View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18173_high_33 (Length: 343)

Name: NF18173_high_33
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18173_high_33
NF18173_high_33
[»] chr2 (23 HSPs)
chr2 (1-251)||(29628551-29628799)
chr2 (213-343)||(29628855-29628985)
chr2 (216-273)||(29629192-29629249)
chr2 (1-53)||(28039336-28039388)
chr2 (74-129)||(30331835-30331890)
chr2 (1-129)||(36534782-36534907)
chr2 (5-54)||(7928302-7928351)
chr2 (76-129)||(21828048-21828101)
chr2 (4-52)||(29316780-29316828)
chr2 (1-53)||(35379020-35379072)
chr2 (1-52)||(42420011-42420062)
chr2 (91-129)||(3312178-3312216)
chr2 (91-129)||(18179050-18179088)
chr2 (91-129)||(42659142-42659180)
chr2 (2-48)||(43456716-43456762)
chr2 (1-54)||(750684-750737)
chr2 (6-51)||(3235390-3235435)
chr2 (76-129)||(15305760-15305813)
chr2 (91-128)||(15757590-15757627)
chr2 (1-54)||(40279281-40279334)
chr2 (1-54)||(40279351-40279404)
chr2 (3-52)||(41809250-41809299)
chr2 (1-49)||(15977999-15978047)
[»] chr1 (27 HSPs)
chr1 (1-54)||(6102168-6102221)
chr1 (74-139)||(2295180-2295245)
chr1 (1-52)||(14629971-14630022)
chr1 (74-129)||(33204325-33204380)
chr1 (1-52)||(17778971-17779022)
chr1 (1-60)||(45975704-45975763)
chr1 (1-47)||(12564509-12564555)
chr1 (4-54)||(38503468-38503518)
chr1 (7-48)||(4768838-4768879)
chr1 (1-54)||(27820340-27820393)
chr1 (1-54)||(51695498-51695551)
chr1 (74-129)||(1432599-1432654)
chr1 (1-48)||(28689461-28689508)
chr1 (74-129)||(29904835-29904890)
chr1 (74-129)||(38001679-38001734)
chr1 (74-129)||(50644186-50644241)
chr1 (3-41)||(1232921-1232959)
chr1 (91-129)||(14385724-14385762)
chr1 (91-129)||(38116008-38116046)
chr1 (1-50)||(7137005-7137054)
chr1 (1-50)||(34290250-34290299)
chr1 (15-48)||(35669000-35669033)
chr1 (91-123)||(1684036-1684068)
chr1 (74-130)||(10233578-10233634)
chr1 (20-52)||(32859951-32859983)
chr1 (93-133)||(42575396-42575436)
chr1 (3-51)||(47885039-47885087)
[»] chr5 (20 HSPs)
chr5 (74-134)||(12425657-12425717)
chr5 (74-135)||(15015927-15015988)
chr5 (1-53)||(7984983-7985035)
chr5 (74-129)||(16937814-16937869)
chr5 (76-129)||(32372698-32372751)
chr5 (76-129)||(34736458-34736511)
chr5 (1-41)||(36318788-36318828)
chr5 (2-42)||(36326026-36326066)
chr5 (1-52)||(4014429-4014480)
chr5 (1-52)||(28413289-28413340)
chr5 (8-50)||(8334592-8334634)
chr5 (91-129)||(11700263-11700301)
chr5 (91-129)||(22209755-22209793)
chr5 (91-129)||(35445775-35445813)
chr5 (1-54)||(7319011-7319064)
chr5 (7-52)||(34160751-34160796)
chr5 (12-48)||(1899179-1899215)
chr5 (75-127)||(6096632-6096684)
chr5 (1-41)||(7674662-7674702)
chr5 (20-48)||(19138726-19138754)
[»] chr8 (17 HSPs)
chr8 (1-54)||(3536948-3537001)
chr8 (74-129)||(38602411-38602466)
chr8 (91-129)||(9130250-9130288)
chr8 (75-129)||(30251385-30251439)
chr8 (75-129)||(36963285-36963339)
chr8 (76-129)||(1058008-1058061)
chr8 (91-127)||(29818877-29818913)
chr8 (1-41)||(43504765-43504805)
chr8 (1-48)||(28769348-28769395)
chr8 (1-52)||(42215087-42215138)
chr8 (74-129)||(43717865-43717920)
chr8 (1-52)||(44401575-44401626)
chr8 (74-128)||(26771349-26771403)
chr8 (91-129)||(35534544-35534582)
chr8 (1-54)||(9956817-9956870)
chr8 (91-128)||(12497004-12497041)
chr8 (74-134)||(12976296-12976356)
[»] chr4 (19 HSPs)
chr4 (1-129)||(52315128-52315253)
chr4 (74-129)||(27043761-27043816)
chr4 (91-129)||(54426144-54426182)
chr4 (6-50)||(1312860-1312904)
chr4 (20-52)||(24929526-24929558)
chr4 (91-139)||(39691070-39691118)
chr4 (1-52)||(7694015-7694066)
chr4 (74-129)||(13126507-13126562)
chr4 (1-52)||(35064869-35064920)
chr4 (91-129)||(15173234-15173272)
chr4 (91-129)||(17822796-17822834)
chr4 (74-128)||(21731588-21731642)
chr4 (75-129)||(41336845-41336899)
chr4 (2-52)||(43824298-43824348)
chr4 (76-129)||(35571562-35571615)
chr4 (74-126)||(8705025-8705077)
chr4 (1-41)||(14011248-14011288)
chr4 (2-54)||(49202660-49202712)
chr4 (1-41)||(51630125-51630165)
[»] chr3 (22 HSPs)
chr3 (74-128)||(18405763-18405817)
chr3 (74-129)||(31365119-31365174)
chr3 (1-129)||(21367681-21367806)
chr3 (1-52)||(23808069-23808120)
chr3 (90-129)||(24684753-24684792)
chr3 (78-129)||(25447176-25447227)
chr3 (1-52)||(33883755-33883806)
chr3 (1-48)||(37273148-37273195)
chr3 (1-52)||(39602215-39602266)
chr3 (91-125)||(3845498-3845532)
chr3 (91-129)||(5448545-5448583)
chr3 (1-47)||(23793598-23793644)
chr3 (91-129)||(24085269-24085307)
chr3 (97-139)||(38902172-38902214)
chr3 (1-47)||(41671324-41671370)
chr3 (1-54)||(2719482-2719535)
chr3 (76-129)||(5436158-5436211)
chr3 (96-129)||(34610737-34610770)
chr3 (1-54)||(35394501-35394554)
chr3 (1-38)||(44747427-44747464)
chr3 (20-52)||(45432944-45432976)
chr3 (20-52)||(45555009-45555041)
[»] chr7 (14 HSPs)
chr7 (74-133)||(18765368-18765427)
chr7 (92-139)||(19302484-19302531)
chr7 (1-129)||(33678794-33678919)
chr7 (2-44)||(28128408-28128450)
chr7 (1-48)||(39280983-39281030)
chr7 (91-129)||(22283577-22283615)
chr7 (91-129)||(27863656-27863694)
chr7 (2-48)||(33894642-33894688)
chr7 (76-129)||(5947327-5947380)
chr7 (3-52)||(25130094-25130143)
chr7 (91-128)||(33601342-33601379)
chr7 (74-139)||(34036001-34036066)
chr7 (77-126)||(34744115-34744164)
chr7 (147-183)||(5569546-5569582)
[»] chr6 (10 HSPs)
chr6 (74-133)||(848073-848131)
chr6 (1-48)||(34939758-34939805)
chr6 (4-52)||(17241257-17241305)
chr6 (95-133)||(835188-835226)
chr6 (2-52)||(4420658-4420708)
chr6 (91-129)||(35069543-35069581)
chr6 (92-129)||(21405085-21405122)
chr6 (1-41)||(835265-835305)
chr6 (76-128)||(2455074-2455126)
chr6 (20-52)||(6536980-6537012)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 29628799 - 29628551
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaattttataagatgnnnnnnnnataagttcttccagactgtctcacaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  29628799 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaattttataagat--tttttttataagttcttccagactgtctcacaaa 29628702  T
