View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18173_high_26 (Length: 374)
Name: NF18173_high_26
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 24591371 - 24591729
Alignment:
| Q |
1 |
acttcaataacaccttgtataaatcttgttgaataagctccaatatgtatcatatgaagcgcaagtatatcagaatatcctaagagggactaacatgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
24591371 |
acttcaataacaccttgtataaatcttgttgaattagctccaatatgtatcatatgaagcacaagtatatcagaatctcctaagagggacttacatgaag |
24591470 |
T |
|
| Q |
101 |
aggcagagagagtaatgcagccaaggatgacttgccgacaacattggcgaatgttcatgtgatttctgcctcgttgtgccggcaagttgtccttggctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24591471 |
aggcagagagagtaatgcagccaaggatgacttgccgacaacattggcgaatgttcatgtgatttctgcctcattgtgccggcaagttgtccttggctat |
24591570 |
T |
|
| Q |
201 |
gttaatctctcatcttctcatgtcagtacctcattttaggtcagtcgtggttttaaattatgttctcctactacaatattactaatttttaaggtctcta |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24591571 |
gttagtctctcatcttctcatgtcagtacctcattttaggtcagtcgtggttttaaattatgttctccaactacaatattactaatttttaaggtctcta |
24591670 |
T |
|
| Q |
301 |
taacgacgtcataaccatgaatttcgccattttgcctcgtttttctccaatataaatgt |
359 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24591671 |
taacgacatcacaaccacgaatttcgccattttgcctcgtttttctccaatataaatgt |
24591729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 34472287 - 34472345
Alignment:
| Q |
79 |
cctaagagggactaacatgaagaggcagagagagtaatgcagccaaggatgacttgccg |
137 |
Q |
| |
|
||||||||| || |||||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
34472287 |
cctaagaggagcttacatgaagaggcagagagtgtagtacagccaaggatgacttgccg |
34472345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University