View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18173_low_13 (Length: 485)

Name: NF18173_low_13
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18173_low_13
NF18173_low_13
[»] chr3 (39 HSPs)
chr3 (9-459)||(8362565-8363015)
chr3 (342-452)||(29127914-29128024)
chr3 (342-449)||(35315954-35316061)
chr3 (351-452)||(30767258-30767359)
chr3 (346-453)||(49198345-49198452)
chr3 (339-425)||(4638176-4638262)
chr3 (342-452)||(34662321-34662431)
chr3 (360-426)||(43330752-43330818)
chr3 (384-453)||(29135907-29135976)
chr3 (384-453)||(45877448-45877517)
chr3 (342-411)||(47749107-47749176)
chr3 (342-453)||(28572213-28572324)
chr3 (342-405)||(47471873-47471936)
chr3 (342-423)||(3507535-3507616)
chr3 (342-451)||(7650223-7650332)
chr3 (344-453)||(45402355-45402464)
chr3 (351-404)||(49543562-49543615)
chr3 (342-411)||(54261262-54261331)
chr3 (372-452)||(2030442-2030521)
chr3 (342-450)||(7310705-7310813)
chr3 (365-421)||(23511593-23511649)
chr3 (342-453)||(3136696-3136806)
chr3 (342-453)||(7328838-7328948)
chr3 (365-423)||(7648764-7648822)
chr3 (342-404)||(15320229-15320291)
chr3 (365-423)||(26043836-26043894)
chr3 (365-415)||(32873574-32873624)
chr3 (349-423)||(55069688-55069762)
chr3 (360-425)||(2668083-2668148)
chr3 (349-426)||(24506657-24506734)
chr3 (383-452)||(33688946-33689015)
chr3 (342-411)||(49021205-49021274)
chr3 (349-426)||(50405612-50405689)
chr3 (352-452)||(8164548-8164648)
chr3 (342-426)||(25294981-25295065)
chr3 (342-454)||(29762157-29762269)
chr3 (384-452)||(33251657-33251725)
chr3 (342-426)||(35998573-35998657)
chr3 (342-426)||(47219165-47219249)
[»] chr1 (32 HSPs)
chr1 (342-453)||(43959823-43959934)
chr1 (342-449)||(18649354-18649461)
chr1 (345-449)||(10336515-10336619)
chr1 (342-454)||(26660132-26660243)
chr1 (342-453)||(50503363-50503474)
chr1 (342-450)||(32142848-32142956)
chr1 (342-450)||(32150924-32151032)
chr1 (384-453)||(33004059-33004128)
chr1 (384-453)||(48798114-48798183)
chr1 (384-453)||(49078109-49078178)
chr1 (342-454)||(5855516-5855628)
chr1 (342-450)||(26325810-26325918)
chr1 (342-453)||(8763986-8764097)
chr1 (352-411)||(12036756-12036815)
chr1 (342-452)||(10172973-10173083)
chr1 (346-448)||(42710144-42710246)
chr1 (365-454)||(10422782-10422871)
chr1 (342-454)||(9659181-9659292)
chr1 (342-450)||(12744525-12744633)
chr1 (342-450)||(12755515-12755623)
chr1 (384-451)||(28324624-28324691)
chr1 (342-453)||(41663858-41663969)
chr1 (360-426)||(9853297-9853363)
chr1 (390-448)||(14357755-14357813)
chr1 (368-426)||(31734310-31734368)
chr1 (349-423)||(50094929-50095003)
chr1 (350-423)||(16956491-16956564)
chr1 (342-423)||(17642006-17642087)
chr1 (384-425)||(19195389-19195430)
chr1 (342-415)||(34719809-34719882)
chr1 (349-405)||(35211181-35211237)
chr1 (342-426)||(38791612-38791696)
[»] chr6 (19 HSPs)
chr6 (342-453)||(5253224-5253335)
chr6 (342-454)||(13036005-13036117)
chr6 (342-453)||(8932659-8932770)
chr6 (342-453)||(8944125-8944236)
chr6 (365-453)||(12606428-12606516)
chr6 (342-423)||(30410473-30410554)
chr6 (386-430)||(11142624-11142668)
chr6 (342-453)||(21898646-21898757)
chr6 (365-451)||(29333163-29333248)
chr6 (349-423)||(32157175-32157249)
chr6 (342-423)||(8938739-8938820)
chr6 (342-411)||(9633626-9633695)
chr6 (342-423)||(30788854-30788935)
chr6 (342-454)||(14107359-14107471)
chr6 (352-451)||(9179747-9179846)
chr6 (342-423)||(8149798-8149879)
chr6 (342-415)||(8611975-8612048)
chr6 (342-423)||(34954620-34954701)
chr6 (384-452)||(9147300-9147368)
[»] chr2 (32 HSPs)
chr2 (342-423)||(33005775-33005856)
chr2 (342-450)||(3811692-3811800)
chr2 (342-426)||(9360749-9360833)
chr2 (342-454)||(12864217-12864329)
chr2 (342-450)||(28616380-28616488)
chr2 (342-453)||(41220629-41220740)
chr2 (342-405)||(44945635-44945698)
chr2 (360-453)||(331495-331588)
chr2 (384-453)||(6358194-6358263)
chr2 (342-423)||(34346288-34346369)
chr2 (357-453)||(7787050-7787146)
chr2 (342-454)||(18902531-18902643)
chr2 (342-449)||(8410129-8410236)
chr2 (342-453)||(12455304-12455415)
chr2 (342-405)||(21641992-21642055)
chr2 (342-423)||(7747298-7747379)
chr2 (342-411)||(10823096-10823165)
chr2 (342-423)||(16325619-16325700)
chr2 (342-411)||(38005438-38005507)
chr2 (351-423)||(10026626-10026698)
chr2 (342-454)||(14169610-14169722)
chr2 (351-426)||(10046487-10046561)
chr2 (386-448)||(25604594-25604655)
chr2 (374-452)||(34356201-34356279)
chr2 (360-453)||(2550862-2550955)
chr2 (342-423)||(11069902-11069983)
chr2 (372-453)||(15079477-15079558)
chr2 (342-411)||(25540405-25540474)
chr2 (360-453)||(45263686-45263779)
chr2 (385-453)||(21286438-21286506)
chr2 (345-425)||(26805318-26805398)
chr2 (372-448)||(29653626-29653702)
[»] chr8 (20 HSPs)
chr8 (342-454)||(8141099-8141211)
chr8 (342-454)||(33401801-33401912)
chr8 (347-453)||(1012983-1013089)
chr8 (342-411)||(11298268-11298337)
chr8 (342-423)||(27975919-27976000)
chr8 (342-423)||(28033188-28033269)
chr8 (345-452)||(9859999-9860106)
chr8 (342-452)||(3418514-3418624)
chr8 (342-448)||(43032904-43033010)
chr8 (342-411)||(10927646-10927715)
chr8 (369-453)||(14666099-14666183)
chr8 (342-453)||(45521167-45521277)
chr8 (342-452)||(15884557-15884666)
chr8 (366-424)||(18091427-18091485)
chr8 (365-455)||(35496279-35496369)
chr8 (342-415)||(583848-583921)
chr8 (350-423)||(3567932-3568005)
chr8 (342-449)||(4479297-4479403)
chr8 (349-404)||(11785962-11786017)
chr8 (342-411)||(36662444-36662513)
[»] chr5 (29 HSPs)
chr5 (342-454)||(40117409-40117521)
chr5 (342-453)||(42861219-42861330)
chr5 (342-454)||(1538425-1538537)
chr5 (365-448)||(11845825-11845908)
chr5 (342-451)||(13664257-13664366)
chr5 (342-450)||(42086325-42086433)
chr5 (346-453)||(15034070-15034177)
chr5 (342-405)||(18045682-18045744)
chr5 (342-453)||(20525833-20525944)
chr5 (342-453)||(20682618-20682729)
chr5 (342-453)||(5731921-5732032)
chr5 (342-404)||(12766175-12766237)
chr5 (350-452)||(38897728-38897829)
chr5 (349-423)||(39099787-39099861)
chr5 (384-453)||(28857123-28857192)
chr5 (368-453)||(35561845-35561930)
chr5 (374-450)||(20705561-20705637)
chr5 (342-453)||(8513514-8513625)
chr5 (342-449)||(9805003-9805110)
chr5 (365-452)||(14588641-14588728)
chr5 (360-423)||(14974343-14974406)
chr5 (342-405)||(16757421-16757484)
chr5 (342-405)||(37263283-37263346)
chr5 (365-423)||(20255394-20255452)
chr5 (342-404)||(27648426-27648488)
chr5 (365-439)||(35245030-35245104)
chr5 (342-415)||(12705047-12705120)
chr5 (384-453)||(19572719-19572788)
chr5 (386-423)||(21375376-21375413)
[»] chr7 (22 HSPs)
chr7 (342-453)||(38578868-38578979)
chr7 (342-450)||(42210263-42210371)
chr7 (342-426)||(3353448-3353532)
chr7 (349-453)||(13095855-13095959)
chr7 (374-452)||(22573811-22573888)
chr7 (365-405)||(19914727-19914767)
chr7 (342-453)||(10047877-10047988)
chr7 (342-453)||(48804680-48804791)
chr7 (342-452)||(27875089-27875199)
chr7 (361-423)||(29805460-29805522)
chr7 (342-452)||(43861973-43862083)
chr7 (342-435)||(1605956-1606049)
chr7 (342-435)||(27028294-27028387)
chr7 (342-410)||(8734687-8734755)
chr7 (342-454)||(17748383-17748495)
chr7 (342-453)||(4195203-4195314)
chr7 (342-404)||(5069816-5069878)
chr7 (349-403)||(21530795-21530849)
chr7 (349-454)||(22973963-22974068)
chr7 (338-423)||(45960000-45960085)
chr7 (384-452)||(36619297-36619365)
chr7 (385-453)||(43925509-43925577)
[»] chr4 (37 HSPs)
chr4 (342-453)||(53599059-53599170)
chr4 (342-450)||(10541018-10541125)
chr4 (342-426)||(38075459-38075543)
chr4 (342-426)||(24166476-24166560)
chr4 (342-429)||(7246647-7246734)
chr4 (342-453)||(29895786-29895897)
chr4 (342-453)||(55921033-55921144)
chr4 (342-452)||(52950082-52950192)
chr4 (374-435)||(20421790-20421851)
chr4 (342-423)||(24850628-24850709)
chr4 (346-454)||(30317231-30317339)
chr4 (342-453)||(36145216-36145327)
chr4 (345-423)||(46108720-46108798)
chr4 (384-453)||(1446825-1446894)
