View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_high_79 (Length: 215)
Name: NF18173_high_79
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_high_79 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 22070973 - 22071159
Alignment:
| Q |
1 |
ttttctctttcttgcattttgtattattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattca |
100 |
Q |
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| T |
22070973 |
ttttctctttcttgcattttgtattattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattca |
22071072 |
T |
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| Q |
101 |
tgctaatatatgtggagaaaataatacaacttaaatatggccctaatgcatgcacatcagtgcatatatttgtttgttaggcttccaaaa |
190 |
Q |
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| T |
22071073 |
tgctaatatatgtggagaa---aatacaacttaaatatggccctaatgcatgcacatcagtgcatatatttgtttgttaggcttccaaaa |
22071159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 660404 - 660241
Alignment:
| Q |
1 |
ttttctctttcttgcattttgtat--tattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggatt |
98 |
Q |
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| T |
660404 |
ttttctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactagtttttcatttatcttggatt |
660305 |
T |
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| Q |
99 |
catgctaatatatgtggagaaaataatacaacttaaatatggccctaatgca---tgcacatcagtg |
162 |
Q |
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| T |
660304 |
catgctaatatatgtggagaa---aatacaactcaaataaagccctaatgcacattgcacatcagtg |
660241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 22065017 - 22065181
Alignment:
| Q |
5 |
ctctttcttgcattttgtattattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatgct |
104 |
Q |
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| T |
22065017 |
ctctttcttgcattttgtaatatttaagcatagtaaggaaattattcgatttcaactcaaatttcttgaactagtttttagttgatcttggattcatgtt |
22065116 |
T |
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| Q |
105 |
aatatatgtggagaaaataatacaacttaaatatggccctaatgcatgcacatcagtgcatatatttgtttg |
176 |
Q |
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| T |
22065117 |
tacatatgtggagaa---aatacaacttaaatatgtcctta----atgcacatcagtgcatctatttgtttg |
22065181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 168
Target Start/End: Original strand, 22082314 - 22082434
Alignment:
| Q |
49 |
tttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatg----ctaatatatgtggagaaaataatacaacttaaatatggccct |
144 |
Q |
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| T |
22082314 |
tttgatttcaactcaaattttttgtactggtttttaattgatctatgattcatatatactaatatatgtggagaaaata---caacttaaatatggccgt |
22082410 |
T |
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| Q |
145 |
aatgcatgcacatcagtgcatata |
168 |
Q |
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| T |
22082411 |
aatgcatatcgatcagtgcatata |
22082434 |
T |
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