View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_54 (Length: 250)
Name: NF18173_high_54
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 24563780 - 24563559
Alignment:
| Q |
19 |
ttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaagataatgagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563780 |
ttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaagataatgagt |
24563681 |
T |
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| Q |
119 |
tgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctcaaaa |
218 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563680 |
tgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttatgaaccttcttggaattggttcggatcacactgttatctcaaaa |
24563581 |
T |
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| Q |
219 |
gctttggaagatatctcctatg |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
24563580 |
gctttggaagatatctcctatg |
24563559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 9798688 - 9798586
Alignment:
| Q |
19 |
ttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaagataatgagt |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||| || | ||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9798688 |
ttaattacggatgtagttcgagatttttaatgatacactattattagagcagacaaatggagggaatccaagaagatatgctcaactaaagataaggagt |
9798589 |
T |
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| Q |
119 |
tga |
121 |
Q |
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||| |
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| T |
9798588 |
tga |
9798586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 44337525 - 44337428
Alignment:
| Q |
118 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctca |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||| | |||||||||||||||||| ||||||| |
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| T |
44337525 |
ttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttacgcaccttcttgaatttggttcggatcacactgctatctca |
44337428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 45535977 - 45536060
Alignment:
| Q |
21 |
aattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaac |
104 |
Q |
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|||||||||||||| | || ||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||| |
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| T |
45535977 |
aattacggatgtaggtcgaaatttttaatgatacactattattagaatagaaaaagggaggaaatccaagaagatatgctcaac |
45536060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 45536177 - 45536235
Alignment:
| Q |
118 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatg |
176 |
Q |
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||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
45536177 |
ttgatcgtggtatagctaccaagggcttttccaatacatttgctctgattcaagttatg |
45536235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 44337696 - 44337629
Alignment:
| Q |
44 |
tttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaactaaagata |
112 |
Q |
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|||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| |||||| |||||| |
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| T |
44337696 |
tttaatgatacactattattagaaca-gaaaagtgagggaatccaagaaactatgttcaactgaagata |
44337629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 19190242 - 19190303
Alignment:
| Q |
43 |
ttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaac |
104 |
Q |
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|||||||||| ||||||| ||||||| |||||| |||||||||||||||| |||||||||| |
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| T |
19190242 |
ttttaatgatgtactattattagaacagaaaaagtgagggaatccaagaagctatgctcaac |
19190303 |
T |
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