chr4 (342-423)||(8424583-8424664)
chr4 (342-411)||(31588727-31588796)
chr4 (342-410)||(40780862-40780930)
chr4 (345-405)||(50485990-50486050)
chr4 (342-449)||(6779214-6779321)
chr4 (342-449)||(16450303-16450410)
chr4 (352-411)||(20532420-20532479)
chr4 (342-453)||(42722578-42722689)
chr4 (342-452)||(2559307-2559417)
chr4 (360-426)||(5472867-5472933)
chr4 (340-450)||(21429303-21429413)
chr4 (374-420)||(26479982-26480028)
chr4 (340-453)||(295532-295644)
chr4 (342-411)||(4738659-4738728)
chr4 (346-435)||(12703550-12703639)
chr4 (342-411)||(17080084-17080153)
chr4 (342-411)||(38166068-38166137)
chr4 (349-410)||(54946291-54946352)
chr4 (349-433)||(3159477-3159561)
chr4 (384-420)||(8064841-8064877)
chr4 (349-453)||(8889021-8889125)
chr4 (365-405)||(27248473-27248513)
chr4 (389-453)||(40272379-40272443)
[»] scaffold0291 (1 HSPs)
scaffold0291 (342-453)||(6852-6963)
[»] scaffold0316 (1 HSPs)
scaffold0316 (342-452)||(1615-1725)
[»] scaffold0170 (1 HSPs)
scaffold0170 (350-450)||(9845-9945)
[»] scaffold0002 (1 HSPs)
scaffold0002 (342-453)||(567-678)
[»] scaffold0004 (2 HSPs)
scaffold0004 (368-426)||(95008-95066)
scaffold0004 (349-420)||(7843-7914)
[»] scaffold0209 (1 HSPs)
scaffold0209 (342-415)||(12608-12681)
[»] scaffold0041 (1 HSPs)
scaffold0041 (342-423)||(25112-25193)
[»] scaffold0009 (2 HSPs)
scaffold0009 (342-410)||(42833-42901)
scaffold0009 (342-397)||(9495-9550)
[»] scaffold0223 (1 HSPs)
scaffold0223 (342-451)||(16878-16987)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 459
Target Start/End: Complemental strand, 8363015 - 8362565
Alignment:
Q  9 acatcatcaaaataagaactatccttaagagatccgtaaattacaatatcctcttcttttgttttgaaacacacagtcttcccttaaaagatgaannnnn 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  8363015 acatcatcaaaataagaactatccttaagagatccgtaaattacaatatcctcttcttttgttttgaaacacacagtcttcccttaaaagatgaattttt 8362916  T
Q  109 nnaccagtttaactatttttaaactttccgttaactgttgatggtgatttgcagactcctgttctgtgttggaagaaagttataaggtgtgggaattgat 208  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8362915 ttaccagtttaactatttttaaactttccgttaactgttgatggtgatttgcagactcctgttctatgttggaagaaagttataaggtgtgggaattgat 8362816  T
Q  209 atccatctcaagattggctgcaaatactatatgaacatgacataatacaagtaacaccacaacgtaaatattgtcctcgataaaacagaaaatgacgtga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8362815 atccatctcaagattggctgcaaatactatatgaacatgacataatacaagtaacaccacaacgtaaatattgtcctcaataaaacagaaaatgacgtga 8362716  T
Q  309 aaatagaacctatttgatattannnnnnnggcattcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggac 408  Q
    ||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8362715 aaatagaacctatttgatattatttttttggcattcgcaccggtttcggatccactaaaggtggacgactaatttggctcatgcgtagaggcatgcggac 8362616  T
Q  409 tggtcaaatgttgtttccactggaaattgaatccgatattccccgatcctt 459  Q
    ||| |||| |||||||||||||| ||||||| ||| |||||||||||||||    
T  8362615 tggccaaacgttgtttccactgggaattgaacccggtattccccgatcctt 8362565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 342 - 452
Target Start/End: Complemental strand, 29128024 - 29127914
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||| |||||||||||| ||||  |||||||||||||||||||||| ||||  ||| |||||||  | |||||||| ||| |    
T  29128024 ttcgcatcggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgttctccctggaaatcgaacc 29127925  T
Q  442 cgatattcccc 452  Q
    |||||||||||    
T  29127924 cgatattcccc 29127914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 449
Target Start/End: Complemental strand, 35316061 - 35315954
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||| ||| |||||||| ||||   ||||||||||||||||||||| ||||| ||| ||||||| || |||| ||| ||| |    
T  35316061 ttcgcatcggtttccgacccaccaaaagtgggcgactaatccagctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 35315962  T
Q  442 cgatattc 449  Q
    ||||||||    
T  35315961 cgatattc 35315954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 30767258 - 30767359
Alignment:
Q  351 gtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcc 450  Q
    ||||| || |||| |||||||||||| ||||  ||||| |||||||||||||||  ||||| ||| ||||||| || |||||||| ||| ||||||||||    
T  30767258 gtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcacactggccaagtgttgttccccctggaaatcgaacccgatattcc 30767357  T
Q  451 cc 452  Q
    ||    
T  30767358 cc 30767359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 49198452 - 49198345
Alignment:
Q  346 catcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgat 445  Q
    |||||||||| ||||||| || ||||| ||| ||||  |||||||||||||||||||||| ||||| ||| ||||||| || || | ||| ||| ||| |    
T  49198452 catcggtttctgatccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctaggaatcgaacccggt 49198353  T
Q  446 attccccg 453  Q
    ||||||||    
T  49198352 attccccg 49198345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 425
Target Start/End: Complemental strand, 4638262 - 4638176
Alignment:
Q  339 gcattcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttc 425  Q
    ||||||||||||||||| || ||| ||||||||||| | ||||  ||||| |||||||||| ||||| |||||||||  ||||||||    
T  4638262 gcattcgcatcggtttccgacccattaaaggtgggctactaatccggctcgtgcgtagaggtatgcgcactggtcaagcgttgtttc 4638176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 452
Target Start/End: Original strand, 34662321 - 34662431
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    ||||||||||||||  ||||||||||||||| ||| ||||| ||||||||| ||||| |||||| ||||  |||| ||| || |  ||| |||| ||| |    
T  34662321 ttcgcatcggtttccaatccactaaaggtggacgactaattcggctcatgcatagagacatgcgtactgaccaaacgttattcctcctgaaaatcgaacc 34662420  T
Q  442 cgatattcccc 452  Q
    |||||||||||    
T  34662421 cgatattcccc 34662431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 426
Target Start/End: Original strand, 43330752 - 43330818
Alignment:
Q  360 ccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||| |||||||||||| ||||  ||||| |||||||||||||||| ||||||||| ||||||||||    
T  43330752 ccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagtgttgtttcc 43330818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 29135976 - 29135907
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||||||||||||||||| ||||| ||| ||||||| || |||| ||| ||||||| |||||||||    
T  29135976 ggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaatccggtattccccg 29135907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 45877517 - 45877448
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||||||||||||||| | ||||| ||| |||||||||| |||||||| ||| ||| |||||||||    
T  45877517 ggctcatgcgtagaggcatgtgcactggccaagtgttgtttcccctggaaatcgaacccggtattccccg 45877448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 47749107 - 47749176
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||||||||||| || | || |||||||||||| ||||| ||||| |||||||||||||||| |||||    
T  47749107 ttcgcatcggtttccgacctaccaaaggtgggcgactaattcggctcgtgcgtagaggcatgcgcactgg 47749176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 28572213 - 28572324
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||||||| ||||  ||||| |||||||||||||||  ||||| |||  ||||||||| |||| ||| ||| |    
T  28572213 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcatactggccaagcgttgtttcccctgggaatcgaacc 28572312  T
Q  442 cgatattccccg 453  Q
    |  |||||||||    
T  28572313 cagtattccccg 28572324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 47471936 - 47471873
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    |||||||||||||| || |||| |||||||| ||| ||||| |||||||||||||| |||||||    
T  47471936 ttcgcatcggtttccgacccaccaaaggtggacgactaattcggctcatgcgtagaagcatgcg 47471873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 3507535 - 3507616
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| ||||||| || |||| ||||||| |||| ||||  ||||| |||||||||||||||| ||||| ||| |||||||    