Q  101 acttatgacagtagataagctcaaataaggcaaatcaaaaaggatatttgatttgagaaatggacgaaggagacaatgtgaacttatgttgttatgtatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29628701 acttatgacagtagataagctcaaataaggcaaatcaaaaaggatatttgatttgagaaatggacgaaggagacaatgtgaacttatgttgttatgtatc 29628602  T
Q  201 taatgcattttctttatggtttggctgtcttttgagggatctttggaagta 251  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  29628601 taatgcattttctttatggtttggctgtcttttgagtgatccttggaagta 29628551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 213 - 343
Target Start/End: Complemental strand, 29628985 - 29628855
Alignment:
Q  213 tttatggtttggctgtcttttgagggatctttggaagtactgatgtatcatgttttgctttagaattagttgcaacttatcgcacaattgtggtgcttct 312  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||| |    
T  29628985 tttatggtttggctgtcttttgagtgatctttggaagtattgatgtatcctgttttgctttagaattatttgcaacttatagcacaagtgtggtgcttat 29628886  T
Q  313 catgatcagtacttatataaaagttatttct 343  Q
    |||||| ||||||||||||||||||||||||    
T  29628885 catgataagtacttatataaaagttatttct 29628855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 29629249 - 29629192
Alignment:
Q  216 atggtttggctgtcttttgagggatctttggaagtactgatgtatcatgttttgcttt 273  Q
    ||||||||||| ||||||||  |||||||||||||| ||||||||| |||||||||||    
T  29629249 atggtttggctctcttttgattgatctttggaagtattgatgtatcctgttttgcttt 29629192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28039388 - 28039336
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaa 53  Q
    ||||||| |||||||||| ||||||||||||||||||||||  ||||||||||    
T  28039388 ataagctttcttggaaaagttatggaaataagctgaaaacagcttatgaacaa 28039336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 30331835 - 30331890
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||| ||| || ||||||||||||||||| ||||||||||||| |||||||    
T  30331835 ataagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataag 30331890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 36534782 - 36534907
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaattttataagatgnnnnnnnnataagttcttccagactgtctcacaaa 100  Q
    ||||||||| | ||| |||| ||| |||||||||||||| |  ||||||||||||||||||| ||        ||||||| | ||| || ||||||||||    
T  36534782 ataagctatataggagaattaatgaaaataagctgaaaatagattatgaacaattttataagctg---ttttcataagttatcccaaacagtctcacaaa 36534878  T
Q  101 acttatgacagtagataagctcaaataag 129  Q
    |||||||| || | |||||||||||||||    
T  36534879 acttatgaaagcatataagctcaaataag 36534907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 7928351 - 7928302
Alignment:
Q  5 gctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||||| || ||||| ||||||||||||||||| |||||||||||    
T  7928351 gctatcttggagaacttatgaaaataagctgaaaacaacttatgaacaat 7928302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 21828048 - 21828101
Alignment:
Q  76 aagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||| | || ||||||||||||||||| ||||||||||| |||||||||    
T  21828048 aagttcttctaaacagtctcacaaaacttatgccagtagataaggtcaaataag 21828101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 29316828 - 29316780
Alignment:
Q  4 agctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||||||||| || |||||||||||||||||||| || |||||||||    
T  29316828 agctatcttggagaacttatggaaataagctgaaaagaacttatgaaca 29316780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35379072 - 35379020
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaa 53  Q
    ||||||||||||||| |  ||||| ||||||||||||||||| ||||||||||    
T  35379072 ataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaacaa 35379020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42420011 - 42420062
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||||||| |||| |  |||||||||| ||||||||||||||||||||||    
T  42420011 ataagctatcctggatagcttatggaaatgagctgaaaacaatttatgaaca 42420062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 3312178 - 3312216
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  3312178 gtctcacaaaacttacgtcagtagataagctcaaataag 3312216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 18179050 - 18179088
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  18179050 gtctcacaaaacttatgttagtagataagctcaaataag 18179088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 42659180 - 42659142
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  42659180 gtctcacaaaacttatgccagtaaataagctcaaataag 42659142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 43456762 - 43456716
Alignment:
Q  2 taagctatcttggaaaatttatggaaataagctgaaaacaatttatg 48  Q
    |||||||||||| ||||  ||||||||||||||||||||| ||||||    
T  43456762 taagctatcttgaaaaacatatggaaataagctgaaaacagtttatg 43456716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 750684 - 750737
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||||||||| || ||||| ||||||||| ||||||  |||||||||||    
T  750684 ataagctatcttggagaacttatgcaaataagctcaaaacagcttatgaacaat 750737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 3235435 - 3235390
Alignment:
Q  6 ctatcttggaaaatttatggaaataagctgaaaacaatttatgaac 51  Q
    |||||||| ||| |||||||||||||||||||||||  ||||||||    
T  3235435 ctatcttgaaaagtttatggaaataagctgaaaacagcttatgaac 3235390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 15305760 - 15305813
Alignment:
Q  76 aagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||| ||| || || |||||||||||||| || ||||||||||||||||||    
T  15305760 aagttctaccaaacagtttcacaaaacttatgtcaatagataagctcaaataag 15305813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 15757627 - 15757590
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataa 128  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  15757627 gtctcacaaaacttatgccagtaaataagctcaaataa 15757590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40279281 - 40279334
