View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_31 (Length: 357)
Name: NF18173_high_31
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 12842897 - 12842571
Alignment:
| Q |
20 |
ctcagcattgaagacagctctactgaatgaaagacagaactctatttcttcccatcttcgagttgagaaatacaaagaaacaaggcatgagttggataaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
12842897 |
ctcagcattgaagacagctctactgaatgaaagatagaactctatttcttcccatcttcgagttgcgaaatacaaagtaacaaggcatgagttggataaa |
12842798 |
T |
|
| Q |
120 |
aaacttgacactcaacatcagcgccaaatgtaagacagcattgtctcgtcctgcccctctgtcttttcttttcaaggcaacatgattccttcattcgaca |
219 |
Q |
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||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12842797 |
aaattcgacactcaatatcagcgccaaatgtaagactgcattgtctcgtcctgcccctttgtcttttcttttcaaggcaacatgattccttcattcgaca |
12842698 |
T |
|
| Q |
220 |
acatgttcatctcgttagatttaaagtaagcattgactatgaattgcaggttcctctagaactgtctatgttgttaatgtgctttgtgaaaggttcaaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12842697 |
acatgttcatctcgttagatttaaagtaagcattgactatgaattgcaggctcctctagaactgtctatgttgttaatgtgcttcgtgaaaggttcaaat |
12842598 |
T |
|
| Q |
320 |
aatgggttattctgcatgactgttctt |
346 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
12842597 |
aatgggttattctgcatgactgttctt |
12842571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 39174065 - 39174385
Alignment:
| Q |
20 |
ctcagcattgaagacagctctactgaatgaaagacagaactctatttcttcccatcttcgagttgagaaatacaaagaaacaaggcatgagttggataaa |
119 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| |||||| |||||||| |||||||||||| |
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| T |
39174065 |
ctcagcattggagatagctctactgaatgaaagtcagaactctatttcatcccttcttcgagttgagaaattcaaagacacaaggcaggagttggataaa |
39174164 |
T |
|
| Q |
120 |
aaacttgacactcaacatcagcgccaaatgtaagacagcattgtctcgtcctgcccctctgtcttttcttttcaaggcaacatgattccttcattcgaca |
219 |
Q |
| |
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|| |||| |||||| |||||||||||||||||||| |||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||| ||| |
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| T |
39174165 |
aagtttgatactcaatatcagcgccaaatgtaagactccattgtcttgtcctgctcctttatcttttcttttcaaggcaacatgattccttcattctaca |
39174264 |
T |
|
| Q |
220 |
acatgttcatctcgtta-gatttaaagtaagcattgactatgaattgcaggttcctctagaactgtctatgttgttaatgtgctttgtgaaaggttcaaa |
318 |
Q |
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|| | || |||| || | | || ||||||||||||||||||||||| |||| |||| || || |||||| || |||||||||||| ||| ||||||||| |
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| T |
39174265 |
acttatttatcttgtcaggcttaaaagtaagcattgactatgaattacaggctcctataaaattgtctacattcttaatgtgctttatgagaggttcaaa |
39174364 |
T |
|
| Q |
319 |
taatgggttattctgcatgac |
339 |
Q |
| |
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||||||||| || |||||||| |
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| T |
39174365 |
taatgggtttttttgcatgac |
39174385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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