T  3507535 ttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 3507616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 451
Target Start/End: Complemental strand, 7650332 - 7650223
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| |||||||  | |||| |||||||||||| ||||  ||||| ||||||||| ||| || ||||| ||| ||||||| || |||||||| ||| |    
T  7650332 ttcgcaccggtttccaacccaccaaaggtgggcgactaatccggctcgtgcgtagagacattcgtactggccaagtgttgttccccctggaaatcgaacc 7650233  T
Q  442 cgatattccc 451  Q
    || |||||||    
T  7650232 cggtattccc 7650223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 453
Target Start/End: Original strand, 45402355 - 45402464
Alignment:
Q  344 cgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccg 443  Q
    |||||| ||||| || ||||||||||||  ||| ||||  |||||||||||||||||||||| || || | | ||||||| || || | ||| ||| |||    
T  45402355 cgcatcagtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcacaggccgagtgttgttccctctaggaatcgaacccg 45402454  T
Q  444 atattccccg 453  Q
    ||||||||||    
T  45402455 atattccccg 45402464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 49543615 - 49543562
Alignment:
Q  351 gtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgc 404  Q
    ||||| || ||||||||||||||||| ||||| ||||| |||||||||||||||    
T  49543615 gtttccgacccactaaaggtgggcgactaattcggctcgtgcgtagaggcatgc 49543562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 54261331 - 54261262
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| ||||||| || ||||||||||||  ||| ||||  |||||||||||||||||||||| |||||    
T  54261331 ttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactgg 54261262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 452
Target Start/End: Complemental strand, 2030521 - 2030442
Alignment:
Q  372 ggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcccc 452  Q
    ||||||||||| | |||||| ||| ||||||||| |||||||||| ||||||| |  || |||| ||||||||||||||||    
T  2030521 ggcgattaattcgactcatgtgtaaaggcatgcgaactggtcaaacgttgttt-ctttgaaaatcgaatccgatattcccc 2030442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 7310705 - 7310813
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||| |||| || |||| ||||  ||||| |||||||||||||||  || || ||| ||||||| ||||||| ||| ||| |    
T  7310705 ttcgcatcggtttccgacccaccaaagatgagcgactaatccggctcgtgcgtagaggcatgcacaccgggcaagtgttgttcccactgggaatcgaacc 7310804  T
Q  442 cgatattcc 450  Q
    || ||||||    
T  7310805 cggtattcc 7310813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 23511649 - 23511593
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttg 421  Q
    |||||||| ||||||||  | |||||||||||||||||||| |||||||||| ||||    
T  23511649 aaaggtggacgattaatccgactcatgcgtagaggcatgcgcactggtcaaacgttg 23511593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 3136696 - 3136806
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || | || |||||||| ||| ||||  | |||||||||||||||||||| ||||  ||| ||||| |||| ||| |||| |||||    
T  3136696 ttcgcaccggtttccgaccaaccaaaggtggacgactaatccgactcatgcgtagaggcatgcgcactgcccaagtgttg-ttcccctgaaaatcgaatc 3136794  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  3136795 cggtattccccg 3136806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 7328948 - 7328838
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||  || |||| |||||||||||| ||||  |||||||||||| ||||||||| ||||| ||| ||||||| || |||| ||| ||| |    
T  7328948 ttcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcatgcgta-aggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 7328850  T
Q  442 cgatattccccg 453  Q
    || |||| ||||    
T  7328849 cggtatttcccg 7328838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 7648822 - 7648764
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||||||| ||||  ||||| |||||||||| ||||| |||||||||| ||||||    
T  7648822 aaaggtgggcgactaatccggctcgtgcgtagaggtatgcgcactggtcaaacgttgtt 7648764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 15320291 - 15320229
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgc 404  Q
    |||||| ||||||| || |||| |||||||||||| ||||  ||||| |||||||||||||||    
T  15320291 ttcgcaccggtttctgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgc 15320229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 26043894 - 26043836
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    ||||||| |||| ||||  |||||||||||||||||||||| ||||| ||| |||||||    
T  26043894 aaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtt 26043836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 32873574 - 32873624
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaa 415  Q
    |||||||||||| |||| |||||||| |||||||||||| | |||||||||    
T  32873574 aaaggtgggcgactaatctggctcatacgtagaggcatgtgcactggtcaa 32873624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 55069688 - 55069762
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    ||||||| || |||| ||||||| |||||||||  ||||| |||||||||||||| | ||||| |||| ||||||    
T  55069688 cggtttccgacccaccaaaggtgagcgattaatccggctcgtgcgtagaggcatgtgcactggccaaacgttgtt 55069762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 2668148 - 2668083
Alignment:
Q  360 ccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttc 425  Q
    |||||||||||| |||| ||||   |||| |||||||||||||||| ||||| ||| |||||||||    
T  2668148 ccactaaaggtgagcgactaatccagctcttgcgtagaggcatgcgcactggccaagtgttgtttc 2668083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 24506657 - 24506734
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    ||||||| || |||| || |||| |||| |||| || |||||||||||||||||| | |||||||||  |||||||||    
T  24506657 cggtttccgacccaccaatggtgagcgactaatctgactcatgcgtagaggcatgtgcactggtcaagcgttgtttcc 24506734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 33689015 - 33688946
Alignment:
Q  383 tggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcccc 452  Q
    ||||||||||||||||||||||| ||||| ||| |||| || ||  | | ||||||| ||||||||||||    
T  33689015 tggctcatgcgtagaggcatgcgcactggccaagtgttattccccttaggaattgaacccgatattcccc 33688946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 49021205 - 49021274
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| ||||||| || |||| || ||||| ||| ||||  |||||||||||||||||||||| |||||    
T  49021205 ttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactgg 49021274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 50405612 - 50405689
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    ||||||| || |||| || ||||||||| ||||  | ||| |||||||||||||||| |||||||||  |||||||||    
T  50405612 cggtttccgacccaccaatggtgggcgactaatccgactcgtgcgtagaggcatgcgcactggtcaagcgttgtttcc 50405689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 452
Target Start/End: Complemental strand, 8164648 - 8164548
Alignment:
Q  352 tttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccc 451  Q
    |||| ||||||| |||||||||||| ||||  | ||| |||||| ||||||||| ||||| |||  |||||| ||  | ||||||||| ||| |||||||    
T  8164648 tttccgatccaccaaaggtgggcgactaatccgactcgtgcgtaaaggcatgcgcactggccaagcgttgttccccttagaaattgaacccggtattccc 8164549  T
Q  452 c 452  Q
    |    
T  8164548 c 8164548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 25295065 - 25294981
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||||| |||||||  | |||| || ||||| ||| ||||  ||||||||| |||||||||||| ||||| ||| ||||||||||    
T  25295065 ttcgcaccggtttccaacccaccaatggtggacgactaatccggctcatgcatagaggcatgcgcactggccaagtgttgtttcc 25294981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 29762157 - 29762269
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||||| ||| ||||   |||||||| |||||||||||| ||||| ||| ||||||| || |||  ||| | | |    
T  29762157 ttcgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcatagaggcatgcgcactggccaagtgttgttgcccctgagaatcggacc 29762256  T