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||| ||||| || ||||| |||| ||||||||||| ||||||||||||    
T  40279281 ataagctatattggagaacttatgaaaattagctgaaaacagtttatgaacaat 40279334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40279351 - 40279404
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||| ||||| || ||||| |||| ||||||||||| ||||||||||||    
T  40279351 ataagctatattggagaacttatgaaaattagctgaaaacagtttatgaacaat 40279404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 41809299 - 41809250
Alignment:
Q  3 aagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||||||| ||||  ||||||||||||||| ||||||| |||||||||    
T  41809299 aagctatcttagaaagcttatggaaataagctaaaaacaacttatgaaca 41809250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15977999 - 15978047
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatga 49  Q
    ||||||||| ||||| |  ||||| ||||||||||||||||||||||||    
T  15977999 ataagctattttggagagattatgaaaataagctgaaaacaatttatga 15978047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6102168 - 6102221
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  6102168 ataagctatctgggagaatttatggaaataagctgaaaacaatttatgaacaat 6102221  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 2295180 - 2295245
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataaggcaaatcaaa 139  Q
    ||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  2295180 ataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaataagccaattcaaa 2295245  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14630022 - 14629971
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  14630022 ataagctatcttggagactttatggaaataagctgaaaacaacttatgaaca 14629971  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 33204380 - 33204325
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||    
T  33204380 ataagttctcccaaacagtctcacaaaacttatgtcagtagataagctcaaataag 33204325  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17778971 - 17779022
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||||||||| ||||| |||||||||| |||||||| ||||||||||    
T  17778971 ataagctatcttggagaatttttggaaataaggtgaaaacagtttatgaaca 17779022  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45975704 - 45975763
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaattttata 60  Q
    ||||||||||||||| |||||||| ||||||||||||||||  ||||||| ||| |||||    
T  45975704 ataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaataatgttata 45975763  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12564555 - 12564509
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttat 47  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||    
T  12564555 ataagctatcttggagaacttatggaaataagctgaaaacaacttat 12564509  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 38503518 - 38503468
Alignment:
Q  4 agctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    |||||||||||| || ||||| ||||||||||||||||| |||||||||||    
T  38503518 agctatcttggagaacttatgaaaataagctgaaaacaacttatgaacaat 38503468  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 4768879 - 4768838
Alignment:
Q  7 tatcttggaaaatttatggaaataagctgaaaacaatttatg 48  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  4768879 tatcttggagaatttatggaaataagctgaaaacaagttatg 4768838  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27820393 - 27820340
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||||||||| |||||||| |||||||||||||| |  |||||||||||    
T  27820393 ataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaat 27820340  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 51695551 - 51695498
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||||||||| |||||||| |||||||||||||| |  |||||||||||    
T  51695551 ataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaat 51695498  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 1432599 - 1432654
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||| || ||||||||||| ||||| | || ||||||||||||||||    
T  1432599 ataagttcttccaaacagtctcacaaaatttatgtcggtggataagctcaaataag 1432654  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28689508 - 28689461
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatg 48  Q
    |||||||||||||||||  ||||| ||||||||||||||||| |||||    
T  28689508 ataagctatcttggaaagcttatgaaaataagctgaaaacaacttatg 28689461  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 29904835 - 29904890
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||||||  || || |||||||||||||||||  ||||||||||||||||||||    
T  29904835 ataagttctctcaaacagtctcacaaaacttatgcaagtagataagctcaaataag 29904890  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 38001679 - 38001734
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||| ||| || ||||||||||||||||| |||| ||||| ||||||||||    
T  38001679 ataagttctcccaaacagtctcacaaaacttatgtcagttgataaactcaaataag 38001734  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 50644241 - 50644186
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||| ||| || |||||||||||| ||||  ||||||||||||||||||||    
T  50644241 ataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataag 50644186  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 1232959 - 1232921
Alignment:
Q  3 aagctatcttggaaaatttatggaaataagctgaaaaca 41  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  1232959 aagctatcttggagaatttatgaaaataagctgaaaaca 1232921  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 14385762 - 14385724
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  14385762 gtctcacgaaacttatgccagtagataagctcaaataag 14385724  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 38116046 - 38116008
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  38116046 gtctcacaaaacttacgtcagtagataagctcaaataag 38116008  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7137054 - 7137005
