View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_15 (Length: 472)
Name: NF18173_high_15
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 12 - 464
Target Start/End: Original strand, 30848050 - 30848502
Alignment:
| Q |
12 |
cactactatgctcccaataacatgacgataagtaacaaagacatgagggtccattccattattaaatgaagcctctactaggaaatattgaagcacaaga |
111 |
Q |
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| T |
30848050 |
cactactatgcccccaatagcatgacgataagtaacaaagacatgagggtccattccattattaaatgaagcctctactaggaaatattgaagcacaaga |
30848149 |
T |
|
| Q |
112 |
gccacctgaacaagaaccataaaaaggtgaggcttaaatttctcatacaccacccaaaatgtttgttcattattagtcatagctttaaaattttgtgctt |
211 |
Q |
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| T |
30848150 |
gccacctgaacaagaaccataaaaaggtgaggcttaaatttctcatacaccacccaaaatgtttgttcattgttagtcatagctttaaaattttgtgctt |
30848249 |
T |
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| Q |
212 |
aacttaagttctccttgattatatttgtgtgtagaagttatagacttgtttatttatatatacatgcatgcttgcatcaaattcctaatggaaactgatt |
311 |
Q |
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| T |
30848250 |
aacttaagttctccttgattatatttgtgtgtagaagttatagacttatttatttatatatacatgcatgcttgcatcaaattcctaatggaaactgatt |
30848349 |
T |
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| Q |
312 |
tgaaaggtgaaaactaatttgattaaatggtctatcaaagaattgaaagtaattcttcgacaatatattatcatcatagaatattgacagcttcattaca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30848350 |
tgaaaggtgaaaactaatttgattaaatggtctatcaaagaattgaaagtaattcttcgacaatatattatcatcatagaatattgacagcttcattaca |
30848449 |
T |
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| Q |
412 |
cacctatatcttattaacttttatctcctagacttgaaggaatacagaataat |
464 |
Q |
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| T |
30848450 |
cacctatatcttattaacttttatctcctagacttgaaggaatacagaataat |
30848502 |
T |
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