View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_76 (Length: 222)
Name: NF18173_high_76
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_76 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 44707145 - 44706935
Alignment:
| Q |
1 |
ctgcttagtattaagttggtcatatgcacaaacatttgatatagcaaacactatatcctatatggattatcaaaatagtctatctagactaattacgtgt |
100 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44707145 |
ctgcgtagtattaagttggtcttatgcacaaacatttgatatagcaaacactatatcctatatggattatcaaaatagtctatctagactaattacgtgt |
44707046 |
T |
|
| Q |
101 |
acacctagatcattccatttacctcattaactattggatgttagtcatttttatttttataaatgtacctctatatggattcaaagtactctatcaagac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
44707045 |
acacctagatcattccatttacctcattaactattggatgttagtcatttttatttttataaatgtacctctacatgcattcaaagtactctatcaagac |
44706946 |
T |
|
| Q |
201 |
caattacctat |
211 |
Q |
| |
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||||||||||| |
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| T |
44706945 |
caattacctat |
44706935 |
T |
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