Q  442 cgatattccccga 454  Q
    |||||||||||||    
T  29762257 cgatattccccga 29762269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 452
Target Start/End: Complemental strand, 33251725 - 33251657
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcccc 452  Q
    |||||||||||||||||||||  ||||| |||| |||||| |||| || ||| ||| ||| ||||||||    
T  33251725 ggctcatgcgtagaggcatgcacactggccaaacgttgttcccaccgggaatcgaacccggtattcccc 33251657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 35998573 - 35998657
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||||| ||||||| || ||||||||||||| ||||||||    ||| |||||||||||||| | |||| ||||  |||||||||    
T  35998573 ttcgcaccggtttctgacccactaaaggtggacgattaatccaactcgtgcgtagaggcatgtgcactgatcaagcgttgtttcc 35998657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 47219249 - 47219165
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||||| ||||||| || |||  |||||||| ||| ||||  |||||||||||||||||||||| ||| | |||  |||||||||    
T  47219249 ttcgcaccggtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgttgtttcc 47219165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 43959823 - 43959934
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| |||||||||||||||||||| ||||  ||||| |||||||||||||||| ||||| |||  |||||| || |||| ||||||| |    
T  43959823 ttcgcaccggtttccgatccactaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctgggaattgaacc 43959922  T
Q  442 cgatattccccg 453  Q
    ||||||||||||    
T  43959923 cgatattccccg 43959934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 449
Target Start/End: Original strand, 18649354 - 18649461
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| |||||||  |||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||  |||||| || ||| |||| ||| |    
T  18649354 ttcgcaccggtttccaatccactaaaggtgggcgattaatctggctcgtacgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacc 18649453  T
Q  442 cgatattc 449  Q
    ||||||||    
T  18649454 cgatattc 18649461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 10336619 - 10336515
Alignment:
Q  345 gcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccga 444  Q
    ||||||||||  ||||||  |||||||| ||||||||  |||||||||||||||||||||| |||||||||  |||||| || ||| |||| ||| ||||    
T  10336619 gcatcggttttcgatccatcaaaggtggacgattaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacccga 10336520  T
Q  445 tattc 449  Q
    |||||    
T  10336519 tattc 10336515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 26660243 - 26660132
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||| ||| ||||  |||||||||||||||||||||| |||| |||||||||||| ||  ||||||| ||| |    
T  26660243 ttcgcaccggtttccgacccaccaaaggtgg-cgactaatccggctcatgcgtagaggcatgcgtactgatcaaatgttgttccccgtggaaatcgaacc 26660145  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  26660144 cggtattccccga 26660132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 50503363 - 50503474
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||| |  |||||||||  |||  ||||| |||||||||||||||| ||||||||| ||||||| || |||| ||| ||| |    
T  50503363 ttcgcatcggtttccgacccaccattggtgggcgacaaatccggctcgtgcgtagaggcatgcgcactggtcaagtgttgttccccctgggaatcgaacc 50503462  T
Q  442 cgatattccccg 453  Q
    ||||||||||||    
T  50503463 cgatattccccg 50503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 32142848 - 32142956
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||  ||||||| |||| ||||| |||||||||||| ||||||||| ||||| ||| ||||||| || ||| |||| ||| |    
T  32142848 ttcgcatcggtttccgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcgcactggccaagtgttgttccccctgaaaatcgaacc 32142947  T
Q  442 cgatattcc 450  Q
    || ||||||    
T  32142948 cggtattcc 32142956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 32150924 - 32151032
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||  || |||  ||||||| |||| ||||| |||||||||||| ||||||||| ||||  ||||||||||| || |||||||| ||| |    
T  32150924 ttcgcatcggttttcgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcgcactgaccaaatgttgttccccctggaaatcgaacc 32151023  T
Q  442 cgatattcc 450  Q
     ||||||||    
T  32151024 tgatattcc 32151032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 33004059 - 33004128
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    ||||| |||||||||||||||| ||||| |||   |||||||| |||||||| |||||||||||||||||    
T  33004059 ggctcgtgcgtagaggcatgcgcactggccaagcattgtttcccctggaaatcgaatccgatattccccg 33004128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 48798114 - 48798183
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||||||||||||||||| ||| |||||  |||||| || |||||||| ||| |||||||||||||    
T  48798114 ggctcatgcgtagaggcatgcgcactagtcaagcgttgttccccctggaaatcgaacccgatattccccg 48798183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 49078178 - 49078109
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||||||||||||||||| ||||| ||| |||||||||| |||| ||| ||| ||| |||||||||    
T  49078178 ggctcatgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcgaacccggtattccccg 49078109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 5855628 - 5855516
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || ||||||||||||  ||| ||||  | |||||||||||||||||||| ||||| |||  |||||| |  |||| ||| ||| |    
T  5855628 ttcgcatcggtttccgacccactaaaggtgaacgactaatccgcctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacc 5855529  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  5855528 cggtattccccga 5855516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 450
Target Start/End: Complemental strand, 26325918 - 26325810
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||||| ||| ||||  |||||||||||||||||||||| ||||  ||| ||||||| || |||| ||| ||| |    
T  26325918 ttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgttcccgctgggaatcgaacc 26325819  T
Q  442 cgatattcc 450  Q
    |||||||||    
T  26325818 cgatattcc 26325810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 8764097 - 8763986
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||||| ||| ||||  ||||| |||||||||||||||| ||||| ||| ||||||| || |||| ||  ||| |    
T  8764097 ttcgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaaacgaacc 8763998  T
Q  442 cgatattccccg 453  Q
    ||||||||||||    
T  8763997 cgatattccccg 8763986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 411
Target Start/End: Original strand, 12036756 - 12036815
Alignment:
Q  352 tttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||| ||||||| |||||||| |||||||| |||||| |||||||||||||||| |||||    
T  12036756 tttccgatccaccaaaggtggacgattaatctggctcgtgcgtagaggcatgcgcactgg 12036815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 452
Target Start/End: Original strand, 10172973 - 10173083
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||||||| ||||  |||||||||||||||||||| | ||||| |||  ||||||     ||| |||||||||    
T  10172973 ttcgcaccggtttccgacccaccaaaggtgggcgagtaatccggctcatgcgtagaggcatgggcactggccaagcgttgttctttatgggaattgaatc 10173072  T
Q  442 cgatattcccc 452  Q
    || ||||||||    
T  10173073 cggtattcccc 10173083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 448
Target Start/End: Original strand, 42710144 - 42710246
Alignment:
Q  346 catcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgat 445  Q
    |||||||||| |||| || || ||||| ||| ||||| || | ||||||||||||||||| ||||| ||| | |||||||| ||| |||| ||| |||||    
T  42710144 catcggtttccgatctaccaatggtggacgactaattcggtttatgcgtagaggcatgcgcactggccaagtattgtttcccctgaaaatcgaacccgat 42710243  T
Q  446 att 448  Q
    |||    
T  42710244 att 42710246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 454
Target Start/End: Complemental strand, 10422871 - 10422782
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccga 454  Q
    |||||||| ||| ||||  |||||||||||||||||||||| ||||| ||| ||||||| |  || ||||| ||| ||| ||||||||||    
