View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18173_high_57 (Length: 247)

Name: NF18173_high_57
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18173_high_57
NF18173_high_57
[»] chr2 (20 HSPs)
chr2 (1-229)||(29628807-29629035)
chr2 (119-226)||(29629192-29629298)
chr2 (139-179)||(29628549-29628589)
chr2 (111-159)||(41225668-41225716)
chr2 (31-86)||(28803601-28803655)
chr2 (31-85)||(39567824-39567878)
chr2 (31-68)||(9878777-9878814)
chr2 (1-75)||(10143103-10143178)
chr2 (11-80)||(3611152-3611222)
chr2 (6-83)||(36114342-36114420)
chr2 (1-82)||(36114587-36114669)
chr2 (31-65)||(1939427-1939461)
chr2 (31-85)||(4026738-4026792)
chr2 (2-84)||(2416235-2416318)
chr2 (31-68)||(17952796-17952833)
chr2 (17-78)||(29629071-29629131)
chr2 (31-68)||(32098403-32098440)
chr2 (1-79)||(42907286-42907365)
chr2 (31-75)||(27288564-27288608)
chr2 (31-67)||(31461377-31461413)
[»] chr3 (15 HSPs)
chr3 (2-84)||(32095256-32095338)
chr3 (31-75)||(16790183-16790227)
chr3 (35-87)||(23815972-23816024)
chr3 (32-87)||(31403277-31403332)
chr3 (1-55)||(30956690-30956745)
chr3 (1-55)||(30972502-30972557)
chr3 (31-59)||(10101571-10101599)
chr3 (31-59)||(10212496-10212524)
chr3 (31-59)||(10357380-10357408)
chr3 (31-75)||(20173983-20174027)
chr3 (31-87)||(34235171-34235227)
chr3 (7-84)||(34638034-34638113)
chr3 (36-84)||(35127471-35127519)
chr3 (23-59)||(36887469-36887504)
chr3 (31-59)||(54775075-54775103)
[»] chr5 (9 HSPs)
chr5 (7-80)||(465880-465954)
chr5 (31-114)||(9202843-9202921)
chr5 (31-83)||(7674571-7674623)
chr5 (3-87)||(42569046-42569131)
chr5 (31-78)||(40048375-40048422)
chr5 (1-84)||(3566382-3566466)
chr5 (34-75)||(18704133-18704174)
chr5 (31-87)||(20982230-20982285)
chr5 (37-85)||(42573880-42573928)
[»] chr6 (14 HSPs)
chr6 (31-112)||(264270-264346)
chr6 (5-56)||(507170-507222)
chr6 (2-75)||(1810368-1810439)
chr6 (2-84)||(9093621-9093704)
chr6 (1-75)||(24836263-24836338)
chr6 (1-81)||(12631537-12631615)
chr6 (31-68)||(33068656-33068693)
chr6 (31-84)||(33736760-33736813)
chr6 (31-75)||(4248889-4248933)
chr6 (31-59)||(5328921-5328949)
chr6 (31-83)||(9559636-9559688)
chr6 (31-75)||(11340720-11340764)
chr6 (31-75)||(31670970-31671014)
chr6 (31-59)||(31672017-31672045)
[»] chr4 (16 HSPs)
chr4 (31-87)||(6364068-6364124)
chr4 (34-87)||(11389445-11389498)
chr4 (31-75)||(30024631-30024675)
chr4 (33-85)||(44249207-44249259)
chr4 (6-85)||(3155524-3155604)
chr4 (9-84)||(17883990-17884066)
chr4 (5-83)||(2987112-2987191)
chr4 (31-84)||(42641728-42641781)
chr4 (34-75)||(46176104-46176145)
chr4 (31-59)||(23815317-23815345)
chr4 (2-83)||(26520294-26520376)
chr4 (31-67)||(27968076-27968112)
chr4 (31-75)||(28623220-28623264)
chr4 (31-59)||(35743251-35743279)
chr4 (31-75)||(44007967-44008011)
chr4 (7-56)||(47800580-47800630)
[»] chr1 (16 HSPs)
chr1 (31-75)||(36641806-36641850)
chr1 (4-84)||(37841920-37842001)
chr1 (2-83)||(51190784-51190866)
chr1 (1-77)||(29793711-29793788)
chr1 (1-55)||(2194424-2194477)
chr1 (2-68)||(2462905-2462970)
chr1 (4-54)||(34619445-34619496)
chr1 (1-55)||(38578478-38578533)
chr1 (31-67)||(4200168-4200204)
chr1 (31-75)||(4700161-4700205)
chr1 (31-67)||(7707158-7707194)
chr1 (2-55)||(9572173-9572227)
chr1 (31-59)||(14737800-14737828)
chr1 (31-59)||(27140432-27140460)
chr1 (31-59)||(49517017-49517045)
chr1 (31-59)||(49557088-49557116)
[»] chr7 (10 HSPs)
chr7 (31-85)||(42656436-42656490)
chr7 (31-75)||(24973875-24973919)
chr7 (31-68)||(1432062-1432099)
chr7 (31-84)||(6552365-6552417)
chr7 (31-87)||(5373145-5373200)
chr7 (31-67)||(21853211-21853247)
chr7 (2-55)||(34083590-34083644)
chr7 (31-59)||(39591562-39591590)
chr7 (31-75)||(46213734-46213778)
chr7 (31-87)||(47510030-47510086)
[»] chr8 (14 HSPs)
chr8 (2-83)||(10114413-10114494)
chr8 (31-75)||(42597332-42597376)
chr8 (31-85)||(26215417-26215471)
chr8 (31-85)||(40280300-40280353)
chr8 (31-76)||(3945204-3945249)
chr8 (32-73)||(12361125-12361166)
chr8 (31-68)||(29699192-29699229)
chr8 (31-75)||(11188250-11188294)
chr8 (31-87)||(14482122-14482177)
chr8 (31-59)||(26820146-26820174)
chr8 (37-85)||(27492880-27492928)
chr8 (31-75)||(34563181-34563225)
chr8 (7-84)||(37444485-37444563)
chr8 (31-59)||(40728513-40728541)
[»] scaffold0024 (1 HSPs)
scaffold0024 (31-84)||(27499-27551)
[»] scaffold0590 (1 HSPs)
scaffold0590 (31-75)||(1169-1213)
[»] scaffold0549 (2 HSPs)
scaffold0549 (31-75)||(1819-1863)
scaffold0549 (31-75)||(3909-3953)
[»] scaffold0275 (1 HSPs)
scaffold0275 (31-75)||(2762-2806)
[»] scaffold0100 (1 HSPs)
scaffold0100 (31-75)||(42548-42592)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29628807 - 29629035
Alignment:
Q  1 acttatagcttatacaaaaacaataacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataagcaccacacttgtgcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29628807 acttatagcttatacaaaaacaataacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataagcaccacacttgtgcta 29628906  T
Q  101 taagttgcaaataattctaaagcaaaacaggatacatcaatacttccaaagatcactcaaaagacagccaaaccataaaaatcaataatcaataatacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29628907 taagttgcaaataattctaaagcaaaacaggatacatcaatacttccaaagatcactcaaaagacagccaaaccataaaaatcaataatcaataatacaa 29629006  T
Q  201 atccaaacaacaagcattgatgtaagata 229  Q
    |||||||||||||||||||||||||||||    
T  29629007 atccaaacaacaagcattgatgtaagata 29629035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 29629192 - 29629298
Alignment:
Q  119 aaagcaaaacaggatacatcaatacttccaaagatcactcaaaagacagccaaaccataaaaatcaataatcaataatacaaatccaaacaacaagcatt 218  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |  |||||||||| || ||||| |||||||||| || |    
T  29629192 aaagcaaaacaggatacatcaatacttccaaagatcaatcaaaagagagccaaaccattaaca-gaataatcaatgatccaaattcaaacaacaaccact 29629290  T
Q  219 gatgtaag 226  Q
    || |||||    
T  29629291 gacgtaag 29629298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 29628549 - 29628589
Alignment:
Q  139 aatacttccaaagatcactcaaaagacagccaaaccataaa 179  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  29628549 aatacttccaaggatcactcaaaagacagccaaaccataaa 29628589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 41225668 - 41225716
Alignment:
Q  111 ataattctaaagcaaaacaggatacatcaatacttccaaagatcactca 159  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  41225668 ataattctagagcaaaaaaggatacaccaatacttccaaagatcactca 41225716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 28803601 - 28803655
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagca 86  Q
    |||||||||||||||||| |||||||||| |||||||| |||||| ||||||||||    
T  28803601 tattttatcttttgttatcgaaataacttatatataagcacttat-atgataagca 28803655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 39567878 - 39567824
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagc 85  Q
    ||||||||||||||||||||||||| ||| || | |||| |||||||||||||||    
T  39567878 tattttatcttttgttatagaaatatcttatacacaagtgcttatcatgataagc 39567824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 9878777 - 9878814
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataag 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9878777 tattttatcttttgttatagaaatagcttttatataag 9878814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10143178 - 10143103
Alignment:
Q  1 acttatagcttatacaaaaacaata--acttatattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||| ||||||| |   ||||| |||||||||||||||||||||||||||| || ||||| ||||||    
T  10143178 acttatagcttatataaaaacagtttgactta-attttatcttttgttatagaaataacttatacataagcacttat 10143103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 3611222 - 3611152
Alignment:
Q  11 tatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatga 80  Q
    ||||||||||||||  ||||| ||||||| |||||| |||||||||||||| || ||||| |||||||||||    
T  3611222 tatacaaaaacaatttaactt-tattttaccttttgctatagaaataacttatacataagcacttatcatga 3611152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 36114420 - 36114342
Alignment:
Q  6 tagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataa 83  Q
    ||||| |||||||||||||  ||||| ||||||||||||||| ||| ||||| ||  |||||||| ||||||||||||||    
T  36114420 tagctaatacaaaaacaatttaactt-tattttatcttttgtcataaaaatagctaatatataagcacttatcatgataa 36114342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 36114587 - 36114669
Alignment:
Q  1 acttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgata 82  Q
    |||||| |||||||||||||||||  ||||| |||||||||||||||||||||| ||  || |  ||||| |||||||||||||    
T  36114587 acttattgcttatacaaaaacaatttaactt-tattttatcttttgttatagaactaggttatgcataagcacttatcatgata 36114669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 1939427 - 1939461
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatat 65  Q
    ||||||||||||||||||||||||||||| |||||    
T  1939427 tattttatcttttgttatagaaataacttatatat 1939461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 4026792 - 4026738
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagc 85  Q
    |||||||||||||| |||| ||||| ||| || ||||| ||||||||||||||||    
T  4026792 tattttatcttttgctataaaaatagcttatagataagcacttatcatgataagc 4026738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 2416318 - 2416235
Alignment:
Q  2 cttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    |||||||||||||  ||||||||  |||||  ||||||||||||| || ||||||||||| || ||||| ||||| |||||||||    
T  2416318 cttatagcttatatcaaaacaatttaacttc-attttatcttttgctacagaaataacttatacataagcacttaacatgataag 2416235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 17952796 - 17952833
