View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_14 (Length: 475)
Name: NF18173_high_14
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 8557128 - 8556707
Alignment:
| Q |
1 |
ataggcatgattttcttgggtgagaaatgagacgtaagggaaagtatgagaaaaacggttcaaaaatagaatgcacatactcacaaacaagcctccaatg |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8557128 |
ataggcattattttcttgggtgagaaatgagacgtaaggggaagtatgagaaaaacggttcaaaaatagaatgca-atactcacaaacaagcctccaatg |
8557030 |
T |
|
| Q |
101 |
tcatgagtcatgtgcctattcaaattcaaaagaaggacaaatgagatgagaatgagttttgctaatcaaagatttattgtgatagctccaatccacagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8557029 |
tcatgagtcatgtgcctattcaaattcaaaagaaggataaatgagatgagaatgagttttgctaatcaaagatttattgtgatagctccaatccacagtt |
8556930 |
T |
|
| Q |
201 |
gacacgtgttaatggaaggactaatttgagacctgttaattcctcggttgctaattataaatattataattactatttcatctattttagaataagtgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| | |||||||||| |
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|
| T |
8556929 |
gacacgtgttaatggaaggactaatttgagacctgttaattccttggttgctaattataaatattattattattatttcatctatttcaaaataagtgtt |
8556830 |
T |
|
| Q |
301 |
acttggacattcagtc-ggtctgggaccaaaacctcgacctaaactaaacatcagatgctatcacacaaggtcgaaattcgaccgctttacaaaatcaat |
399 |
Q |
| |
|
||||||| ||| |||| ||| | | |||||||||| |||||||| |||| | ||||||| || |||||| || |||| | ||||||||||||| | |
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| T |
8556829 |
acttggagattaagtcgggtgcgagcccaaaacctc-acctaaaccaaaccgcggatgcta--gcataaggtccaatttcgtcgtctttacaaaatcagt |
8556733 |
T |
|
| Q |
400 |
ttaataatctagtggtctgtctggca |
425 |
Q |
| |
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||||||||| |||||| ||| ||||| |
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| T |
8556732 |
ttaataatcaagtggtttgtatggca |
8556707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 8555604 - 8555898
Alignment:
| Q |
1 |
ataggcatgattttcttgggtgagaaatgagacgtaagggaaagtatgagaaaaacggttcaaaaatagaatgcacatactcacaaacaagcctccaatg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||| |
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| T |
8555604 |
ataggcatgatattcttgggtgagaaatgagacgtaaggggaagtatgagaaaaacggttcaaaat--gaagg---------acaaacaagcctccaatg |
8555692 |
T |
|
| Q |
101 |
tcatgagtcatgtgcctattcaaattcaaaagaaggacaaatgagatgagaatgagttttgctaatcaaagatttattgtgatagctccaatccacagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8555693 |
tcatgagtcatgtgcctattcaaattcaaatgaaggacaaatgagatgagaatgagttttgctaatcaaagggttattgtgatagctccaatccacagtg |
8555792 |
T |
|
| Q |
201 |
gacacgtgttaatggaaggactaatttgagacctgttaattcctcggttgctaattataaatattataattactatttcatctattttagaataagtgtt |
300 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| || |||| |||||||||||||||| ||||||||| |
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|
| T |
8555793 |
gacacgtgttaatggaaggac---------accccttaattcctcgattgataattataaatgtt---attattatttcatctattttaaaataagtgta |
8555880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8611913 - 8611709
Alignment:
| Q |
1 |
ataggcatgattttcttgggtgagaaatgagacgtaagggaaagtatgagaaaaacggttcaaaaatagaatgcacatactcacaaacaagcctccaatg |
100 |
Q |
| |
|
||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||||| | || ||| ||| |
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| T |
8611913 |
ataggcatgattttcttgggtaataagtgagacgtgagggaaagtatgagaaaaacggttcaaaaatagaatgtaactattca--------------atg |
8611828 |
T |
|
| Q |
101 |
tcatgagtcatgtgcctattcaaattcaaaagaaggacaaatgagatgagaatgagttttgctaatcaaagatttattgtgatagctccaatccacagtt |
200 |
Q |
| |
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| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| | |
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|
| T |
8611827 |
ttatgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgctaatcaaaggtttactatgatagctccaatccacaatg |
8611728 |
T |
|
| Q |
201 |
gacacgtgttaatggaagg |
219 |
Q |
| |
|
||||||||| ||||||||| |
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|
| T |
8611727 |
gacacgtgtcaatggaagg |
8611709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 8567117 - 8567316