T  10422871 aaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttcctcctagaaatcgaacccggtattccccga 10422782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 9659181 - 9659292
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| |||||||  | |||| |||||||| ||| ||||  |||||||||||| ||||||||| ||| |||||| |||| |||| |||| ||| ||| |    
T  9659181 ttcgcaccggtttccaacccaccaaaggtggacgactaatccggctcatgcgtaaaggcatgcgcactagtcaaacgttg-ttcccctgggaatcgaacc 9659279  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  9659280 cggtattccccga 9659292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 12744525 - 12744633
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||| ||||| || |||| ||  ||| |||| ||||| ||||||||||||||| |||||| ||| |||||  |||||| || ||| |||| |||||    
T  12744525 ttcgcatctgtttctgacccaccaacagtgagcgactaattcggctcatgcgtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatc 12744624  T
Q  442 cgatattcc 450  Q
     ||||||||    
T  12744625 tgatattcc 12744633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 12755515 - 12755623
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||| ||||| || |||| ||  ||| |||| ||||| ||||||||||||||| |||||| ||| |||||  |||||| || ||| |||| |||||    
T  12755515 ttcgcatctgtttctgacccaccaacagtgagcgactaattcggctcatgcgtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatc 12755614  T
Q  442 cgatattcc 450  Q
     ||||||||    
T  12755615 tgatattcc 12755623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 28324624 - 28324691
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccc 451  Q
    |||||||||||||||||||||| ||||  ||| |||||||||| | || ||| ||| |||||||||||    
T  28324624 ggctcatgcgtagaggcatgcgcactgaccaagtgttgtttccccggggaatcgaacccgatattccc 28324691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 41663858 - 41663969
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||||| ||| ||||   ||||||||||||||||||||| ||||  ||| ||||||| || |||| ||| ||| |    
T  41663858 ttcgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcgaacc 41663957  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  41663958 cggtattccccg 41663969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 426
Target Start/End: Original strand, 9853297 - 9853363
Alignment:
Q  360 ccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||| |||||||| |||||||| ||| || || ||||||||||||| |||||| ||| |||||||||    
T  9853297 ccaccaaaggtggacgattaatctggttcgtgtgtagaggcatgcgcactggtaaaacgttgtttcc 9853363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 14357813 - 14357755
Alignment:
Q  390 tgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatatt 448  Q
    |||||||||||||||| |||||||||| |||||||| | ||||||| ||| | ||||||    
T  14357813 tgcgtagaggcatgcgcactggtcaaacgttgtttcaattggaaatcgaacctgatatt 14357755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 31734368 - 31734310
Alignment:
Q  368 ggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    ||||| ||||||||||||||| | |||||||||||||| ||||| |||  |||||||||    
T  31734368 ggtggacgattaatttggctcgtacgtagaggcatgcgcactggccaatcgttgtttcc 31734310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 423
Target Start/End: Complemental strand, 50095003 - 50094929
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    ||||||| || ||||||| ||||| ||| ||||  | |||||||||||| ||||||| |||||||||| ||||||    
T  50095003 cggtttccgacccactaatggtggacgactaatccgactcatgcgtagaagcatgcgtactggtcaaacgttgtt 50094929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 423
Target Start/End: Complemental strand, 16956564 - 16956491
Alignment:
Q  350 ggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| || |||| ||||||| | || ||||  ||||| |||||||||||||||| |||||||||| ||||||    
T  16956564 ggtttccgacccaccaaaggtgagtgactaatccggctcgtgcgtagaggcatgcgcactggtcaaacgttgtt 16956491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 17642006 - 17642087
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| | ||||| || |||| |||||||| ||| ||||  ||||| |||||||||||||||| ||||| ||| |||||||    
T  17642006 ttcgcaccagtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 17642087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 425
Target Start/End: Complemental strand, 19195430 - 19195389
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttc 425  Q
    |||||||||||||||||||||| ||||| |||| ||||||||    
T  19195430 ggctcatgcgtagaggcatgcgcactggccaaacgttgtttc 19195389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 34719882 - 34719809
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaa 415  Q
    |||||| | ||||| || |||| ||||||| |||| |||| || ||| |||||||||||||||| |||||||||    
T  34719882 ttcgcaccagtttccgacccaccaaaggtgagcgactaatctgactcgtgcgtagaggcatgcgcactggtcaa 34719809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 35211181 - 35211237
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    ||||||| || |||| |||||||| ||| |||||  |||||||||||||||||||||    
T  35211181 cggtttccgacccaccaaaggtggacgactaattcagctcatgcgtagaggcatgcg 35211237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 38791612 - 38791696
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||| ||||||||  ||||||  |||| ||| ||| ||||| |||||||||||||||||||||| ||| | |||  |||||||||    
T  38791612 ttcgtatcggtttttgatccatcaaagatggacgactaattcggctcatgcgtagaggcatgcgcacttgccaatcgttgtttcc 38791696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 5253224 - 5253335
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||||||||||||  |||||||||||||||||||||| ||||| ||| ||||||| || |||| ||| ||| |    
T  5253224 ttcgcaccggtttccgacccaccaaaggtgggcgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 5253323  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  5253324 cggtattccccg 5253335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 13036005 - 13036117
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| ||  |||| ||| |||| ||||||||||||||||||||||| ||||| ||| ||||||| || ||| |||| ||| |    
T  13036005 ttcgcaccggtttccgacccaccaatagtggacgactaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgaaaatcgaacc 13036104  T
Q  442 cgatattccccga 454  Q
    |||||||||||||    
T  13036105 cgatattccccga 13036117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 8932770 - 8932659
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||  ||||||||| |||||||  |||||||||||||||||||||| ||| | ||| ||||||| || |||| ||| ||| |    
T  8932770 ttcgcaccggtttccgacccatcaaaggtgggtgattaatccggctcatgcgtagaggcatgcgcactagccaagtgttgttccccctgggaatcgaacc 8932671  T
Q  442 cgatattccccg 453  Q
    ||||||||||||    
T  8932670 cgatattccccg 8932659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 8944236 - 8944125
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||  ||||||||| |||||||  |||||||||||||||||||||| ||| | ||| ||||||| || |||| ||| ||| |    
T  8944236 ttcgcaccggtttccgacccatcaaaggtgggtgattaatccggctcatgcgtagaggcatgcgcactagccaagtgttgttccccctgggaatcgaacc 8944137  T
Q  442 cgatattccccg 453  Q
    ||||||||||||    
T  8944136 cgatattccccg 8944125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 453
Target Start/End: Complemental strand, 12606516 - 12606428
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||||||| ||||  ||||| |||||||||||||||| ||||| |||| |||||| || |||||||| ||||| | |||||||||    
T  12606516 aaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttccccctggaaatcgaatctggtattccccg 12606428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 30410554 - 30410473
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||||||||| || |||| |||| || |||||||||   ||||||||||||||||||||| |||||| || |||||||    
T  30410554 ttcgcatcggtttccgacccaccaaagatgagcgattaatccagctcatgcgtagaggcatgcgcactggttaagtgttgtt 30410473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 11142668 - 11142624
Alignment:
Q  386 ctcatgcgtagaggcatgcggactggtcaaatgttgtttccactg 430  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  11142668 ctcatgcgtagaggcatgcgcactggtcaaacgttgtttccactg 11142624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 21898757 - 21898646
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || ||||||||||||  ||| ||||  |||||||||||||||||||||| ||||| |||  |||||| |  |||| ||| ||| |    
T  21898757 ttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacc 21898658  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  21898657 cggtattccccg 21898646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 451
Target Start/End: Original strand, 29333163 - 29333248
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccc 451  Q
    |||||||| ||| | ||| |||||||||||||||||||||| ||||| |||| |||| |||| |||||||| ||| ||| |||||||    
T  29333163 aaaggtggacgactgattcggctcatgcgtagaggcatgcgcactggccaaacgttg-ttcccctggaaatcgaacccggtattccc 29333248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 32157175 - 32157249
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    ||||||| ||||||| |||| |||  || |||| ||||||||||||||||| ||||| ||||||||| |||||||    
T  32157175 cggtttctgatccaccaaagatggatgactaatctggctcatgcgtagaggtatgcgcactggtcaagtgttgtt 32157249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 8938820 - 8938739
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| ||||||| || |||  |||||||| ||| ||||| |||||||||||||| || |||| ||||||||| |||||||    
T  8938820 ttcgcaccggtttccgacccatcaaaggtggacgactaattcggctcatgcgtagatgcttgcgcactggtcaagtgttgtt 8938739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 9633626 - 9633695
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| ||||||| || |||| |||||||||||| ||||  ||||| |||||||||||||||| |||||    
T  9633626 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactgg 9633695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 30788854 - 30788935
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| ||||||| || |||| |||||||||||| ||||  ||||| ||| |||||||||||| ||||| |||| ||||||    
T  30788854 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcctagaggcatgcgcactggccaaacgttgtt 30788935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 14107359 - 14107471
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||||||   ||||||| ||||  |||||||||||||||||||| | |||||||||  |||||| |  |||| ||| ||| |    
T  14107359 ttcgcaccggtttccgacccactaataatgggcgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgttcctcctgggaatcgaacc 14107458  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  14107459 cggtattccccga 14107471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 451
Target Start/End: Original strand, 9179747 - 9179846
Alignment:
Q  352 tttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccc 451  Q
    |||| ||||||| |||||||| ||| ||||   ||||||||||||||| ||||  ||||||||| ||||||| || |||| ||| ||| ||| |||||||    
T  9179747 tttccgatccaccaaaggtggacgactaatccagctcatgcgtagaggtatgcatactggtcaagtgttgttccccctgggaatcgaacccggtattccc 9179846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 8149798 - 8149879
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| |||||||  | |||| |||||||| ||| ||||| |||| ||||||||||||||| | | ||||||||| |||||    
T  8149798 ttcgcaccggtttccaacccaccaaaggtggacgactaattcggctaatgcgtagaggcatgtgcattggtcaaatattgtt 8149879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 8611975 - 8612048
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaa 415  Q
    |||||| ||||||| || |||| |||||||||||| ||||  || ||||||||||| ||||||  |||||||||    
T  8611975 ttcgcaccggtttctgacccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacactggtcaa 8612048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 34954620 - 34954701
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    ||||||| |||||| || |||  |||||||| ||| |||| ||||||||||||||||| ||| | ||||| |||| ||||||    
T  34954620 ttcgcattggtttccgacccatcaaaggtggacgactaatctggctcatgcgtagaggtatgtgcactggccaaacgttgtt 34954701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 452
Target Start/End: Complemental strand, 9147368 - 9147300
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcccc 452  Q
    |||| ||||||||||||||| | ||||||||| ||| ||| || |||| ||| ||| ||||||||||||    
T  9147368 ggcttatgcgtagaggcatgtgcactggtcaagtgtcgttccccctgggaatcgaacccgatattcccc 9147300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 33005856 - 33005775
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||||||||| || |||||||||||| ||||||||| || |||||||||||||||||||| ||||| ||| |||||||    
T  33005856 ttcgcatcggtttccgacccactaaaggtgagcgattaatctgcctcatgcgtagaggcatgcgcactggccaagtgttgtt 33005775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 3811692 - 3811800
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||| |||||||||||| ||||  |||||||||||||||||||||| | ||  ||| ||||||| || |||| ||| ||| |    
T  3811692 ttcgcatcggtttctgacccaccaaaggtgggcgagtaatccggctcatgcgtagaggcatgcgcattgaccaagtgttgttccctctgggaatcgaacc 3811791  T
Q  442 cgatattcc 450  Q
    |||||||||    
T  3811792 cgatattcc 3811800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 9360749 - 9360833
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||||| ||||||| |  ||||||||||||||||| ||||| ||||| |||||||||||||||| ||||| |||| |||||||||    
T  9360749 ttcgcaccggtttccggcccactaaaggtgggcgactaattcggctcgtgcgtagaggcatgcgcactggccaaacgttgtttcc 9360833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 12864329 - 12864217
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||||| ||| |||| ||||||||||| ||||||||||| ||||  ||| ||||||| || |||||||| |||||    
T  12864329 ttcgcaccggtttccgacccaccaatggtggacgactaatctggctcatgcgcagaggcatgcgcactgaccaagtgttgttccccctggaaatcgaatc 12864230  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  12864229 cggtattccccga 12864217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 28616380 - 28616488
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || ||||||||| ||||||| |||| |||||| |||||||||||||||| ||||  ||| |||| || || ||| |||| ||| |    
T  28616380 ttcgcaccggtttctgacccactaaagatgggcgactaatctggctcgtgcgtagaggcatgcgcactgcccaagtgttattccccctgaaaatcgaacc 28616479  T
Q  442 cgatattcc 450  Q
    |||||||||    
T  28616480 cgatattcc 28616488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 41220740 - 41220629
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || ||||||||||||  ||| ||||| |||||||||||||||||||||| ||||| |||  |||||| |  |||| ||| ||| |    
T  41220740 ttcgcaccggtttccgacccactaaaggtgaacgactaattcggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacc 41220641  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  41220640 cggtattccccg 41220629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 44945698 - 44945635
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    |||||| ||||||| |||||||||||||||||||| ||||  ||||| ||||||||||||||||    
T  44945698 ttcgcaccggtttccgatccactaaaggtgggcgactaatccggctcgtgcgtagaggcatgcg 44945635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 453
Target Start/End: Complemental strand, 331588 - 331495
Alignment:
Q  360 ccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||| |||||||||||| ||||  |||||||||||||| ||||||| ||||| ||| ||||||| || |||| ||| ||| ||| |||||||||    
T  331588 ccaccaaaggtgggcgactaatccggctcatgcgtagaagcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccg 331495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 6358194 - 6358263
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||||||||||||||||| ||||| ||| ||||||| || |||||||| ||||| | |||||||||    
T  6358194 ggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaatctggtattccccg 6358263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 34346288 - 34346369
