View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_19 (Length: 434)
Name: NF18173_high_19
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Original strand, 13580721 - 13581128
Alignment:
| Q |
16 |
attactatctcattggtgtattaatcttacacctaattttgtcactaatctagattatatccaccaatatcaatgactaatctcaaccaagttagacaca |
115 |
Q |
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| T |
13580721 |
attactatctcattggtgtattaatcttacacctaattttgtcactaatctagattatatccaccaatatcaatgactaatctcaaccaagttagacaca |
13580820 |
T |
|
| Q |
116 |
agatttccttatactaaggtcaactcacaatagcatatcatatacattaataacatttatctgtcaattatagcctagcatagtcggtattaatgtacat |
215 |
Q |
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| T |
13580821 |
agatttccttatactaaggtcaactcacaatagcatatcatatacattaataacatttatctgtcaattatatcctagcatagtcggtattaatgtacat |
13580920 |
T |
|
| Q |
216 |
atgttgtgttattatgtacaaatcatcacaaaagaaatacaaatacaaattattttatcttggcatcagagcatcattactaaaaggttaatgatccaaa |
315 |
Q |
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| T |
13580921 |
atgttgtgttattatgtacaaatcatcacaaaagaaatacaaatacaaattattttatcttggcatcagagcatcattactaaaaggttaatgatccaaa |
13581020 |
T |
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| Q |
316 |
taaaattatggcatccgctgcaagtgcaagtaacaaaaatgatcttccatcaactattcctgtcaagctagatagagataattatctcttatggaaatcc |
415 |
Q |
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| T |
13581021 |
taaaattatggcatccgctgcaagtgcaagtaacaaaaatgatcttccatcaactattcctgtcaagctagatagagataattatctcttatggaaatcc |
13581120 |
T |
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| Q |
416 |
ttagtatt |
423 |
Q |
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| T |
13581121 |
ttagtatt |
13581128 |
T |
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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 1422001 - 1422087
Alignment:
| Q |
126 |
atactaaggtcaactcacaatagcatatcatatacattaataacatttatctgtcaattatagcctagcatagtcggtattaatgta |
212 |
Q |
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|||||| |||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||||||||||| | | |||||||||| |
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| T |
1422001 |
atactagggtcaactcattataacatatcatataccataataacatttatctgttaattatagcctagcataattgttattaatgta |
1422087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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