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaa 50  Q
    ||||||||||||||| || ||||| |||||||||||||| || |||||||    
T  7137054 ataagctatcttggagaacttatgaaaataagctgaaaataacttatgaa 7137005  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34290250 - 34290299
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaa 50  Q
    ||||||||||||| | || ||||| ||||||||||||||||| |||||||    
T  34290250 ataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaa 34290299  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 35669000 - 35669033
Alignment:
Q  15 aaaatttatggaaataagctgaaaacaatttatg 48  Q
    |||||||||||||||||| |||||||||||||||    
T  35669000 aaaatttatggaaataagttgaaaacaatttatg 35669033  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 1684068 - 1684036
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctca 123  Q
    ||||||||||||||||| |||||||||||||||    
T  1684068 gtctcacaaaacttatgtcagtagataagctca 1684036  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 10233634 - 10233578
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataagg 130  Q
    ||||||||||||| || |||| ||||||| |||| |||| ||||||||| |||||||    
T  10233634 ataagttcttccaaacagtcttacaaaacatatgtcagtggataagctctaataagg 10233578  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 32859983 - 32859951
Alignment:
Q  20 ttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||| |||||||||||||||||||||||    
T  32859983 ttatggaaacaagctgaaaacaatttatgaaca 32859951  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 42575436 - 42575396
Alignment:
Q  93 ctcacaaaacttatgacagtagataagctcaaataaggcaa 133  Q
    ||||||||| |||||  ||||||||||||||||||||||||    
T  42575436 ctcacaaaatttatgctagtagataagctcaaataaggcaa 42575396  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 47885087 - 47885039
Alignment:
Q  3 aagctatcttggaaaatttatggaaataagctgaaaacaatttatgaac 51  Q
    |||||||| | || || ||||||||||||||||||||||| ||||||||    
T  47885087 aagctatcatagagaacttatggaaataagctgaaaacaacttatgaac 47885039  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 12425657 - 12425717
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataaggcaaa 134  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| ||||    
T  12425657 ataagttctcccaaacagtctcacaaaacttatgacagtagataagctcaaataagtcaaa 12425717  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 15015927 - 15015988
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataaggcaaat 135  Q
    ||||||||| ||| || |||||||||| |||||| ||||||||||||||||||||| |||||    
T  15015927 ataagttctcccaaacagtctcacaaagcttatgtcagtagataagctcaaataagccaaat 15015988  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7984983 - 7985035
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaa 53  Q
    ||||||||||||||| |||||||| ||||||||||||||||  ||||||||||    
T  7984983 ataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaacaa 7985035  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 16937869 - 16937814
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||| ||  ||||||||||||||||  ||||||||||||||||||||    
T  16937869 ataagttcttccaaacactctcacaaaacttatgctagtagataagctcaaataag 16937814  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 32372698 - 32372751
Alignment:
Q  76 aagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||| || ||||||||||||||||| |||||||||||  ||||||||    
T  32372698 aagttcttccaaacagtctcacaaaacttatgccagtagataaggccaaataag 32372751  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 34736511 - 34736458
Alignment:
Q  76 aagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||| ||| |||||||||||||||||||| ||  |||||||||||||||||    
T  34736511 aagttctcccaaactgtctcacaaaacttatgtcaccagataagctcaaataag 34736458  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36318788 - 36318828
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaaca 41  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  36318788 ataagctatcttggagaatttatgtaaataagctgaaaaca 36318828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 36326026 - 36326066
Alignment:
Q  2 taagctatcttggaaaatttatggaaataagctgaaaacaa 42  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  36326026 taagctatcttggagaatttatgtaaataagctgaaaacaa 36326066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4014480 - 4014429
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||||||||| || ||||| ||||||||||||||||  |||||||||    
T  4014480 ataagctatcttggagaacttatgaaaataagctgaaaacagcttatgaaca 4014429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28413340 - 28413289
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||| ||||||||| | |||||||||||||||||||||||  |||||||||    
T  28413340 ataagttatcttggagagtttatggaaataagctgaaaacagcttatgaaca 28413289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 8334592 - 8334634
Alignment:
Q  8 atcttggaaaatttatggaaataagctgaaaacaatttatgaa 50  Q
    |||||| |||| ||||| |||||||||||||||||||||||||    
T  8334592 atcttgaaaaacttatgaaaataagctgaaaacaatttatgaa 8334634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 11700263 - 11700301
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  11700263 gtctcacaaaacttatgccagtggataagctcaaataag 11700301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 22209793 - 22209755
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  22209793 gtctcagaaaacttatgccagtagataagctcaaataag 22209755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 35445813 - 35445775
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  35445813 gtctcacaaaacttatgtcagtagataaactcaaataag 35445775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7319064 - 7319011
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||||||||| || ||||| ||||||||||| ||||| ||||| |||||    
