View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_23 (Length: 414)
Name: NF18173_high_23
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 8319542 - 8319872
Alignment:
| Q |
19 |
ccattgtcaatttcattctttaatttcattatggtccatgattaattaataaactgagtcatgctgttatacacattatcgaccattattaattcacatt |
118 |
Q |
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| T |
8319542 |
ccattgtcaatttcattctttaatttcattatggtccatgattaattaataaactgagtcatgctgttatacacattatcgaccattattaattcacatt |
8319641 |
T |
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| Q |
119 |
atcaaccattctacactgtaaaaatctactgctaatgcttcctcccttcaatcaccttttattgtttagatgagaaatattttcacacctttgtttcttt |
218 |
Q |
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| T |
8319642 |
atcaaccattctacactgtaaaaatctactgctaatgcttcctcccttcaatcaccttttattgtttagatgagaaatgttttcccacctttgtttgttt |
8319741 |
T |
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| Q |
219 |
gtatttccaaaggtgcggaaaacagttctcatccnnnnnnntaaaagatcaaaatccaaaggtgtttgtgtttctcacagcttttgattttgttgaactg |
318 |
Q |
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| T |
8319742 |
gtatttccaaaggtgcggaaaacagttctcatccaaaaaaataaaagatcaaaatccaaaggtgtttgtgtttctcacagcttttgattttgttgaactg |
8319841 |
T |
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| Q |
319 |
atgattgtgtgttgccaaactctacctaccc |
349 |
Q |
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| T |
8319842 |
atgattgtgtgttgccaaactctacctaccc |
8319872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 141 - 398
Target Start/End: Original strand, 8329485 - 8329733
Alignment:
| Q |
141 |
aatctactgctaatgcttcctcccttcaatcaccttttattgtttagatgagaaatattttcacacctttgtttctttgtatttccaaaggtgcggaaaa |
240 |
Q |
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| T |
8329485 |
aatctactgctaatgctccctccattcaatcaccttttattgtttagatgagaaatgttttcccacctttgtttgtttttatagccaaaggtgcggaaaa |
8329584 |
T |
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| Q |
241 |
cagttctcatcc-nnnnnnntaaaagatcaaaatccaaaggtgtttgtgtttctcacagcttttgattttgttgaactgatgattgtgtgttgccaaact |
339 |
Q |
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| T |
8329585 |
cagttctcatccaaaaaaaataaaagatcaaaatccaaaggtgtttgtattttcctcagcttttgattttgttgaactgatgattgtgtgttgcca---- |
8329680 |
T |
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| Q |
340 |
ctacctacccttcctcagctttttataaagttcaactataaaagattatacggtagata |
398 |
Q |
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| T |
8329681 |
------acccttcctcagctttttataaagttcaactataaaagattgtacagtagata |
8329733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 8325388 - 8325442
Alignment:
| Q |
345 |
tacccttcctcagctttttataaagttcaactataaaagattatacggtagatat |
399 |
Q |
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| T |
8325388 |
tacccttcctcagctttttataaagttcaactataaaagattatacggtagatat |
8325442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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