View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_18 (Length: 438)
Name: NF18173_high_18
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 47568142 - 47567734
Alignment:
| Q |
11 |
acatcatcttgcaagaacatatgtctatttaacttaagagttgaactgtaattacagtaaaaagtactaaccaagtaaaaagtaatccagactcttgtcc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47568142 |
acatcatcttgcaagaacatatgtctatttaacttaagagttgaactgtaattacagtaaaaagtactaaccaagtaaaaagtaatccagactcttgtcc |
47568043 |
T |
|
| Q |
111 |
atgaagacaaaatccttgtcatttcactagatttacgtgctgaagtcaagctataacaagaacctcattattcaattcttttgcaccttgcttggagctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47568042 |
atgaagacaaaatccttgtcatttcactagatttacgtgctgaagtcaagctataacaagaacctcattattcaattcttttgcaccttgcttggagctt |
47567943 |
T |
|
| Q |
211 |
cccaaatgcctcttcatctcatcccaattggtatgtacaccctgtaaagtaagatgaaccattagttaattcactactcatgccaatcttaaatataagc |
310 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47567942 |
cccaaaagcctcttcatctcatcccaattggtatgtacaccctgtaaagtaagatgaaccattagttaattcactactcatgccaatcttaaatataagc |
47567843 |
T |
|
| Q |
311 |
aaaaagtcaaatgtatttgattcaaacgtttttaaatatacgtaaaaacgaaaactgtgcttggtccaatttggacgtggcacatgaagaggccaaagat |
410 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47567842 |
aaaaagtcaaatgtatttgattcaaacgtttttaaatatacgtaaaaacgaaaactgtgcttggtccaatttggacttggcacatgaagaggccaaagat |
47567743 |
T |
|
| Q |
411 |
agtgttgtt |
419 |
Q |
| |
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||||||||| |
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| T |
47567742 |
agtgttgtt |
47567734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 40179921 - 40179887
Alignment:
| Q |
297 |
tcttaaatataagcaaaaagtcaaatgtatttgat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
40179921 |
tcttaaatataagcaaaaagtcaaatgtatttgat |
40179887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 27542729 - 27542693
Alignment:
| Q |
295 |
aatcttaaatataagcaaaaagtcaaatgtatttgat |
331 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
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|
| T |
27542729 |
aatcttaaatataaataaaaagtcaaatgtatttgat |
27542693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 4931643 - 4931603
Alignment:
| Q |
296 |
atcttaaatataagcaaaaagtcaaatgtatttgattcaaa |
336 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4931643 |
atcttaaatataaacaaaaagtcaaatgtatttgattcaaa |
4931603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 16850716 - 16850678
Alignment:
| Q |
297 |
tcttaaatataagcaaaaagtcaaatgtatttgattcaa |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
16850716 |
tcttaaatataagcaaaaagtcaaatgtatttggttcaa |
16850678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 1048167 - 1048206
Alignment:
| Q |
297 |
tcttaaatataagcaaaaagtcaaatgtatttgattcaaa |
336 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |
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|
| T |
1048167 |
tcttaaatataagcaaaaagtcaattgcatttgattcaaa |
1048206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 29037065 - 29037102
Alignment:
| Q |
297 |
tcttaaatataagcaaaaagtcaaatgtatttgattca |
334 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| |
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|
| T |
29037065 |
tcttaagtataagcaaaaagtcaaatgtatttggttca |
29037102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 32910693 - 32910657
Alignment:
| Q |
296 |
atcttaaatataagcaaaaagtcaaatgtatttgatt |
332 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |
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| T |
32910693 |
atcttaaatataatcaaaaagtcaaatatatttgatt |
32910657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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