T  7319064 ataagctatcttggagaacttatgaaaataagctgagaacaacttatggacaat 7319011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 34160751 - 34160796
Alignment:
Q  7 tatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||| || ||||| |||||||||||||||| ||||||||||    
T  34160751 tatcttggagaacttatgaaaataagctgaaaacagtttatgaaca 34160796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 1899179 - 1899215
Alignment:
Q  12 tggaaaatttatggaaataagctgaaaacaatttatg 48  Q
    |||| |||||||||||||||||||||||||| |||||    
T  1899179 tggagaatttatggaaataagctgaaaacaacttatg 1899215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 6096632 - 6096684
Alignment:
Q  75 taagttcttccagactgtctcacaaaacttatgacagtagataagctcaaata 127  Q
    |||||||||||  |  ||||||||||||||||| ||||||||||| |||||||    
T  6096632 taagttcttcctaaaagtctcacaaaacttatgccagtagataagttcaaata 6096684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7674662 - 7674702
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaaca 41  Q
    ||||||||||||||| ||||| || ||||||||||||||||    
T  7674662 ataagctatcttggagaatttgtgaaaataagctgaaaaca 7674702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 19138754 - 19138726
Alignment:
Q  20 ttatggaaataagctgaaaacaatttatg 48  Q
    |||||||||||||||||||||||||||||    
T  19138754 ttatggaaataagctgaaaacaatttatg 19138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3537001 - 3536948
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||||||||||    
T  3537001 ataagatatcttggagaacttatggaaataagctgaaaacaatttatgaacaat 3536948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 38602411 - 38602466
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||| ||| || | ||||||||||||||| |||||||||||||||||||||    
T  38602411 ataagttctcccaaacagcctcacaaaacttatgtcagtagataagctcaaataag 38602466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 9130288 - 9130250
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  9130288 gtctcacaaaacttatgccagtagataagctcaaataag 9130250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 30251439 - 30251385
Alignment:
Q  75 taagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||||| ||| || ||||||| ||||||||| |||||||||||||||||||||    
T  30251439 taagttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaataag 30251385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 36963339 - 36963285
Alignment:
Q  75 taagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||||| ||| || ||||||||||||||||| |||||||| ||||||||||||    
T  36963339 taagttctcccaaacagtctcacaaaacttatgccagtagattagctcaaataag 36963285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 1058061 - 1058008
Alignment:
Q  76 aagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||| ||| || |||||||||||||||||  ||||||||||||||||||||    
T  1058061 aagttctcccaaacagtctcacaaaacttatgtaagtagataagctcaaataag 1058008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 29818913 - 29818877
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaata 127  Q
    |||||||||||||||||| ||||||||||||||||||    
T  29818913 gtctcacaaaacttatgatagtagataagctcaaata 29818877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43504765 - 43504805
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaaca 41  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  43504765 ataagctatcttggagaacttatggaaataagctgaaaaca 43504805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28769395 - 28769348
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatg 48  Q
    ||||||||| ||||| | |||||||||||||||||||||||| |||||    
T  28769395 ataagctattttggagagtttatggaaataagctgaaaacaacttatg 28769348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42215138 - 42215087
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||||||||| |  ||||| ||||||||||||||||| |||||||||    
T  42215138 ataagctatcttggagagcttatgtaaataagctgaaaacaacttatgaaca 42215087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 43717920 - 43717865
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||| ||| |  ||||||||||||||||| || ||||||||||||||||||    
T  43717920 ataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataag 43717865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44401575 - 44401626
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||| ||| |||| || |||||||||||||||||||||||| ||||||||    
T  44401575 ataagccatcctggagaacttatggaaataagctgaaaacaatgtatgaaca 44401626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 26771349 - 26771403
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataa 128  Q
    ||||||||| ||| || ||||||||||||||||| | ||||||||||||| ||||    
T  26771349 ataagttctcccaaacagtctcacaaaacttatgcccgtagataagctcagataa 26771403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 35534582 - 35534544
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  35534582 gtctcacaaaacttatgttagtagataagctcaaataag 35534544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9956870 - 9956817
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    |||| |||||||||| || ||||| ||||||||||||||| | |||||||||||    
T  9956870 ataatctatcttggagaacttatgaaaataagctgaaaactacttatgaacaat 9956817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 12497041 - 12497004
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataa 128  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  12497041 gtctcacaaaacttatgccaggagataagctcaaataa 12497004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 12976296 - 12976356
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataaggcaaa 134  Q
    ||||||||| | | || |||||||||| ||||||  |||||||||||||||||||| ||||    
T  12976296 ataagttctactaaacagtctcacaaaccttatgctagtagataagctcaaataagccaaa 12976356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 52315253 - 52315128
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaattttataagatgnnnnnnnnataagttcttccagactgtctcacaaa 100  Q