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataag 68  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  17952796 tattttatcttttgttatagaaatagcttatatataag 17952833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 29629071 - 29629131
Alignment:
Q  17 aaaacaataacttatattttatcttttgttatagaaataacttttatataagtacttatcat 78  Q
    ||||||||||||| ||||||||||||||| | ||||||||| | || ||||| |||||||||    
T  29629071 aaaacaataactt-tattttatcttttgtcacagaaataacatatacataagcacttatcat 29629131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 32098403 - 32098440
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataag 68  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  32098403 tattttatcttttgttatagaaatagcttatatataag 32098440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 42907365 - 42907286
Alignment:
Q  1 acttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatg 79  Q
    |||||||||||| || ||||||||  ||||| |||||| |||| ||||||||||||| ||| ||| ||||| |||||||||    
T  42907365 acttatagcttaaacgaaaacaatttaactt-tattttttcttctgttatagaaatagcttatatgtaagtgcttatcatg 42907286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 27288608 - 27288564
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||| ||||||||| |||||||| ||||| ||||||    
T  27288608 tattttatcttttattatagaaacaacttttacataagcacttat 27288564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 31461413 - 31461377
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataa 67  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  31461413 tattttatcttttgttatagaaatagcttatatataa 31461377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 32095256 - 32095338
Alignment:
Q  2 cttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    ||||||| |||||||||||||||  |||||| |||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||    
T  32095256 cttatagtttatacaaaaacaatttaactta-attttatcttttgttatagaaataacttatatatgagtgcttat-atgataag 32095338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 16790183 - 16790227
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    
T  16790183 tattttatcttttgttatagaaataacttatatataagcacttat 16790227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 23816024 - 23815972
Alignment:
Q  35 ttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    ||||||||| ||||||||||||||| || |||||| |||||||||||||||||    
T  23816024 ttatcttttattatagaaataacttatacataagtgcttatcatgataagcac 23815972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 31403332 - 31403277
Alignment:
Q  32 attttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    ||||||||||||| ||| |||||| ||| ||||||||| ||||| |||||||||||    
T  31403332 attttatcttttgatatggaaatagcttatatataagtgcttatgatgataagcac 31403277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30956690 - 30956745
Alignment:
Q  1 acttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaata 55  Q
    ||||||||| ||||||||||||||  ||||| |||||||||||||| ||||||||||    
T  30956690 acttatagcctatacaaaaacaatttaactt-tattttatcttttgctatagaaata 30956745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30972502 - 30972557
Alignment:
Q  1 acttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaata 55  Q
    ||||||||| ||||||||||||||  ||||| |||||||||||||| ||||||||||    
T  30972502 acttatagcctatacaaaaacaatttaactt-tattttatcttttgctatagaaata 30972557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 10101571 - 10101599
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  10101571 tattttatcttttgttatagaaataactt 10101599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 10212496 - 10212524
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  10212496 tattttatcttttgttatagaaataactt 10212524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 10357408 - 10357380
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  10357408 tattttatcttttgttatagaaataactt 10357380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 20173983 - 20174027
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||||||||  || ||||| ||||||    
T  20173983 tattttatcttttgttatagaaataactaatacataagcacttat 20174027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 34235171 - 34235227
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    |||||||| ||||| ||| |||||| ||| || |||||| |||||||||||||||||    
T  34235171 tattttatattttgctatggaaatagcttctacataagtgcttatcatgataagcac 34235227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 34638034 - 34638113
Alignment:
Q  7 agcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    ||||||||| ||||||||  |||||  ||||||||||||  |||||||||| ||| ||||||||   |||||||||||||    
T  34638034 agcttatacgaaaacaatttaactttaattttatctttttctatagaaatagcttatatataagcggttatcatgataag 34638113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 35127471 - 35127519
Alignment:
Q  36 tatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    |||||||||||||||||||| | | || ||||| |||||||||||||||    
T  35127471 tatcttttgttatagaaatagcctatacataagcacttatcatgataag 35127519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 36887504 - 36887469
Alignment:
Q  23 ataacttatattttatcttttgttatagaaataactt 59  Q
    |||||||| ||||||||||||||||||||||||||||    
T  36887504 ataactta-attttatcttttgttatagaaataactt 36887469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 54775103 - 54775075
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  54775103 tattttatcttttgttatagaaataactt 54775075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 465954 - 465880
Alignment:
Q  7 agcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatga 80  Q
    ||||||||||||||||||  ||||| ||||||||||||||| ||||||||| ||| ||||||||| ||||||||||    
T  465954 agcttatacaaaaacaatttaactt-tattttatcttttgtcatagaaatagcttatatataagtgcttatcatga 465880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 9202843 - 9202921
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagcaccacacttgtgctataagttgcaaataa 114  Q
    |||||||||||||| || ||||||| ||| |||||||| ||||||||||||||     |||||||||||||||| |||||||||    
T  9202843 tattttatcttttgctacagaaatagcttatatataagcacttatcatgataa-----acacttgtgctataagctgcaaataa 9202921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 7674623 - 7674571
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataa 83  Q
    |||||||||||||| |||||||||| ||| ||||||||| |||||||||||||    
T  7674623 tattttatcttttggtatagaaatagcttatatataagtgcttatcatgataa 7674571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 42569046 - 42569131
Alignment:
Q  3 ttatagcttatacaaaaacaataa--cttatattttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    ||||||||||||| |||||||| |  ||| |||||||||||||| |||||||||| |||||  |||||  |||||||||||||||||    
T  42569046 ttatagcttatacgaaaacaattagactt-tattttatcttttgctatagaaatagctttttcataagcgcttatcatgataagcac 42569131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 40048375 - 40048422
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcat 78  Q
    ||||||||||||||||||||||| ||||| || ||||| |||||||||    
T  40048375 tattttatcttttgttatagaaacaacttatacataagcacttatcat 40048422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 3566382 - 3566466
Alignment:
Q  1 acttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    |||||||||||||||||||| |||  ||||| |||||| ||||| | |||||||||| ||| ||  ||||| ||||||||||||||    
T  3566382 acttatagcttatacaaaaataatttaactt-tattttctctttgggtatagaaatagcttataggtaagtgcttatcatgataag 3566466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 18704133 - 18704174
Alignment:
Q  34 tttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||||||||||||||| || ||||| ||||||    
T  18704133 tttatcttttgttatagaaataacttatacataagaacttat 18704174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 20982230 - 20982285
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    ||||||||| ||||||||||||||| ||| || ||||| |||||| |||||||||||    
T  20982230 tattttatcctttgttatagaaatagcttatacataagcacttat-atgataagcac 20982285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 42573880 - 42573928
Alignment:
Q  37 atcttttgttatagaaataacttttatataagtacttatcatgataagc 85  Q
    ||||||||||||||||||| ||| || |||||  |||||||||||||||    
T  42573880 atcttttgttatagaaatagcttatacataagcgcttatcatgataagc 42573928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 264346 - 264270
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagcaccacacttgtgctataagttgcaaat 112  Q
    |||||||||||||| | |||||||| ||| |||||||| |||||||||||||||     ||||||||||||||| |||||||    
T  264346 tattttatcttttgctttagaaatagcttatatataagcacttatcatgataag-----cacttgtgctataagctgcaaat 264270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 507222 - 507170
Alignment:
Q  5 atagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataa 56  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  507222 atagcttatacaaaaacaatctaactt-tattttatcttttgttatagaaataa 507170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 1810368 - 1810439
Alignment:
Q  2 cttatagcttatacaaaaacaataacttatattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||  |||||||||  || ||||||||||||||||||||||||| |||||  ||||| ||||||    
T  1810368 cttatagcttatatgaaaacaata--ttttattttatcttttgttatagaaatagcttttgcataagcacttat 1810439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 9093621 - 9093704
Alignment:
Q  2 cttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    |||||||||||||| ||||||||  ||||| |||||||||||||| |||||||||| ||| |  |||||  ||||||||||||||    
T  9093621 cttatagcttatacgaaaacaatttaactt-tattttatcttttgatatagaaatagcttatccataagcgcttatcatgataag 9093704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24836263 - 24836338