Alignment:
| Q |
1 |
ataggcatgattttcttgggtgagaaatgagacgtaagggaaagtatgagaaaaacggttcaaaaatagaatgcacatactcacaaacaagcctccaatg |
100 |
Q |
| |
|
||||||||||||||||| ||| | | ||||| || ||||||||||| |||||||||||||||||||||||| |||||||| |||||||| ||||||| |
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|
| T |
8567117 |
ataggcatgattttctttggtaatatatgagt-gtgagggaaagtataagaaaaacggttcaaaaatagaatttgcatactcataaacaagcatccaatg |
8567215 |
T |
|
| Q |
101 |
tcatgagtcat----gtgcctattcaaattcaaaagaaggacaaatgagatgagaatgagttttgctaatcaaagatttattgtgatagctccaatccac |
196 |
Q |
| |
|
||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||| |
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|
| T |
8567216 |
tcatgagtcatacatgtgcctaatgaaattaaaaagaaggacaaatgagatgagaatgagttttcctaatcaaagggttattgtgatagcttcagtccac |
8567315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 8646737 - 8646919
Alignment:
| Q |
1 |
ataggcatgattttcttgggtgagaaatgagacgtaagggaaagtatgagaaaaacggttcaaaaatagaatgcacatactcacaaacaagcctccaatg |
100 |
Q |
| |
|
||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||||| | || ||| ||| |
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|
| T |
8646737 |
ataggcatgattttcttgggtaataagtgagacgtgagggaaagtatgagaaaaacggttcaaaaatagaatgtatctattca--------------atg |
8646822 |
T |
|
| Q |
101 |
tcatgagtcatgtgcctattcaaattcaaaagaaggacaaatgagatgagaatgagttttgctaatcaaagatttattgtgatagctccaatccaca |
197 |
Q |
| |
|
| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |
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|
| T |
8646823 |
ttatgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatccaca |
8646919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8594511 - 8594583
Alignment:
| Q |
1 |
ataggcatgattttcttgggtgagaaatgagacgtaagggaaagtatgagaaaaacggttcaaaaatagaatg |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8594511 |
ataggcatgattttcttgggtgagaaatgagacgtaagggaaagtatgagaaaaacggttcaaaaatagaatg |
8594583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 425
Target Start/End: Original strand, 8594586 - 8594741
Alignment:
| Q |
269 |
attactatttcatctattttagaataagtgttacttggacattcagtc-ggtctgggaccaaaacctcgacctaaactaaacatcagatgctatcacaca |
367 |
Q |
| |
|
|||| |||||||||||||| | ||||||||| |||||||||||||||| ||| || | |||||||| ||||||||||||||| |||||||| | |||| |
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|
| T |
8594586 |
attattatttcatctatttcaaaataagtgtaacttggacattcagtcgggtgtgaggccaaaaccacgacctaaactaaaccgcagatgctgt--caca |
8594683 |
T |
|
| Q |
368 |
aggtcgaaattcgaccgctttacaaaatcaatttaataatctagtggtctgtctggca |
425 |
Q |
| |
|
||||| | || |||||||||||||||| ||| ||||||| ||||| ||| ||||| |
|
|
| T |
8594684 |
aggtccgattttatccgctttacaaaatcagtttgataatctggtggtttgtatggca |
8594741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 8588867 - 8588988
Alignment:
| Q |
53 |
aaacggttcaaaaatagaatg--cac-atactcacaaacaagcctccaatgtcatgagtcatgtgcctattcaaattcaaaagaaggacaaatgagatga |
149 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||| ||| ||||||||| |
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|
| T |
8588867 |
aaacggctcaaaaatagaatgtgcaccatactcacaaacaagaatccaatgccatgctccatgtgctaattcaaattcaaaagaagaacatatgagatga |
8588966 |
T |
|
| Q |
150 |
gaatgagttttgctaatcaaag |
171 |
Q |
| |
|
| |||||||||| |||| |||| |
|
|
| T |
8588967 |
ggatgagttttggtaataaaag |
8588988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 8632868 - 8632946
Alignment:
| Q |
47 |
tgagaaaaacggttcaaaaatagaatgcacatactcacaaacaagcctccaatgtcatgagtcatgtgcctattcaaat |
125 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| |||| |
|
|
| T |
8632868 |
tgagaaaaacggttcagaagtagaatgtacatactcacaaacaagcatccaatgccatgaccgatgtgcctattgaaat |
8632946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 8569538 - 8569596
Alignment:
| Q |
76 |
catactcacaaacaagcctccaatgtcatgagtcatgtgcctattcaaattcaaaagaa |
134 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
8569538 |
catactcacaaacaagcatccaatgccatgttccatgtgctaattcaaattcaaaagaa |
8569596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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