View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_64 (Length: 236)
Name: NF18173_high_64
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_64 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 22698898 - 22698679
Alignment:
| Q |
1 |
tattatgtgggataggacttatgaccatgccatatgcagtaaaagaaggagggttgttgagccttacattactgctactgttagctgtcatttgttgcta |
100 |
Q |
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| T |
22698898 |
tattatgtgggataggacttatgaccatgccatatgcagtaaaagaaggagggttgttgagccttacattactgctactgtttgctgtcatttgttgcta |
22698799 |
T |
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| Q |
101 |
tactggaattttattgatgaggtgtttacaaagctaccctggactccacagttatccggatattggccaagctgcttttggagctgctggtcgcttcggg |
200 |
Q |
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| T |
22698798 |
tactggaattttattgatgaggtgtttacaaagctaccctggactccacagttatccggatattggccaagctgcttttggaactgctggtcgcttcggg |
22698699 |
T |
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| Q |
201 |
atcgcggtgagtacaataat |
220 |
Q |
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|||||||||||||| ||||| |
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| T |
22698698 |
atcgcggtgagtaccataat |
22698679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 22688189 - 22687975
Alignment:
| Q |
4 |
tatgtgggataggacttatgaccatgccatatgcagtaaaagaaggagggttgttgagccttacattactgctactgttagctgtcatttgttgctatac |
103 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||||||||||| |
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| T |
22688189 |
tatgtgggataggacttatgactatgccatatgcagtaaaagaaggagggtttttgagccttgcattactgttactgtttgctgtcatttgttgctatac |
22688090 |
T |
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| Q |
104 |
tggaattttattgatgaggtgtttacaaagctaccctggactccacagttatccggatattggccaagctgcttttggagctgctggtcgcttcgggatc |
203 |
Q |
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| T |
22688089 |
tggaattttattgatgagatgtttacaaagctaccctggactcgacacttatccggatattggccaagctgcttttggatacgccggtcgcttggggatc |
22687990 |
T |
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| Q |
204 |
gcggtgagtacaata |
218 |
Q |
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| T |
22687989 |
gcggtgagtacaata |
22687975 |
T |
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