View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18173_high_11 (Length: 531)

Name: NF18173_high_11
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18173_high_11
NF18173_high_11
[»] chr4 (7 HSPs)
chr4 (1-165)||(32649321-32649485)
chr4 (165-276)||(32649169-32649281)
chr4 (254-323)||(32649095-32649164)
chr4 (321-365)||(32225581-32225625)
chr4 (324-363)||(23976706-23976745)
chr4 (326-364)||(44376078-44376116)
chr4 (323-364)||(17558824-17558865)
[»] chr2 (3 HSPs)
chr2 (194-363)||(22136279-22136449)
chr2 (449-514)||(32073783-32073855)
chr2 (363-419)||(32073854-32073910)
[»] chr5 (7 HSPs)
chr5 (309-365)||(16349713-16349769)
chr5 (309-363)||(4082574-4082628)
chr5 (326-364)||(30096275-30096313)
chr5 (305-363)||(16222687-16222745)
chr5 (321-363)||(40951482-40951524)
chr5 (326-363)||(25099236-25099273)
chr5 (326-363)||(25158326-25158363)
[»] chr8 (5 HSPs)
chr8 (311-365)||(16367864-16367918)
chr8 (311-363)||(42308123-42308175)
chr8 (326-364)||(405353-405391)
chr8 (319-365)||(771642-771688)
chr8 (335-363)||(17695634-17695662)
[»] chr1 (5 HSPs)
chr1 (326-366)||(28947451-28947491)
chr1 (311-369)||(27840301-27840359)
chr1 (321-363)||(51387129-51387171)
chr1 (311-368)||(47250304-47250361)
chr1 (319-363)||(50293655-50293699)
[»] chr7 (1 HSPs)
chr7 (326-365)||(31097904-31097943)
[»] scaffold0896 (1 HSPs)
scaffold0896 (326-363)||(1109-1146)
[»] chr6 (2 HSPs)
chr6 (326-363)||(8657064-8657101)
chr6 (326-363)||(33289070-33289107)
[»] chr3 (2 HSPs)
chr3 (318-363)||(53693213-53693258)
chr3 (319-363)||(44708227-44708271)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 32649485 - 32649321
Alignment:
Q  1 caataaagaacaaggagtagaactttctattataactaattagtttgatagcctgccaatcgttatccttatgcaattcctgatggttaatatcattgta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  32649485 caataaagaacaaggagtagaactttctactataactaattagtttgatagcctgccaattgttatccttatgcaattcctgatggttaatatctatgta 32649386  T
Q  101 tgcaggccattccgattataaagttgaggatgcatgttgttcatggtggttaaatttaatgtgtt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32649385 tgcaggccattccgattataaagttgaggatgcatgttgttcatggtggttaaatttaatgtgtt 32649321  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 165 - 276
Target Start/End: Complemental strand, 32649281 - 32649169
Alignment:
Q  165 tctaatgactaaatatactgtcacataagtttagtgaaacaacaaaacacactacgttacat-cgtatatcacgagaccacacataagtctgtaacaaca 263  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  32649281 tctaatgactaagtatactgtcacataagtttagtgacacaacaaaacacacaacgctacattcgtatatcacgagaccacacataagtttgtaacaaca 32649182  T
Q  264 gacatattctctg 276  Q
    |||||||||||||    
T  32649181 gacatattctctg 32649169  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 32649164 - 32649095
Alignment:
Q  254 tgtaacaacagacatattctctgtgaaaagttcattcatactaaaatatatttcaaataatgtcttaaac 323  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  32649164 tgtaacaacagacatattttctgcgaaaagttcattcatactacaatatatttcaagtaatgtcttaaac 32649095  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 32225625 - 32225581
Alignment:
Q  321 aactatatatgatacgtgcggcagcacgggtggacgatctagttt 365  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||    
T  32225625 aactatatatgacccgtgcggcagcaccggtggacgatctagttt 32225581  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 23976745 - 23976706
Alignment:
Q  324 tatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  23976745 tatatatgacccgtgcggcagcacgggtggacgatctagt 23976706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 44376116 - 44376078
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagtt 364  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  44376116 tatatgacccgtgcggcagcacgggtggacgatctagtt 44376078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 17558865 - 17558824
Alignment:
Q  323 ctatatatgatacgtgcggcagcacgggtggacgatctagtt 364  Q
    ||||||||||  ||||||||||||||||| ||||||||||||    
T  17558865 ctatatatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

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Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 194 - 363
Target Start/End: Complemental strand, 22136449 - 22136279
Alignment:
Q  194 tttagtgaaacaacaaaacacactacgttacatc----gtatatcacgagaccacacataagtctgtaacaacagacatattctctgtgaaaagttcatt 289  Q
    ||||||| |||| ||||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||   |    
T  22136449 tttagtggaacagcaaaacacactacgttacatttgtagtatatcacgagaccacacataagtttgtaacaacagacatattctctgcgacaagtt---t 22136353  T
Q  290 catactaaaatatatttcaaataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    ||||||| |||||||||| | ||||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  22136352 catactacaatatatttcgagtaatgtcttaaactatatatgacccgtgcggcaacacgggtggacgatctagt 22136279  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 514
Target Start/End: Complemental strand, 32073855 - 32073783
Alignment:
Q  449 gtaactagagaatgcttatagctacctaa-------ttatgggactggctatattgttcaaatatcttgaaat 514  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  32073855 gtaactagagaatgcttatagctacctaagtatgatttatgggactggctatattgttcaaatatcttgaaat 32073783  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 32073910 - 32073854
Alignment:
Q  363 tttatttattgcagactagcgacaatagtttgacactctttcatacctatcaaaagt 419  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  32073910 tttatttattgcagactagtgacaatagtttgtcgctctttcatacctatcaaaagt 32073854  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 16349769 - 16349713
Alignment:
Q  309 aataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagttt 365  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||||||||||    
T  16349769 aataatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagttt 16349713  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 4082574 - 4082628
