View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_10 (Length: 551)
Name: NF18173_low_10
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 15885985 - 15885466
Alignment:
| Q |
19 |
gggtctccttgccttaaccctctaccagaaataaaaggaacaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcataatcc |
118 |
Q |
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| T |
15885985 |
gggtctccttgccttaaccctctaccaggaataaaaggtacaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcataatcc |
15885886 |
T |
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| Q |
119 |
atttgttctattgatgagagaaactcatttccatcataacccctttgagataattcaagtcaattatgtcctatgtcttgctaatatcaagcttcaaaac |
218 |
Q |
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| T |
15885885 |
att-gttctattgatgagaaaaactcatttccatcataacccctttgagataattcaagtcaattatgtccgatgtcttgctaatatcaagcttcaaaac |
15885787 |
T |
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| Q |
219 |
aacatcgccatattttcctctaacttttacatagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgtttgt |
318 |
Q |
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| T |
15885786 |
aacatcgccatattttcctctaacttttacatagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgttttt |
15885687 |
T |
|
| Q |
319 |
catgttgacggttgatgggaaaatacatgtcaaaagccaaccacaccattgattacaaatttcatctccatatctcgaccaattgttttgaaagaatctt |
418 |
Q |
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| T |
15885686 |
catgttgacggttgatgggaaaatacatgtcaaaagccaaccacaccattgattacaaatttcatctccatatctcgaccaattgttttgaaagaatctt |
15885587 |
T |
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| Q |
419 |
ggatcgaatccatcctgtccaaggcatttatctggtttcatagagaatagaacttccttgaattcttaaatcacaaaacatgctgataatgtgttttgtt |
518 |
Q |
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| T |
15885586 |
ggatcgaatccatcctgtccaaggcatttatctggtttcatagagaatagaacttccttgaattcttaaatcacaaaacatgctgataatgtgttttgtt |
15885487 |
T |
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| Q |
519 |
gtaactttaatattttacctt |
539 |
Q |
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| T |
15885486 |
gtaactttaatattttacctt |
15885466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 28959059 - 28958926
Alignment:
| Q |
248 |
catagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgtttgtcatgttgacggttgatgggaaaatacatg |
347 |
Q |
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| T |
28959059 |
catagagcaataggtcactaatctttcatagaaactttggactcacctttttggattagggatatgtttgtcatatttaaggttgatgggaaagtaaatg |
28958960 |
T |
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| Q |
348 |
tcaaaagccaaccacaccattgattacaaatttc |
381 |
Q |
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| T |
28958959 |
ttgaaagccaaccgcaatattgattaaaaatttc |
28958926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 8942357 - 8942306
Alignment:
| Q |
97 |
gtttcaacacacatcataatccatttgttctattgatgagagaaactcattt |
148 |
Q |
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| T |
8942357 |
gtttctacacacatcatgatccacttgatctattgatgagataaactcattt |
8942306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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