Alignment:
Q  1 acttatagcttatacaaaaacaata--acttatattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||| |||||| ||||||||   |||| ||||||||||||||||||||||||||||| || |||| |||||||    
T  24836263 acttatagtttatacgaaaacaatttgactt-tattttatcttttgttatagaaataacttatacataaatacttat 24836338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 12631615 - 12631537
Alignment:
Q  1 acttatagcttatacaaaaacaataacttatattttatcttttgttatagaaataacttttatataagtacttatcatgat 81  Q
    ||||| ||||||||  ||||||||  || ||||||||||||| |||||||||||| ||| || ||||| ||||||| ||||    
T  12631615 acttacagcttataggaaaacaat--ctaatattttatctttggttatagaaatagcttatacataagaacttatcgtgat 12631537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 33068656 - 33068693
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataag 68  Q
    ||||||||||||||||||||||||||||| || |||||    
T  33068656 tattttatcttttgttatagaaataacttatacataag 33068693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 33736813 - 33736760
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    |||||||| || ||||||||||||||||| || |||||| || |||||||||||    
T  33736813 tattttatgttatgttatagaaataacttatacataagtgctgatcatgataag 33736760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 4248933 - 4248889
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||||||| |||||| ||| |||||||| ||||||    
T  4248933 tattttatcttttgttattgaaatagcttatatataagcacttat 4248889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 5328949 - 5328921
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  5328949 tattttatcttttgttatagaaataactt 5328921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 9559636 - 9559688
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataa 83  Q
    |||||||||||||| |||||||||||||| || |||||  |||||| ||||||    
T  9559636 tattttatcttttgctatagaaataacttatacataagcgcttatcttgataa 9559688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 11340720 - 11340764
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||||||||||| || ||| |||||||| ||||||    
T  11340720 tattttatcttttgttatagaattatcttatatataagcacttat 11340764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 31670970 - 31671014
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||| ||||||||||||| |||| |||||||| ||||||    
T  31670970 tattttatctattgttatagaaatgacttatatataagcacttat 31671014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 31672045 - 31672017
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  31672045 tattttatcttttgttatagaaataactt 31672017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 6364124 - 6364068
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    ||||||||||||||||||||||||| ||| || |||||| |||||| ||||||||||    
T  6364124 tattttatcttttgttatagaaatagcttatacataagtgcttatcttgataagcac 6364068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 11389498 - 11389445
Alignment:
Q  34 tttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    |||||||||| |||||||||||| || || ||||| ||||||||||||||||||    
T  11389498 tttatctttttttatagaaataatttatacataagcacttatcatgataagcac 11389445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 30024675 - 30024631
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||    
T  30024675 tattttatcttttgttatagaaataacttatgcataagtacttat 30024631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 44249259 - 44249207
Alignment:
Q  33 ttttatcttttgttatagaaataacttttatataagtacttatcatgataagc 85  Q
    |||||||||||||||| |||||||||| || |||| | |||||||||||||||    
T  44249259 ttttatcttttgttattgaaataacttatacataattgcttatcatgataagc 44249207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 3155604 - 3155524
Alignment:
Q  6 tagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataagc 85  Q
    |||||| ||||||||||||  ||||| |||||||||||||| |||||||||| ||| || |||  | |||||||||||||||    
T  3155604 tagcttgtacaaaaacaatttaactt-tattttatcttttgctatagaaatagcttatacatacatgcttatcatgataagc 3155524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 17884066 - 17883990
Alignment:
Q  9 cttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||||||| |||  | || || ||||| |||||||||    
T  17884066 cttatacaaaaacaatttaactt-tattttatcttttgttatagaaatagcttacacatgagcacttaccatgataag 17883990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 2987191 - 2987112
Alignment:
Q  5 atagcttatacaaaaacaa--taacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataa 83  Q
    |||||||||||| |||||   |||||| |||||||| ||||||| |||||||| ||| || |||||| |||||||||||||    
T  2987191 atagcttatacataaacatcttaactt-tattttattttttgttgtagaaatagcttataaataagtgcttatcatgataa 2987112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 42641728 - 42641781
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    |||||||||||||||||| |||||| ||| || ||||  |||||||||||||||    
