View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_69 (Length: 230)
Name: NF18173_high_69
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_69 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 29506882 - 29506669
Alignment:
| Q |
1 |
tttggcaagatcagtgtagataaggagtgccctaagttatttgcttgggccaatagatgcatggagattgagagtgtttccaagtcactccctgatcagg |
100 |
Q |
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| T |
29506882 |
tttggcaagatcagtgtagataaggagtgccctaagttctttgcttgggccaatagatgcatggagattgagagtgtttccaagtcactccctgatcagg |
29506783 |
T |
|
| Q |
101 |
atcagatccatgatttgattgtgcagatcaagaagaagtctggccttgagtaggttggagatgttaggttaagtttatgtttggatgagtgatgagtttg |
200 |
Q |
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| T |
29506782 |
atcagatccatgatttgattgtgcagatcaagaagaaggctggccttgagtaggttggagatgttaggttaagtttatgtttggatgagtgatgagtttg |
29506683 |
T |
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| Q |
201 |
gcgaaaacacaatg |
214 |
Q |
| |
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|||||||||||||| |
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| T |
29506682 |
gcgaaaacacaatg |
29506669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 29510080 - 29509875
Alignment:
| Q |
1 |
tttggcaagatcagtgtagataaggagtgccctaagttatttgcttgggccaatagatgcatggagattgagagtgtttccaagtcactccctgatcagg |
100 |
Q |
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| T |
29510080 |
tttggcaacatcaatgtagagaaggaatgccctaagttcattgcttgggccaagagatgcatgcaggttgagagtatttccaagtcactccctgatcaag |
29509981 |
T |
|
| Q |
101 |
atcagatccatgatttgattgtgcagatcaagaagaagtctggccttgagtaggttggagatgttaggttaagtttatgtttggatgagtgatgagtttg |
200 |
Q |
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| T |
29509980 |
ataaggtgtatggcttcattgtggagatcaggaagaagtttggccttgagtaggttggagatgttaggttaagtttatgtttagatgtgtggtgagtttg |
29509881 |
T |
|
| Q |
201 |
gcgaaa |
206 |
Q |
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|||||| |
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| T |
29509880 |
gcgaaa |
29509875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 29516968 - 29516871
Alignment:
| Q |
1 |
tttggcaagatcagtgtagataaggagtgccctaagttatttgcttgggccaatagatgcatggagattgagagtgtttccaagtcactccctgatca |
98 |
Q |
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|||||||| |||| |||||| ||||| ||||||||||| ||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||| |
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| T |
29516968 |
tttggcaacatcaatgtagagaaggaatgccctaagttcattgcttgggccaagagatgcatgcaggttgagagtatttccaagtcactccctgatca |
29516871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 29534642 - 29534521
Alignment:
| Q |
1 |
tttggcaagatcagtgtagataaggagtgccctaagttatttgcttgggccaatagatgcatggagattgagagtgtttccaagtcactccctgatcagg |
100 |
Q |
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|||||||| |||||| |||| ||||| ||||||||||| ||||||||||||| | ||| ||| |||||||||||||||| ||||| || |||||||| | |
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| T |
29534642 |
tttggcaacatcagtctagaaaaggaatgccctaagttcattgcttgggccaagaaatgtatgcagattgagagtgtttcaaagtctcttcctgatcaag |
29534543 |
T |
|
| Q |
101 |
atcagatccatgatttgattgt |
122 |
Q |
| |
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|| || ||||||| || ||||| |
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| T |
29534542 |
ataaggtccatgacttaattgt |
29534521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 29544193 - 29544110
Alignment:
| Q |
25 |
gagtgccctaagttatttgcttgggccaatagatgcatggagattgagagtgtttccaagtcactccctgatcaggatcagatc |
108 |
Q |
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||||| |||||||| |||||||||| || ||||||||| ||||||| |||||||||||||| || || || |||||| ||||| |
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| T |
29544193 |
gagtgtcctaagttcattgcttgggctaagagatgcatgcagattgaaagtgtttccaagtctcttccagaccaggataagatc |
29544110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 29540558 - 29540497
Alignment:
| Q |
25 |
gagtgccctaagttatttgcttgggccaatagatgcatggagattgagagtgtttccaagtc |
86 |
Q |
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|||||||||||||| |||| ||||| ||| | |||||| |||||||||||||||||||||| |
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| T |
29540558 |
gagtgccctaagttcattgcatgggctaatcggtgcatgcagattgagagtgtttccaagtc |
29540497 |
T |
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