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| ||||||| || |||| ||||||| ||||||||| || |||||||||||||||||||  ||||| ||| |||||||    
T  34346288 ttcgcaccggtttccgacccaccaaaggtgagcgattaatctgactcatgcgtagaggcatgcacactggccaagtgttgtt 34346369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 453
Target Start/End: Complemental strand, 7787146 - 7787050
Alignment:
Q  357 gatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    ||||||| |||| ||||||| ||||  ||||| |||||||||||||||| ||||| ||| | ||||| || |||||||| ||| ||| |||||||||    
T  7787146 gatccaccaaagatgggcgactaatccggctcgtgcgtagaggcatgcgtactggccaagtattgttccccctggaaatcgaacccggtattccccg 7787050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 18902531 - 18902643
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||||||| |||| |||||| ||||||||| || ||| |||||||||  |||||| ||  ||| ||| ||| |    
T  18902531 ttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgtagagacacgcgcactggtcaagcgttgttccccgtgggaatcgaacc 18902630  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  18902631 cggtattccccga 18902643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 449
Target Start/End: Complemental strand, 8410236 - 8410129
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || || | ||| |||||||| ||||  ||||| |||||||||||||||| ||||| ||| ||||||| || |||| ||| ||| |    
T  8410236 ttcgcaccggtttccgaccccccaaaagtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 8410137  T
Q  442 cgatattc 449  Q
    ||||||||    
T  8410136 cgatattc 8410129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 12455415 - 12455304
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || |||| |||| ||||  ||||| |||||||||||||||| |||||  ||  ||||||||| |||||||| ||| |    
T  12455415 ttcgcaccggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggctaagcgttgtttcccctggaaatcgaacc 12455316  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  12455315 cggtattccccg 12455304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 21642055 - 21641992
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    |||||| ||||||  || |||| ||||| |||||||||||| ||||||||||||||||||||||    
T  21642055 ttcgcaccggttttcgacccaccaaaggcgggcgattaattcggctcatgcgtagaggcatgcg 21641992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 7747379 - 7747298
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| ||||||| || ||||||||||||  ||| ||||  |||||||||||||||||||||  ||||| |||| ||||||    
T  7747379 ttcgcaccggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgtt 7747298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 10823165 - 10823096
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| ||||||| || |||| |||||||||||| ||||  ||||| |||||||||||||||| |||||    
T  10823165 ttcgcaccggtttccgacccacaaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactgg 10823096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 16325700 - 16325619
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| ||||||| || |||| || ||||| ||| |||| ||||||||||||||||||||||  ||||| ||| |||||||    
T  16325700 ttcgcaccggtttccgacccaccaatggtggacgactaatctggctcatgcgtagaggcatgcacactggccaagtgttgtt 16325619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 38005507 - 38005438
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| | ||||| ||||||| |||||||||||| ||||  |||||||| ||||||||||||| |||||    
T  38005507 ttcgcaccagtttccgatccaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactgg 38005438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 10026626 - 10026698
Alignment:
Q  351 gtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    ||||| || |||| |||||||| ||| ||||  |||||||||||||||||||||| ||||| |||| ||||||    
T  10026626 gtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgtt 10026698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 14169610 - 14169722
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||| | ||| ||||  ||||||||||||||| |||||| ||||||||| ||||||| || | |  ||| ||| |    
T  14169610 ttcgcaccggtttccgacccaccaatggtagacgactaatccggctcatgcgtagagacatgcgcactggtcaagtgttgttcccccggagaatcgaacc 14169709  T
Q  442 cgatattccccga 454  Q
    |||||||||||||    
T  14169710 cgatattccccga 14169722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 10046487 - 10046561
Alignment:
Q  351 gtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    ||||| || |||| |||||||| ||| ||||  |||||||||||||||||||||| ||| |||||| |||||||||    
T  10046487 gtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcact-gtcaaacgttgtttcc 10046561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 25604655 - 25604594
Alignment:
Q  386 ctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatatt 448  Q
    |||||||||||||||||||  |||||||||| |||| |||| |||||||| ||||||| ||||    
T  25604655 ctcatgcgtagaggcatgcatactggtcaaacgttg-ttcccctggaaatcgaatccggtatt 25604594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 452
Target Start/End: Complemental strand, 34356279 - 34356201
Alignment:
Q  374 cgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcccc 452  Q
    ||||||||  ||||||||| |||||||||||| ||||  ||| ||||||| || |||||||| ||| ||| ||||||||    
T  34356279 cgattaatccggctcatgcatagaggcatgcgcactgaccaagtgttgttccccctggaaatcgaacccggtattcccc 34356201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 453
Target Start/End: Complemental strand, 2550955 - 2550862
Alignment:
Q  360 ccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||| ||| |||||||| ||||  ||||||||||||||| |||||| |||||  || ||||||| |  |||| ||| ||| |||||||||||||    
T  2550955 ccaccaaaagtgggcgactaatccggctcatgcgtagagacatgcgcactggctaagtgttgttcctcctgggaatcgaacccgatattccccg 2550862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 11069983 - 11069902
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||||||||| || |||| || ||||| ||| |||||  |||| |||||||||| ||||| ||||| |||| ||||||    
T  11069983 ttcgcatcggtttccgacccaccaacggtggacgactaattcagctcgtgcgtagaggtatgcgcactggccaaacgttgtt 11069902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 15079558 - 15079477
Alignment:
Q  372 ggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    ||||| ||||||||||| ||||||||| |||||  |||||||||  |||||| || |||||||| ||| ||  |||||||||    
T  15079558 ggcgactaatttggctcgtgcgtagagtcatgcacactggtcaagcgttgttccccctggaaatcgaaccctgtattccccg 15079477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 25540405 - 25540474
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| ||||||| || |||| |||||||| ||| ||||  ||||| |||||||||||||||| |||||    
T  25540405 ttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactgg 25540474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 453
Target Start/End: Original strand, 45263686 - 45263779
Alignment:
Q  360 ccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||| |||| || |||||||||  ||||| |||||||||||||||| ||||| |||  |||||| || |||| ||| ||| ||| |||||||||    
T  45263686 ccaccaaagatgagcgattaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccctctgggaatcgaacccggtattccccg 45263779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 21286506 - 21286438
Alignment:
Q  385 gctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||| |||||||||||||||| |||||||||  ||||||||  |||| ||| ||| ||| |||||||||    
T  21286506 gctcgtgcgtagaggcatgcgcactggtcaagcgttgtttcgcctgggaatcgaacccggtattccccg 21286438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 26805398 - 26805318
Alignment:
Q  345 gcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttc 425  Q
    ||||||||||  || |||| |||||||||||| ||||  | |||||||||||||||||| | ||||| |||| || |||||    
T  26805398 gcatcggttttcgagccaccaaaggtgggcgactaatccgactcatgcgtagaggcatgtgcactggccaaacgtcgtttc 26805318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 448
Target Start/End: Complemental strand, 29653702 - 29653626
Alignment:
Q  372 ggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatatt 448  Q