T  42641728 tattttatcttttgttatggaaatagcttatacataaacacttatcatgataag 42641781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 46176104 - 46176145
Alignment:
Q  34 tttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||||||||||||||| | |||||| ||||||    
T  46176104 tttatcttttgttatagaaataacttatgtataagcacttat 46176145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 23815345 - 23815317
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  23815345 tattttatcttttgttatagaaataactt 23815317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 26520294 - 26520376
Alignment:
Q  2 cttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataa 83  Q
    ||||||||||| || ||||||||  ||||| ||||| ||||||||||||||||| |  || || |||||| |||||||||||||    
T  26520294 cttatagcttacacgaaaacaatttaactt-tatttcatcttttgttatagaaacagtttatacataagtgcttatcatgataa 26520376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 27968112 - 27968076
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataa 67  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  27968112 tattttatcatttgttataaaaataacttttatataa 27968076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 28623264 - 28623220
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||| ||||||||| || ||||| ||||||    
T  28623264 tattttatcttttgttatataaataacttatacataagcacttat 28623220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 35743279 - 35743251
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  35743279 tattttatcttttgttatagaaataactt 35743251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 44007967 - 44008011
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||| ||||| |||| ||| |||||||||||||||    
T  44007967 tattttatcttttggtatagtaatagcttatatataagtacttat 44008011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 47800630 - 47800580
Alignment:
Q  7 agcttatacaaaaacaat--aacttatattttatcttttgttatagaaataa 56  Q
    |||||||||||||||| |  ||||| ||||||||||||||||||||||||||    
T  47800630 agcttatacaaaaacattttaactt-tattttatcttttgttatagaaataa 47800580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 36641850 - 36641806
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||    
T  36641850 tattttatcttttgttatagaaataacttatatataagtaattat 36641806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 37842001 - 37841920
Alignment:
Q  4 tatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    |||||||||||| ||||||||  ||||| ||||||||| |||||||||| |||| ||| || || ||||||||||||||||||    
T  37842001 tatagcttatacgaaaacaatttaactt-tattttatcatttgttataggaatagcttatacatgagtacttatcatgataag 37841920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 51190866 - 51190784
Alignment:
Q  2 cttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataa 83  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||| | || ||||| |||||| ||||||  ||||||||||||    
T  51190866 cttataacttatacaaaaacaatttaactt-tattttatcttttgctttacaaatagcttttaaataagtgtttatcatgataa 51190784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29793788 - 29793711
Alignment:
Q  1 acttatagcttatacaaaaacaa--taacttatattttatcttttgttatagaaataacttttatataagtacttatca 77  Q
    ||||||||||||||| |||||||  |||||| ||| |||||||||||| |||||||| ||| || ||||| ||||||||    
T  29793788 acttatagcttatacgaaaacaacttaactt-tatgttatcttttgttgtagaaatagcttgtacataagcacttatca 29793711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2194424 - 2194477
Alignment:
Q  1 acttatagcttatacaaaaacaataacttatattttatcttttgttatagaaata 55  Q
    |||||||||  ||||||||||| |||||| |||||||||| ||||||||||||||    
T  2194424 acttatagccaatacaaaaacactaactt-tattttatctattgttatagaaata 2194477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 2462970 - 2462905
Alignment:
Q  2 cttatagcttatacaaaaacaataacttatattttatcttttgttatagaaataacttttatataag 68  Q
    ||||| ||||||| |||||||||||||| ||| |||| |||||||||||||||| ||| || |||||    
T  2462970 cttattgcttatataaaaacaataactt-tatcttatattttgttatagaaatagcttatacataag 2462905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 34619445 - 34619496
Alignment:
Q  4 tatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaat 54  Q
    |||||||||||||||||||||  ||| | ||||||||||||||||||||||||    
T  34619445 tatagcttatacaaaaacaatttaacct-tattttatcttttgttatagaaat 34619496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38578533 - 38578478
Alignment:
Q  1 acttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaata 55  Q
    |||||||||||||||||||| |||  ||||| ||| |||||||||||||||||||||    
T  38578533 acttatagcttatacaaaaataatttaactt-tatgttatcttttgttatagaaata 38578478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 4200204 - 4200168