    ||||||||| |||||||| ||||| ||||||||||||| ||| ||||||| ||| | ||||| ||        ||||||||||||| ||  |||||||||    
T  52315253 ataagctattttggaaaacttatgaaaataagctgaaagcaacttatgaataatgtgataagttgttttg---ataagttcttccaaacaatctcacaaa 52315157  T
Q  101 acttatgacagtagataagctcaaataag 129  Q
    ||||| | |||||||||| ||||||||||    
T  52315156 acttacgtcagtagataaactcaaataag 52315128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 27043816 - 27043761
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||| |||||||| || || |||||||||||||| |||||||||||||||||||||    
T  27043816 ataacttcttccaaacagtttcacaaaacttatgtcagtagataagctcaaataag 27043761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 54426144 - 54426182
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  54426144 gtctcacaaaacttatgccagtagataagctcaaataag 54426182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 1312860 - 1312904
Alignment:
Q  6 ctatcttggaaaatttatggaaataagctgaaaacaatttatgaa 50  Q
    |||||||||| | ||||||||||||||||||||||| ||||||||    
T  1312860 ctatcttggagagtttatggaaataagctgaaaacagtttatgaa 1312904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 24929526 - 24929558
Alignment:
Q  20 ttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||||||||||||||||||||||||||||||    
T  24929526 ttatggaaataagctgaaaacaatttatgaaca 24929558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 39691118 - 39691070
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataaggcaaatcaaa 139  Q
    |||||||||||||||||  |||||||||||||||||||| ||| |||||    
T  39691118 gtctcacaaaacttatgctagtagataagctcaaataagtcaattcaaa 39691070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7694066 - 7694015
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||| |||| |||| | |||||||||||||||||||||||| |||||||||    
T  7694066 ataagttatcctggagagtttatggaaataagctgaaaacaacttatgaaca 7694015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 13126562 - 13126507
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||| || |||||||||||||||||  ||||| |||||| |||||||    
T  13126562 ataagttcttccaaacagtctcacaaaacttatgttagtaggtaagctaaaataag 13126507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35064869 - 35064920
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||| |||| |||| | ||||||||||||||||||||||||||||| ||||    
T  35064869 ataagatatcatggagagtttatggaaataagctgaaaacaatttataaaca 35064920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 15173272 - 15173234
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  15173272 gtctcacaaaacttatgtcagtagataagttcaaataag 15173234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 17822834 - 17822796
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  17822834 gtctcacagaacttatgtcagtagataagctcaaataag 17822796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 21731642 - 21731588
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataa 128  Q
    ||||||||| ||| ||  |||||||||||||||| ||||||||| ||||||||||    
T  21731642 ataagttctcccaaacaatctcacaaaacttatgtcagtagatatgctcaaataa 21731588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 41336845 - 41336899
Alignment:
Q  75 taagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||||||||  ||| ||||||||||||||||  ||||||||| ||||||||||    
T  41336845 taagttcttcctaactatctcacaaaacttatgtgagtagataaactcaaataag 41336899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 43824298 - 43824348
Alignment:
Q  2 taagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||| |||| ||||||  ||||||||||||||||||||||| |||||||||    
T  43824298 taagttatcctggaaagcttatggaaataagctgaaaacaacttatgaaca 43824348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 35571615 - 35571562
Alignment:
Q  76 aagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||| ||| ||| || |||||||||||||  ||||||||||||||||||||    
T  35571615 aagttctcccaaactatcccacaaaacttatgctagtagataagctcaaataag 35571562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 8705025 - 8705077
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaat 126  Q
    ||||||||| |||  | ||||||||||||||||| || |||||||||||||||    
T  8705025 ataagttctcccaatcagtctcacaaaacttatgtcaatagataagctcaaat 8705077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14011248 - 14011288
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaaca 41  Q
    ||||||||||||||| |  ||||||||||||||||||||||    
T  14011248 ataagctatcttggagagcttatggaaataagctgaaaaca 14011288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 49202660 - 49202712
Alignment:
Q  2 taagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    |||||||||||||| || | ||| ||||||| ||||||||| |||||||||||    
T  49202660 taagctatcttggataactaatgaaaataagttgaaaacaacttatgaacaat 49202712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 51630125 - 51630165
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaaca 41  Q
    ||||||||||||| | |||||||| ||||||||||||||||    
T  51630125 ataagctatcttgaagaatttatgaaaataagctgaaaaca 51630165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 18405817 - 18405763
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataa 128  Q
    |||||||||| || || ||||||||||||||||| ||||||||||||||||||||    
T  18405817 ataagttcttgcaaacagtctcacaaaacttatgtcagtagataagctcaaataa 18405763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 31365174 - 31365119
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||| ||| || ||||||||||||||||| || ||||||||||||||||||    
T  31365174 ataagttctcccaaacagtctcacaaaacttatgccaatagataagctcaaataag 31365119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 21367681 - 21367806
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaattttataagatgnnnnnnnnataagttcttccagactgtctcacaaa 100  Q
    ||||||||||||||| || ||||| ||||||||||||||||  || |||||||| | ||||| ||        ||||||||| ||| || ||| ||||||    
