View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_66 (Length: 236)
Name: NF18173_high_66
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_66 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 32810502 - 32810716
Alignment:
| Q |
1 |
gcatgcagcttcttagcttgtaacaatacatgcatcaga-ttccttatttcagaataaagtgtcatggatacatnnnnnnnnnnnnncccttcacaggtg |
99 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||| |
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| T |
32810502 |
gcatgcaacttcttagcttgtaacaaaacatgcatcagaattccttgtttcagaataaagtgtcatggatacataaaaaactaaaaactcttcacaggtg |
32810601 |
T |
|
| Q |
100 |
agggcatatatcaatcagatagcacagcaaattaatcaatcaaatataaaaccataatacccgcattgatggcatttctctcccttggttggatcatata |
199 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32810602 |
agggcatatatatatcagatagcacatcaaattaatcaatcaaatataaaaccataatacccgcattgatggcatttctctcccttggttggatcatata |
32810701 |
T |
|
| Q |
200 |
tatggtccccatcct |
214 |
Q |
| |
|
||||||||||||||| |
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|
| T |
32810702 |
tatggtccccatcct |
32810716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 24238980 - 24238832
Alignment:
| Q |
1 |
gcatgcagcttcttagcttgtaacaatacatgcatcagattccttatttcagaataaagtgtcatggatacatnnnnnnnnnnnnncccttcacaggtga |
100 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||||| |
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| T |
24238980 |
gcatgcagcttcttagcttttaacaatacatgcatcaaattccttttttcagaataaagtgtcatggatacataaaaaactaaaaactcttcacaggtga |
24238881 |
T |
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| Q |
101 |
gggcatatatcaatcagatagcacagcaaattaatcaatcaaatataaa |
149 |
Q |
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|||||||| | ||||||||||||| ||||||||||||||||| ||||| |
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| T |
24238880 |
gggcatatgtatatcagatagcacaacaaattaatcaatcaaacataaa |
24238832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 19886311 - 19886098
Alignment:
| Q |
1 |
gcatgcagcttcttagcttgtaacaatacatgcatcaga-ttccttatttcagaataaagtgtcatggatacatnnnnnnnnnnnnncccttcacaggtg |
99 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
19886311 |
gcatgcaacttcttagcttgtaacaaaacatgcatcagaattccttgtttcagaataaagtgtcatggatacataaaaaactaaaaactcttcacaggtg |
19886212 |
T |
|
| Q |
100 |
agggcatatatcaatcagatagcacagcaaattaatcaatcaaatataaaaccataatacccgcattgatggcatttctctcccttggttggatcatata |
199 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19886211 |
agggcatatatatatcagatagcacaacaaattaatcaatcaaatataaaaccataatacccgcattgatggcatttctctcccttggttggatcatata |
19886112 |
T |
|
| Q |
200 |
tatggtccccatcct |
214 |
Q |
| |
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|||||||||||||| |
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|
| T |
19886111 |
-atggtccccatcct |
19886098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 11494723 - 11494824
Alignment:
| Q |
113 |
atcagatagcacagcaaattaatcaatcaaatataaaaccataatacccgcattgatggcatttctctcccttggttggatcatatatatggtccccatc |
212 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
11494723 |
atcagatagcacagcaaattaatcaatcaaatataaaaccataatacccgcattggtggcatttctctcccttggttggatcatatgtatggtccccatc |
11494822 |
T |
|
| Q |
213 |
ct |
214 |
Q |
| |
|
|| |
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|
| T |
11494823 |
ct |
11494824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11494579 - 11494651
Alignment:
| Q |
1 |
gcatgcagcttcttagcttgtaacaatacatgcatcagattccttatttcagaataaagtgtcatggatacat |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
11494579 |
gcatgcagcttcttagcttgtaacaatacatgtatcagattccttgttttagaataaagtgtcatggatacat |
11494651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 34201029 - 34200943
Alignment:
| Q |
134 |
atcaatcaaatataaaaccataatacccgcattgatggcatttctctcccttggttggatcatatatatggtccccatcctcatcat |
220 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34201029 |
atcaatcaaatataaaaccataatacccgcattgatgacatttctctcccttggttggatcatatatatggtccccatcctcatcat |
34200943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34201137 - 34201022
Alignment:
| Q |
1 |
gcatgcagcttcttagcttgtaacaatacatgcatcagattccttatttcagaataaagtgtcatggatacatnnnnnnnnnnnnncccttcacaggtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34201137 |
gcatgcagcttcttagcttgtaacaatacatgcatcagattccttgtttcagaataaagtgtcatggatacataaaaaactaaaaacccttcacaggtga |
34201038 |
T |
|
| Q |
101 |
gggcatatatcaatca |
116 |
Q |
| |
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|||||||||||||||| |
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|
| T |
34201037 |
gggcatatatcaatca |
34201022 |
T |
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