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataa 67  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  4200204 tattttatcttttgttataaaaataacttatatataa 4200168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 4700161 - 4700205
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||||| ||| || |||||| |||||    
T  4700161 tattttatcttttgttatagaaatagcttgtacataagtgcttat 4700205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 7707194 - 7707158
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataa 67  Q
    |||||||||||||||||| |||||||||| |||||||    
T  7707194 tattttatcttttgttatcgaaataacttatatataa 7707158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 9572173 - 9572227
Alignment:
Q  2 cttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaata 55  Q
    |||||||||||||||||| ||||  ||||| |||||||||||||| ||||||||||    
T  9572173 cttatagcttatacaaaagcaatttaactt-tattttatcttttgctatagaaata 9572227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 14737800 - 14737828
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  14737800 tattttatcttttgttatagaaataactt 14737828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 27140460 - 27140432
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  27140460 tattttatcttttgttatagaaataactt 27140432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 49517045 - 49517017
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  49517045 tattttatcttttgttatagaaataactt 49517017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 49557116 - 49557088
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  49557116 tattttatcttttgttatagaaataactt 49557088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 42656490 - 42656436
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagc 85  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||  ||||||||    
T  42656490 tattttatcttttgttatagaaatagcttatatataagtgcttattttgataagc 42656436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 24973919 - 24973875
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||    
T  24973919 tattttatcttttgttatagaaatagcttttacataagcacttat 24973875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 1432062 - 1432099
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataag 68  Q
    ||||||||||||||||||||||||||||| || |||||    
T  1432062 tattttatcttttgttatagaaataacttatacataag 1432099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 6552365 - 6552417
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    |||||||||||||||| |||||||||||| || ||||| |||||| ||||||||    
T  6552365 tattttatcttttgttgtagaaataacttgtacataagcacttat-atgataag 6552417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 5373200 - 5373145
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    ||||||||||||||||||||||||| | | || ||||| ||||| ||||||||||||    
T  5373200 tattttatcttttgttatagaaatagcatatacataagcactta-catgataagcac 5373145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 21853211 - 21853247
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataa 67  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  21853211 tattttatcttttgtaatagaaataacttatatataa 21853247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 34083590 - 34083644
Alignment:
Q  2 cttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaata 55  Q
    ||||||||||||||| |||||||  ||||| |||||||||||||| ||||||||||    
T  34083590 cttatagcttatacacaaacaatttaactt-tattttatcttttgctatagaaata 34083644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 39591562 - 39591590
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  39591562 tattttatcttttgttatagaaataactt 39591590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 46213778 - 46213734
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||| |||||||||||||||| |||||| ||||| ||||||    
T  46213778 tattttatattttgttatagaaatagcttttacataagcacttat 46213734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 47510086 - 47510030
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    ||||||||||| ||||||| ||||  ||| ||||||||  |||||||||||||||||    
T  47510086 tattttatcttatgttataaaaattgcttatatataagcccttatcatgataagcac 47510030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 10114494 - 10114413
Alignment:
Q  2 cttatagcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataa 83  Q
    |||||||||||||| ||||||||  |||||||  ||||||||||| |||||||||| ||| || ||||| ||||||||| ||||    
T  10114494 cttatagcttataccaaaacaattcaacttat--tttatcttttgctatagaaatagcttatacataagcacttatcatcataa 10114413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 42597376 - 42597332
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||||| ||| || ||||||||||||    
T  42597376 tattttatcttttgttatagaaatagcttatacataagtacttat 42597332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 26215471 - 26215417