T  21367681 ataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctg---ttttcataagttctcccaaacagtcccacaaa 21367777  T
Q  101 acttatgacagtagataagctcaaataag 129  Q
    |||||||   |||||||| ||||||||||    
T  21367778 acttatgctggtagataatctcaaataag 21367806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23808120 - 23808069
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||||||||| | |||||| ||||||| |||||||||||| ||||||    
T  23808120 ataagctatcttggagagtttatgaaaataagatgaaaacaatttgtgaaca 23808069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 24684792 - 24684753
Alignment:
Q  90 tgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  24684792 tgtctcaaaaaacttatgccagtagataagctcaaataag 24684753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 25447227 - 25447176
Alignment:
Q  78 gttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||| || || ||||||||||||||||| |||||||||| ||||||||||    
T  25447227 gttcttgcaaacagtctcacaaaacttatgtcagtagataaactcaaataag 25447176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33883806 - 33883755
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||||||||| || || ||||| ||||||||||||||||| |||||||||    
T  33883806 ataagctatcttagagaacttatgaaaataagctgaaaacaacttatgaaca 33883755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37273148 - 37273195
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatg 48  Q
    ||||||||||||||| || ||||||||||||| ||||||||| |||||    
T  37273148 ataagctatcttggagaacttatggaaataagttgaaaacaacttatg 37273195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39602266 - 39602215
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||||||||| || || ||||| ||||||| |||||||||||||||||||    
T  39602266 ataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaaca 39602215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 3845532 - 3845498
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaa 125  Q
    ||||||||||||||||| |||||||||||||||||    
T  3845532 gtctcacaaaacttatgccagtagataagctcaaa 3845498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 5448545 - 5448583
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  5448545 gtcttacaaaacttatgtcagtagataagctcaaataag 5448583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23793598 - 23793644
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttat 47  Q
    |||||||||||||||||  |||| |||||||||||||||||| ||||    
T  23793598 ataagctatcttggaaagcttatagaaataagctgaaaacaacttat 23793644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 24085307 - 24085269
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  24085307 gtctcacaaaacttatgccggtagataagctcaaataag 24085269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 38902172 - 38902214
Alignment:
Q  97 caaaacttatgacagtagataagctcaaataaggcaaatcaaa 139  Q
    ||||||||||| |||||||||||||||||| |||||| |||||    
T  38902172 caaaacttatgccagtagataagctcaaatgaggcaattcaaa 38902214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41671324 - 41671370
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttat 47  Q
    ||||||||||||| |||||||||| ||||||| ||||||||| ||||    
T  41671324 ataagctatcttgaaaaatttatgaaaataagttgaaaacaacttat 41671370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2719482 - 2719535
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||||||||| || ||||| ||||||||||| ||||| ||||| |||||    
T  2719482 ataagctatcttggagaacttatgaaaataagctgagaacaacttatggacaat 2719535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 5436158 - 5436211
Alignment:
Q  76 aagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||| | || || ||||||||||||||||||| ||||| ||||||||||    
T  5436158 aagttcttcaaaacagtgtcacaaaacttatgacagttgataaactcaaataag 5436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 34610770 - 34610737
Alignment:
Q  96 acaaaacttatgacagtagataagctcaaataag 129  Q
    |||||||||||| |||||||||||||||||||||    
T  34610770 acaaaacttatgtcagtagataagctcaaataag 34610737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35394554 - 35394501
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaat 54  Q
    ||||||||||||| | |||||||| ||||||| ||||||||  |||||||||||    
T  35394554 ataagctatcttgaagaatttatgaaaataagttgaaaacagcttatgaacaat 35394501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44747464 - 44747427
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaa 38  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  44747464 ataagctatcttggaaaacttatgaaaataagctgaaa 44747427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 45432976 - 45432944
Alignment:
Q  20 ttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||||||||||||||||| |||||||||    
T  45432976 ttatggaaataagctgaaaacaacttatgaaca 45432944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 45555009 - 45555041
Alignment:
Q  20 ttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||||||||||||||||||| ||||||||||    
T  45555009 ttatggaaataagctgaaaacattttatgaaca 45555041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 18765368 - 18765427
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataaggcaa 133  Q
    ||||||||| ||| || ||||||||||||||||| || ||||||||||||||||| ||||    
T  18765368 ataagttctcccaaacagtctcacaaaacttatgtcaatagataagctcaaataaagcaa 18765427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 19302531 - 19302484
Alignment:
Q  92 tctcacaaaacttatgacagtagataagctcaaataaggcaaatcaaa 139  Q
    |||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  19302531 tctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaa 19302484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 33678794 - 33678919
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaacaattttataagatgnnnnnnnnataagttcttccagactgtctcacaaa 100  Q
    |||||||||||||||||| || || ||||||| ||||||||  | ||||||||| ||||||| ||        ||||||||| ||| | |||||||||||    