Alignment:
Q  309 aataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||||||||    
T  4082574 aataatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagt 4082628  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 30096313 - 30096275
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagtt 364  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  30096313 tatatgatccgtgcggcagcacgggtggacgatctagtt 30096275  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 16222687 - 16222745
Alignment:
Q  305 ttcaaataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    ||||| |||||| || | |||||||||| | |||||||||||||||| |||||||||||    
T  16222687 ttcaactaatgtttttagctatatatgacatgtgcggcagcacgggtagacgatctagt 16222745  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 40951482 - 40951524
Alignment:
Q  321 aactatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  40951482 aactatatatgacccgtgcggcagcacgggtagacgatctagt 40951524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 25099273 - 25099236
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||||||  |||||||||||||||||||||||||||||    
T  25099273 tatatgacccgtgcggcagcacgggtggacgatctagt 25099236  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 25158363 - 25158326
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||||||  |||||||||||||||||||||||||||||    
T  25158363 tatatgacccgtgcggcagcacgggtggacgatctagt 25158326  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 311 - 365
Target Start/End: Original strand, 16367864 - 16367918
Alignment:
Q  311 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagttt 365  Q
    |||||| |||||||||||||||  ||||||||||||||||| |||||||||||||    
T  16367864 taatgttttaaactatatatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 42308175 - 42308123
Alignment:
Q  311 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||||| || ||||||||||||  ||||||||||||| |||||||||||||||    
T  42308175 taatgtttttaactatatatgacccgtgcggcagcacaggtggacgatctagt 42308123  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 405391 - 405353
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagtt 364  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  405391 tatatgacccgtgcggcagcacgggtggacgatctagtt 405353  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 771642 - 771688
Alignment:
Q  319 taaactatatatgatacgtgcggcagcacgggtggacgatctagttt 365  Q
    ||||||||||||||  ||||||||||||||||| ||||| |||||||    
T  771642 taaactatatatgacccgtgcggcagcacgggtagacgacctagttt 771688  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 363
Target Start/End: Original strand, 17695634 - 17695662
Alignment:
Q  335 cgtgcggcagcacgggtggacgatctagt 363  Q
    |||||||||||||||||||||||||||||    
T  17695634 cgtgcggcagcacgggtggacgatctagt 17695662  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 28947491 - 28947451
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagttta 366  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  28947491 tatatgacccgtgcggcagcacgggtggacgatctagttta 28947451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 27840359 - 27840301
Alignment:
Q  311 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagtttattt 369  Q
    |||||| |||||||||| ||||  |||||| |||||||||| |||||||||||| ||||    
T  27840359 taatgttttaaactataaatgacccgtgcgacagcacgggtagacgatctagttcattt 27840301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 51387171 - 51387129
Alignment:
Q  321 aactatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  51387171 aactatatatgacccgtgcggcagcacgggtagacgatctagt 51387129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 47250304 - 47250361
Alignment:
Q  311 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagtttatt 368  Q
    |||||| || ||||||||||||  ||||||||||| ||| ||||||||||||| ||||    
T  47250304 taatgtttttaactatatatgacccgtgcggcagctcggatggacgatctagtatatt 47250361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 50293655 - 50293699
Alignment:
Q  319 taaactatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    ||||||||||||||  |||||||||||| |||| |||||||||||    
T  50293655 taaactatatatgacccgtgcggcagcatgggtagacgatctagt 50293699  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 31097904 - 31097943
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagttt 365  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  31097904 tatatgacccgtgcggcagcacgggtggacgatctagttt 31097943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 1109 - 1146
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||||||  |||||||||||||||||||||||||||||    
T  1109 tatatgacccgtgcggcagcacgggtggacgatctagt 1146  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 8657101 - 8657064
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||||||  |||||||||||||||||||||||||||||    
T  8657101 tatatgacccgtgcggcagcacgggtggacgatctagt 8657064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 33289107 - 33289070
Alignment:
Q  326 tatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||||||  |||||||||||||||||||||||||||||    
T  33289107 tatatgacccgtgcggcagcacgggtggacgatctagt 33289070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 53693213 - 53693258
Alignment:
Q  318 ttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||||||||||||||   |||||||||||||||| |||||||||||    
T  53693213 ttaaactatatatgacctgtgcggcagcacgggtagacgatctagt 53693258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 44708271 - 44708227
Alignment:
Q  319 taaactatatatgatacgtgcggcagcacgggtggacgatctagt 363  Q
    |||| |||||||||  ||||||||||||||||| |||||||||||    
T  44708271 taaattatatatgacccgtgcggcagcacgggtagacgatctagt 44708227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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