View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18172_high_4 (Length: 371)

Name: NF18172_high_4
Description: NF18172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18172_high_4
NF18172_high_4
[»] chr6 (3 HSPs)
chr6 (20-365)||(17075410-17075755)
chr6 (147-365)||(11053484-11053702)
chr6 (21-151)||(11064036-11064166)
[»] chr8 (3 HSPs)
chr8 (21-282)||(17683905-17684166)
chr8 (36-195)||(36159902-36160061)
chr8 (314-365)||(17684198-17684249)
[»] chr1 (1 HSPs)
chr1 (21-364)||(26741535-26741878)
[»] chr4 (2 HSPs)
chr4 (23-284)||(10559741-10560002)
chr4 (309-365)||(10558434-10558490)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 17075755 - 17075410
Alignment:
Q  20 gacatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctc 119  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| |    
T  17075755 gacatcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctccc 17075656  T
Q  120 gaagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgg 219  Q
    ||||||||| |  | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| | ||| | ||  || |||||||| |    
T  17075655 gaagaaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctag 17075556  T
Q  220 gcaaccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctccttataactattgaactggatttagcaaaaggccg 319  Q
    ||| |||||||||||| |||| |||||  ||||  || ||||||||||| ||||||||||||| | |  |||| || | ||||||||  ||||  |||||    
T  17075555 gcagccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccg 17075456  T
Q  320 caccactttcttaaccttctttcttgccgaagaaataacaccagcg 365  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  17075455 caccactttcttaaccttcttccttgccgaagaaataacaccagcg 17075410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 365
Target Start/End: Complemental strand, 11053702 - 11053484
Alignment:
Q  147 agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa 246  Q
    ||||| || |||||||||||||| ||||||||||||||||| || || | || ||||| ||| |||||||| ||||||||||||||||| ||||||||||    
T  11053702 agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa 11053603  T
Q  247 ataccggatgccgcaaaattccattcactttcttcctccttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg 345  Q
      ||||  ||||||| ||  ||||||||||||||||   || |    |  || || |||||  |||| ||||||||||||||||||||||||||||||||    
T  11053602 tcaccgagtgccgcagaaccccattcactttcttcc-gattgtttgcacagataccggattgggcaataggccgcaccactttcttaaccttctttcttg 11053504  T
Q  346 ccgaagaaataacaccagcg 365  Q
    |||| |||||||||||||||    
T  11053503 ccgatgaaataacaccagcg 11053484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 11064166 - 11064036
Alignment:
Q  21 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 120  Q
    |||||||||| ||| || ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||  ||    
T  11064166 acatcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccg 11064067  T
Q  121 aagaaaccgccctaaccgcctttttaagacg 151  Q
    | |||||| || ||||| |||||||||||||    
T  11064066 aggaaaccaccttaaccacctttttaagacg 11064036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 17683905 - 17684166
Alignment:
Q  21 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 120  Q
    |||||||||| | | || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| ||    
T  17683905 acatcatcaaccgctactttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccg 17684004  T
Q  121 aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctggg 220  Q
    | |||||| || | ||| ||||||||||||| || |||||||||||||| ||||||||||||||||| || || | |||||||| ||| |||||||| ||    
T  17684005 aggaaaccacctttaccacctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctagg 17684104  T
Q  221 caaccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcc 282  Q
    |||| |||||||||| ||||||||||  ||||  ||||||||||  ||||||||||||||||    
T  17684105 caactgcgccacctttttcaaactaatcaccgagtgccgcaaaaccccattcactttcttcc 17684166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 36159902 - 36160061
Alignment:
Q  36 accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa 135  Q
    ||||||||||||||||||||  ||||  ||||||||||||| |||||||| || |  || || |||||   ||||||| ||| ||||||  || || | |    
T  36159902 accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca 36160001  T
Q  136 ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgca 195  Q
    |||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||||||||    
T  36160002 ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgca 36160061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 17684198 - 17684249
Alignment:
Q  314 aggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcg 365  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  17684198 aggccgcaccactttcctgaccttctttcttgccgatgaaataacaccagcg 17684249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 26741535 - 26741878
Alignment:
Q  21 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 120  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| ||    
T  26741535 acatcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccg 26741634  T
Q  121 aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctggg 220  Q
    |||||||| |||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| | ||| ||||  || ||||||| |||    
T  26741635 aagaaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcaggg 26741734  T
Q  221 caaccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctccttataactattgaactggatttagcaaaaggccgc 320  Q
    || |||  ||||||| ||||||||||  ||||| | ||| || ||  ||||||||||||||| | |  |||| |  | ||  |||| ||||| |||| ||    
T  26741735 cagccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgc 26741834  T
Q  321 accactttcttaaccttctttcttgccgaagaaataacaccagc 364  Q
     ||||| ||||||||||||| || ||||| ||||||||||||||    
T  26741835 gccactctcttaaccttcttcctagccgatgaaataacaccagc 26741878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 10560002 - 10559741
Alignment:
Q  23 atcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaa 122  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| ||||    
T  10560002 atcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaa 10559903  T
Q  123 gaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggca 222  Q
    |||||| || | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | ||||||||   | |||||||| ||||    
T  10559902 gaaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggca 10559803  T
Q  223 accgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctc 284  Q
     | || ||||||| ||||||||||  ||||  ||||||| ||  ||||||||||||||||||    
T  10559802 gctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctc 10559741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 10558490 - 10558434
Alignment:
Q  309 gcaaaaggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcg 365  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10558490 gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcg 10558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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