View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_1 (Length: 900)
Name: NF18173_low_1
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 829; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 829; E-Value: 0
Query Start/End: Original strand, 26 - 878
Target Start/End: Original strand, 19911362 - 19912214
Alignment:
| Q |
26 |
gtcttcttcatcactcaaagtataccttgatccttccaatcccatctccctatcagtctcctccagcaagtccattagtgacatcatcattggagcccct |
125 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911362 |
gtcttcttcatcactcaaagtataccttgatccttccaatcccatctccctatcagtctcctccagcaagtccattagtgacatcatcattggagcccct |
19911461 |
T |
|
| Q |
126 |
tctgaagtctccacctctgttgctgcagcggcttctgccgcttcctgcgctgccactgcctcccttgctgaaagtgccctcactgtcgctggtttcttgt |
225 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911462 |
tctgaagtctccacctctgttgctgcagcagcttctgccgcttcctgcgctgccactgcctcccttgctgaaagtgccctcactgtcgctggtttcttgt |
19911561 |
T |
|
| Q |
226 |
tgtcatcatcgtcgggataatcctcatcgaagttgtctctaaaagtcactacacgtcctcggtgaaacggctctgatgacacattggtggaatttcttcg |
325 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911562 |
tgtcatcatcgtcgggatcatcctcatcgaagttgtctctaaaagtcactacacgtcctcggtgaaacggctctgatgacacattggtggaatttcttcg |
19911661 |
T |
|
| Q |
326 |
tgagagttgcggccggagatttcctccgccagaggagttttctggtgattcgaccgagagacgtgtggagatgcggcgagtgaactgtggtctagtggcc |
425 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911662 |
tgagagttgcgaccggagatttcctccgccagaggagttttctggtgattcgaccgagagacgtgtggagatgcggcgagtgaactgtggtctagtggcc |
19911761 |
T |
|
| Q |
426 |
ggaggattggactcctccgatgggtcaaggtcgtccccttggtgagtcatggattgggtggttgacatgtctgagtcatcgtggtgagtttggattcgga |
525 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911762 |
ggaggattggactcctccgatgagtcagggtcgtccccttggtgagtcatggattgggtggttgacatgtctgagtcatcgtggtgagtttggattcgga |
19911861 |
T |
|
| Q |
526 |
ctgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatatctgaagttggaatatgaatcgttgatgtccaagtagagcc |
625 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19911862 |
ctgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatatctgaagttggaatatgaatcgttgatgtccaagcagagcc |
19911961 |
T |
|
| Q |
626 |
agtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaaatgaaactgtgagctaactatttgagaaccatagtctttc |
725 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911962 |
agtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaaatgaaactgtgagctaactatttgagaaccatagtctttc |
19912061 |
T |
|
| Q |
726 |
ctcgacaatgtaagaggacaatacacatatgtcatctcatctaaacactagcattttgatttctcatagaccaatctatactaacataatttttcattaa |
825 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19912062 |
ctcgacaatgtaagaggacaatacacatatgtcatctcatctaaacactagcattttgatttctcatagaccaatctatactaacataatttttcattaa |
19912161 |
T |
|
| Q |
826 |
aaacaaaacaatgtaatcgaaaagatggtgttattacaataatatgttgttac |
878 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19912162 |
aaacaaaacaatgtaatcgaaaagatggtgttattacaataatatgttgttac |
19912214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 486 - 690
Target Start/End: Complemental strand, 29404987 - 29404786
Alignment:
| Q |
486 |
gttgacatgtctgagtcatcgtggtgagtttggattcggactgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatat |
585 |
Q |
| |
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||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| || | |
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| T |
29404987 |
gttgacatgtctgagtc---gtaatgagtttggactcgaactgagttgcgacgaccgaattgtgaaaagcttctgctgtttggattttggatagggatgt |
29404891 |
T |
|
| Q |
586 |
ctgaagttggaatatgaatcgttgatgtccaagtagagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaa |
685 |
Q |
| |
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| || |||||||| |||| | ||||||||||| |||||||| || || || |||| |||||| || || |||||||||||||||||| |||| ||||| |
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| T |
29404890 |
cggatgttggaatgggaattgatgatgtccaagcagagccagcacgctttagccgaagcttgtctttaaaggctttccaagatcttccatatcaatgaaa |
29404791 |
T |
|
| Q |
686 |
atgaa |
690 |
Q |
| |
|
||||| |
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|
| T |
29404790 |
atgaa |
29404786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 29405431 - 29405372
Alignment:
| Q |
27 |
tcttcttcatcactcaaagtataccttgatccttccaatcccatctccctatcagtctcc |
86 |
Q |
| |
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||||| |||||||| || |||||||||| |||||||| |||||||| |||||||||||| |
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|
| T |
29405431 |
tcttcctcatcacttaatatataccttgacccttccaaccccatctctctatcagtctcc |
29405372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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