View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18172_high_15 (Length: 306)
Name: NF18172_high_15
Description: NF18172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18172_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7413608 - 7413385
Alignment:
| Q |
1 |
tgtttgttaggttaagatagcataatatttatgtcatttgaatatcaatttatacagagagaaaaagaacagctccatgttgaatttattaagcttgtaa |
100 |
Q |
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| T |
7413608 |
tgtttgttaggttaagatagcatagtatttatgtcatttgaatatcaatttatacagagagaaaaagaacagctccatgttgaattcattaagcttgtaa |
7413509 |
T |
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| Q |
101 |
gacaactgatatgaaacaaaagttggaatgagagattaggcaactaaaaggattactaactgcgttgaataacacaaaaggacaacaaagagttagaaga |
200 |
Q |
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| T |
7413508 |
gacaactgatatgaaacaaaagttggaatgggagattaggcaactaaaaggattactaactgcgttgaataacacaaagggacaacaaagagttagaaga |
7413409 |
T |
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| Q |
201 |
tgatgatgttttgaataaaataaa |
224 |
Q |
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| T |
7413408 |
tgatgatgttttggataaaataaa |
7413385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 7413082 - 7413379
Alignment:
| Q |
1 |
tgtttgttaggttaagat-agcataatatttatgtcatttgaatatcaatttatacagagaga---aaaagaacagctccatgttgaatttattaagctt |
96 |
Q |
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| T |
7413082 |
tgtttgttaggttaaaattagcatagtatttatgccatttgaatatcaatttatacaaagagagaaaaaagaatagctccatgttgaattcgttaagctt |
7413181 |
T |
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| Q |
97 |
gtaagacaactg-atatgaaacaaaagttggaatgagagattaggcaactaaaaggattactaactgcgttgaataacacaaaaggacaacaaagagtta |
195 |
Q |
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| T |
7413182 |
gtaagacaactggatatgaaacaaaagtttgaatgagtgattgggcaactaaaaggatcactaactgcgttgaataacac-aagggacaagaaagattta |
7413280 |
T |
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| Q |
196 |
gaagatgatgatg-ttttgaataaaataaagtacttgcagatggaattgaaggaaaagcaagagttccttcaagcatgcgaagagttgaaccaaatgat |
293 |
Q |
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| T |
7413281 |
gaagatgatgaagtttttggataaaataaattctttgcagatggaattgaaagaaaaggaagagttacttcaagcctgcgagggcctgaaccaaatgat |
7413379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 30495558 - 30495734
Alignment:
| Q |
1 |
tgtttgttaggttaa-gatagcataatatttatgtcatttgaatatcaatttata--cagagagaaaaa-gaacagctccatgttgaatttattaagctt |
96 |
Q |
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| T |
30495558 |
tgtttgttaggtcaacgttagcatagtatttatgtcattcaaatatcaatttatatacagggagaaaaaagaacaacttcatgttgaattcgttaagctt |
30495657 |
T |
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| Q |
97 |
gtaagacaactg-atatgaaacaaaagttggaatgagagattaggcaactaaaaggattactaactgcgttgaataa |
172 |
Q |
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| T |
30495658 |
gtaagacaactggatatgaaacaaaagttggaatgggagattgggcaactaaaaggatcactaattgtgttgaataa |
30495734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 30446936 - 30447068
Alignment:
| Q |
38 |
ttgaatatcaatttatacagagagaaaaagaacagctccatgttgaatttattaagcttgtaagacaact-gatatgaaacaaaagttggaatgagagat |
136 |
Q |
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| T |
30446936 |
ttgaatttctatttatacagaaacaaaaagaacagctccatgctaaaatcattcagcttgaaagacaactggatatgaaacaaaagctggaactggagat |
30447035 |
T |
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| Q |
137 |
taggcaactaaaaggattactaactgcgttgaa |
169 |
Q |
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| T |
30447036 |
tcagcaactaaaaggatcactaagtgtgttgaa |
30447068 |
T |
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