgtttgctga 181  Q
    ||||||||||||| ||||||||||||||||||||| | |  ||   ||||||||   ||||| |||| ||||||| ||| |||||||||||||||| |||    
T  9903282 atgctatatagtgtgaaagaaaacacagcgaaagcat-cttaaattaaactaactaatcacagtttgctgtttggcggagtacaaggaggtgtttg-tga 9903185  T
Q  182 aaaaa 186  Q
    |||||    
T  9903184 aaaaa 9903180  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 35675129 - 35675190
Alignment:
Q  196 ctccaatcaaaactaaccagctattgtcgtggtctattcgcttgatattctctcacgagaaa 257  Q
    ||||||| | ||||| || |||||||||||||| |||| |||||| |||||||||| |||||    
T  35675129 ctccaattacaactagcccgctattgtcgtggtgtatttgcttgacattctctcactagaaa 35675190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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