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagc 85  Q
    ||||||||||||||||||||||||| ||| || |||||  |||||||| ||||||    
T  26215471 tattttatcttttgttatagaaatagcttatacataagcgcttatcattataagc 26215417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 40280300 - 40280353
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagc 85  Q
    |||||||||||||||| |||||||||||| |||||| | |||||| |||||||||    
T  40280300 tattttatcttttgttgtagaaataacttatatataggcacttat-atgataagc 40280353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 3945249 - 3945204
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatc 76  Q
    |||||||||||||||||| |||||||||| |||||||  |||||||    
T  3945249 tattttatcttttgttattgaaataacttatatataaacacttatc 3945204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 12361166 - 12361125
Alignment:
Q  32 attttatcttttgttatagaaataacttttatataagtactt 73  Q
    |||||||||||  ||||||||||||||| |||||||||||||    
T  12361166 attttatctttatttatagaaataacttatatataagtactt 12361125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 29699229 - 29699192
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataag 68  Q
    ||||||||||||||||||||||||||||| || |||||    
T  29699229 tattttatcttttgttatagaaataacttgtacataag 29699192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 11188250 - 11188294
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||| ||||| || ||||| ||||||    
T  11188250 tattttatcttttgttatagaaacaacttatacataagcacttat 11188294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 14482177 - 14482122
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataagcac 87  Q
    |||||||||||||||||||||||||  || || ||||| |||||| |||||||||||    
T  14482177 tattttatcttttgttatagaaatagtttatacataagcacttat-atgataagcac 14482122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 26820174 - 26820146
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  26820174 tattttatcttttgttatagaaataactt 26820146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 27492928 - 27492880
Alignment:
Q  37 atcttttgttatagaaataacttttatataagtacttatcatgataagc 85  Q
    |||||||| |||||||||| ||| || |||||| |||||||||||||||    
T  27492928 atcttttgctatagaaataccttatacataagtgcttatcatgataagc 27492880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 34563225 - 34563181
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||| ||||| ||||||||||||| |||||||| ||||||    
T  34563225 tattttatcctttgtcatagaaataacttatatataagcacttat 34563181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 37444485 - 37444563
Alignment:
Q  7 agcttatacaaaaacaat--aacttatattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    ||||||||| ||||||||  ||||| || ||||||||||||||||| |||| ||| || |||||  ||||||||||||||    
T  37444485 agcttatacgaaaacaatttaactt-tactttatcttttgttatagtaatagcttatacataagcgcttatcatgataag 37444563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 40728513 - 40728541
Alignment:
Q  31 tattttatcttttgttatagaaataactt 59  Q
    |||||||||||||||||||||||||||||    
T  40728513 tattttatcttttgttatagaaataactt 40728541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 27551 - 27499
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttatcatgataag 84  Q
    ||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||    
T  27551 tattttatcttctgttatagaaataacttatacataagcactta-catgataag 27499  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 1169 - 1213
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||||| ||| || ||||| ||||||    
T  1169 tattttatcttttgttatagaaatagcttatacataagcacttat 1213  T

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Target: scaffold0549 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 1819 - 1863
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||||||||||| || ||| |||||||| ||||||    
T  1819 tattttatcttttgttatagaattatcttatatataagcacttat 1863  T

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Target: scaffold0549; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 3909 - 3953
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||||||||||| || ||| |||||||| ||||||    
T  3909 tattttatcttttgttatagaattatcttatatataagcacttat 3953  T

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Target: scaffold0275 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 2806 - 2762
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    ||||||||||||||||||||||||| ||| || ||||| ||||||    
T  2806 tattttatcttttgttatagaaatagcttatacataagcacttat 2762  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 42592 - 42548
Alignment:
Q  31 tattttatcttttgttatagaaataacttttatataagtacttat 75  Q
    |||||||||||||||||||||||| |||| || ||||| ||||||    
T  42592 tattttatcttttgttatagaaatgacttatacataagcacttat 42548  T

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