View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_12 (Length: 504)
Name: NF18173_low_12
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_12 |
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| [»] scaffold0313 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 13581105 - 13581599
Alignment:
| Q |
1 |
tctcttatggaaatccttagtattgtcaatagcttcaataatctaaacctcaacgcctcagcaaatatagccaacaaaacttactacaagggaatttgga |
100 |
Q |
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| T |
13581105 |
tctcttatggaaatccttagtattgtcaatagcttcaataatctaaacctcaacgcctcagtaaatatagccaacaaaacttactacaagggaatttgga |
13581204 |
T |
|
| Q |
101 |
taagcagcagatttggctcaaatggaaactagagaggctccaactcaaggggttggagggaggcagaggtagaagtaagtcctctaaactaacatgacaa |
200 |
Q |
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| T |
13581205 |
taagcagcaaatttggctcaaatggaaactagagaggctccaactcaaggggttggagggagacagaggtagaagtaagtcctctaaactaacatgacaa |
13581304 |
T |
|
| Q |
201 |
gtatgctcaaagactagtcatacaacaatgcaatttttcaataggtttgacaaaacctactcagagccaaaccactaggcaaatgatgataaactagcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13581305 |
gtatgctcaaagactagtcatacaacaatgcaatttttcaataggtttgacaaaacctactcagagccaaaccactaggcaaatgatgataaactagcag |
13581404 |
T |
|
| Q |
301 |
cacaaaatgtctttctaacatcccaaggaattgatcaagattatgactggtactttgacagtggtacatgcaacatgtgacacaccaaactgacaaattt |
400 |
Q |
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| T |
13581405 |
cacaaaatgtctttctaacatcacaaggaattgatcaagattatgactggtactttgacagtggtacatgcaacatgtgacacaccaaactgacaaattt |
13581504 |
T |
|
| Q |
401 |
caagatctataaaaacattatggtaagaattctcttatggttagaattgttggaacaaaatgtgtttaacaatgcttcttttaaattttgatgat |
495 |
Q |
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| T |
13581505 |
caagatctataaaaacattatggtaagaattctcttatggttagaattgttggagcaaaatgtgtttaacaatgcttcttttaaattttgatgat |
13581599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 9625 - 9552
Alignment:
| Q |
336 |
caagattatgactggtactttgacagtggtacatgcaa-catgtgacacaccaaactgacaaatttcaagatct |
408 |
Q |
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| T |
9625 |
caagattatgagtggtattttgacagtggagccagcaatcatgttacacaccaaactgatagatttcaagatct |
9552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 34769212 - 34769139
Alignment:
| Q |
336 |
caagattatgactggtactttgacagtggtacatgcaa-catgtgacacaccaaactgacaaatttcaagatct |
408 |
Q |
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| T |
34769212 |
caagattatgagtggtattttgacagtggagccagcaatcatgttacacaccaaactgatagatttcaagatct |
34769139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Original strand, 12409560 - 12409593
Alignment:
| Q |
448 |
tgttggaacaaaatgtgtttaacaatgcttcttt |
481 |
Q |
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| T |
12409560 |
tgttggaacaaaatgtgtttaacaatgtttcttt |
12409593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 473
Target Start/End: Original strand, 39419348 - 39419376
Alignment:
| Q |
445 |
aattgttggaacaaaatgtgtttaacaat |
473 |
Q |
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| T |
39419348 |
aattgttggaacaaaatgtgtttaacaat |
39419376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 473
Target Start/End: Original strand, 31967646 - 31967674
Alignment:
| Q |
445 |
aattgttggaacaaaatgtgtttaacaat |
473 |
Q |
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| T |
31967646 |
aattgttggaacaaaatgtgtttaacaat |
31967674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 473
Target Start/End: Original strand, 34321502 - 34321530
Alignment:
| Q |
445 |
aattgttggaacaaaatgtgtttaacaat |
473 |
Q |
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| T |
34321502 |
aattgttggaacaaaatgtgtttaacaat |
34321530 |
T |
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