T  33678794 ataagctatcttggaaaacttgtgaaaataagttgaaaacatctcatgaacaatgttataagttg---ttttcataagttctcccaaattgtctcacaaa 33678890  T
Q  101 acttatgacagtagataagctcaaataag 129  Q
    |||||||  |||||||||| | |||||||    
T  33678891 acttatgcaagtagataagtttaaataag 33678919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 28128450 - 28128408
Alignment:
Q  2 taagctatcttggaaaatttatggaaataagctgaaaacaatt 44  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  28128450 taagctattttggagaatttatggaaataagctgaaaacaatt 28128408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39280983 - 39281030
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatg 48  Q
    ||||||||||||||| ||  |||||||||||||||||||||| |||||    
T  39280983 ataagctatcttggagaacatatggaaataagctgaaaacaacttatg 39281030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 22283615 - 22283577
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  22283615 gtctcacaaaatttatgacagtagataagttcaaataag 22283577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 27863694 - 27863656
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  27863694 gtctcacaaaacttatgccagtggataagctcaaataag 27863656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 33894642 - 33894688
Alignment:
Q  2 taagctatcttggaaaatttatggaaataagctgaaaacaatttatg 48  Q
    ||||||||| |||||| ||||| |||||||||||||||||| |||||    
T  33894642 taagctatcctggaaagtttattgaaataagctgaaaacaacttatg 33894688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 5947327 - 5947380
Alignment:
Q  76 aagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    ||||||||||| || |||||| |||||||||  || ||||||||||||||||||    
T  5947327 aagttcttccaaacagtctcataaaacttataccaatagataagctcaaataag 5947380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 25130143 - 25130094
Alignment:
Q  3 aagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||||||||||||| || ||||| ||||||||||  |||||||||    
T  25130143 aagctatcttggaaaatttctgaaaatatgctgaaaacagcttatgaaca 25130094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 33601379 - 33601342
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataa 128  Q
    ||||||||||||||||| || |||||||||||||||||    
T  33601379 gtctcacaaaacttatgccaatagataagctcaaataa 33601342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 34036001 - 34036066
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataaggcaaatcaaa 139  Q
    |||||||||||||    ||||||||| || |||| ||||||||||||||||||||| ||| |||||    
T  34036001 ataagttcttccaagtagtctcacaatacatatgtcagtagataagctcaaataagtcaattcaaa 34036066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 34744115 - 34744164
Alignment:
Q  77 agttcttccagactgtctcacaaaacttatgacagtagataagctcaaat 126  Q
    |||||||||| || |||||||||| ||||||  |||||||||||||||||    
T  34744115 agttcttccaaacagtctcacaaatcttatgttagtagataagctcaaat 34744164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 5569582 - 5569546
Alignment:
Q  147 tttgatttgagaaatggacgaaggagacaatgtgaac 183  Q
    |||||||||||||||||| |||||||||||| |||||    
T  5569582 tttgatttgagaaatggatgaaggagacaatatgaac 5569546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 848073 - 848131
Alignment:
Q  74 ataagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataaggcaa 133  Q
    ||||||||||||| || ||||||||||||||||| |  ||||||||||||||||||||||    
T  848073 ataagttcttccaaacagtctcacaaaacttatg-ctatagataagctcaaataaggcaa 848131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34939758 - 34939805
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaacaatttatg 48  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||||    
T  34939758 ataagctatcctggagagtttatggaaataagctgaaaacaatttatg 34939805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 17241305 - 17241257
Alignment:
Q  4 agctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||||||||| | |||||||||||||| ||||||||| |||||||||    
T  17241305 agctatcttggagagtttatggaaataagttgaaaacaacttatgaaca 17241257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 835226 - 835188
Alignment:
Q  95 cacaaaacttatgacagtagataagctcaaataaggcaa 133  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  835226 cacaaaacttatgctagtagataagctcaaataaggcaa 835188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 4420658 - 4420708
Alignment:
Q  2 taagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 52  Q
    |||||||||||||| |  ||||||||||||||||||||||  |||||||||    
T  4420658 taagctatcttggagagcttatggaaataagctgaaaacagcttatgaaca 4420708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 35069581 - 35069543
Alignment:
Q  91 gtctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  35069581 gtcttacaaaacttatgtcagtagataagctcaaataag 35069543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 21405122 - 21405085
Alignment:
Q  92 tctcacaaaacttatgacagtagataagctcaaataag 129  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  21405122 tctcacaaaacttatgtcagtatataagctcaaataag 21405085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 835305 - 835265
Alignment:
Q  1 ataagctatcttggaaaatttatggaaataagctgaaaaca 41  Q
    ||||||||||||||| || ||||| ||||||||||||||||    
T  835305 ataagctatcttggagaacttatgaaaataagctgaaaaca 835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 2455074 - 2455126
Alignment:
Q  76 aagttcttccagactgtctcacaaaacttatgacagtagataagctcaaataa 128  Q
    ||||||| ||| || |||||||||||||||||  |||||||||| ||||||||    
T  2455074 aagttctcccaaacagtctcacaaaacttatgttagtagataagttcaaataa 2455126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 6536980 - 6537012
Alignment:
Q  20 ttatggaaataagctgaaaacaatttatgaaca 52  Q
    ||||||||||||||||||||||| |||||||||    
T  6536980 ttatggaaataagctgaaaacaacttatgaaca 6537012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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