    ||||| ||||| ||||| |||||||||||||||| ||||  |||  ||||||| | |||||||| ||||||| ||||    
T  29653702 ggcgactaattcggctcgtgcgtagaggcatgcgcactgcccaagcgttgttttccctggaaatcgaatccggtatt 29653626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 8141211 - 8141099
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||| ||| |||| ||| |||||  ||||||||||||||||||||| ||||| |||  ||||||||| |||||||| ||| |    
T  8141211 ttcgcatcggtttctgacccaccaaatgtggacgactaattcagctcatgcgtagaggcatgcgcactggccaagcgttgtttcccctggaaatcgaacc 8141112  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  8141111 cggtattccccga 8141099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 33401801 - 33401912
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    ||||||||||||| | ||||||||||||||||||| ||||  | |||||||||||||||||||  ||||||||| ||||||| || ||| |||| ||| |    
T  33401801 ttcgcatcggttttg-atccactaaaggtgggcgactaatccgactcatgcgtagaggcatgcacactggtcaagtgttgttccccctgaaaatcgaacc 33401899  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  33401900 cggtattccccga 33401912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 453
Target Start/End: Original strand, 1012983 - 1013089
Alignment:
Q  347 atcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgata 446  Q
    ||||||||  |||||||||||||||  ||||||||| |||||||||||||||||||| | ||||| |||  |||||| || |||| ||| ||| ||| ||    
T  1012983 atcggttttcgatccactaaaggtgaacgattaattcggctcatgcgtagaggcatgtgtactggccaagcgttgttccccctgggaatcgaacccggta 1013082  T
Q  447 ttccccg 453  Q
    |||||||    
T  1013083 ttccccg 1013089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 11298268 - 11298337
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| ||||||| || |||| ||||||| |||||||||||||||||||| |||||||||||| |||||    
T  11298268 ttcgcaccggtttccgacccaccaaaggtgagcgattaatttggctcatgcatagaggcatgcgcactgg 11298337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 27976000 - 27975919
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||||||| | || ||||||||||||||||||||||  |||||| ||||||||||||||  |||| |||| |||||||    
T  27976000 ttcgcatcggttcctgacccactaaaggtgggcgattaatccggctcaagcgtagaggcatgcacactgatcaagtgttgtt 27975919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 28033269 - 28033188
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||||||| | || ||||||||||||||||||||||  |||||| ||||||||||||||  |||| |||| |||||||    
T  28033269 ttcgcatcggttcctgacccactaaaggtgggcgattaatccggctcaagcgtagaggcatgcacactgatcaagtgttgtt 28033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 9859999 - 9860106
Alignment:
Q  345 gcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccga 444  Q
    ||||||||||| ||||||| || ||||| ||| |||| ||||||||| ||||||||||||  ||||| ||| ||||||| || |||| ||| ||| |||     
T  9859999 gcatcggtttccgatccaccaatggtggacgactaatctggctcatgtgtagaggcatgcacactggccaagtgttgttccccctgggaatcgaacccgg 9860098  T
Q  445 tattcccc 452  Q
    ||||||||    
T  9860099 tattcccc 9860106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 452
Target Start/End: Original strand, 3418514 - 3418624
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || ||||||||||||| ||| |||| || |||||||||||| ||||||| ||||| ||| ||||||| |  ||  |||| ||| |    
T  3418514 ttcgcaccggtttctgacccactaaaggtggacgactaatctgactcatgcgtagacgcatgcgcactggccaagtgttgttcctcctaaaaatcgaacc 3418613  T
Q  442 cgatattcccc 452  Q
    |||||||||||    
T  3418614 cgatattcccc 3418624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 448
Target Start/End: Complemental strand, 43033010 - 43032904
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||||||| ||||  ||||| || ||||||||||||| ||||| |||  |||||| || |||| ||| |||||    
T  43033010 ttcgcaccggtttctgacccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaatc 43032911  T
Q  442 cgatatt 448  Q
    |||||||    
T  43032910 cgatatt 43032904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 10927715 - 10927646
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||||||||||| || ||||||||||||  ||| ||||  |||||||||||||||||||||| |||||    
T  10927715 ttcgcatcggtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactgg 10927646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 453
Target Start/End: Original strand, 14666099 - 14666183
Alignment:
Q  369 gtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||| |||| |||||  |||||||||||||||| ||||| ||| |||||||||| |||| ||| ||| ||| |||||||||    
T  14666099 gtgggcgactaatctggcttgtgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcgaacccggtattccccg 14666183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 45521277 - 45521167
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||  ||||||| |||| ||||  |||||||||||||||||||||| |||| |||| ||||| |||| |||| ||| ||| |    
T  45521277 ttcgcaccggtttccgacccatcaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactgatcaagtgttg-ttcccctgggaatcgaacc 45521179  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  45521178 cggtattccccg 45521167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 452
Target Start/End: Original strand, 15884557 - 15884666
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||||||| ||||  ||||| |||||||||||||||| ||| | ||| ||||| |||| |||| ||| ||| |    
T  15884557 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcacttgccaagtgttg-ttcccctgggaatcgaacc 15884655  T
Q  442 cgatattcccc 452  Q
    || ||||||||    
T  15884656 cggtattcccc 15884666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 18091485 - 18091427
Alignment:
Q  366 aaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgttt 424  Q
    ||||||||||| ||||| | ||| |||||||||||||||| |||||||||| |||||||    
T  18091485 aaggtgggcgactaattcgcctcgtgcgtagaggcatgcgcactggtcaaacgttgttt 18091427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 455
Target Start/End: Original strand, 35496279 - 35496369
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccgat 455  Q
    |||||||||||||||||   |||| | |||||||||||||| ||||  ||| |||||||||| ||| |||||||| | |||||||| ||||    
T  35496279 aaaggtgggcgattaatccagctcgtacgtagaggcatgcgcactgaccaagtgttgtttcctctgaaaattgaacctgatattcctcgat 35496369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 583921 - 583848
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaa 415  Q
    |||||| |||||||  |||||  |||||||||||| ||||  | |||||||||||||||||||| |||||||||    
T  583921 ttcgcaccggtttctaatccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaa 583848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 423
Target Start/End: Complemental strand, 3568005 - 3567932
Alignment:
Q  350 ggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| || |||| ||||||||  || |||||||||||||||||||||| ||| | ||||||||| |||||||    
T  3568005 ggtttccgacccaccaaaggtggatgactaatttggctcatgcgtagaggtatgtgcactggtcaagtgttgtt 3567932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 449
Target Start/End: Original strand, 4479297 - 4479403
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||| ||| ||||   ||||||||||||||||||||| ||||| |||  |||| |||| |||| ||| |||||    
T  4479297 ttcgcaccggtttccgacccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgttg-ttcccctgggaatcgaatc 4479395  T
Q  442 cgatattc 449  Q
    || |||||    
T  4479396 cggtattc 4479403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 11786017 - 11785962
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgc 404  Q
    ||||||| ||||||  |||| || ||||||||| ||||||||||||||||||||||    
T  11786017 cggtttccgatccatcaaagatgagcgattaatctggctcatgcgtagaggcatgc 11785962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 36662513 - 36662444
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||||||||||| |||||| |||| |||| ||| ||||  || |||| |||||||||||||| |||||    
T  36662513 ttcgcatcggtttccgatccattaaaagtggacgactaatccggttcatacgtagaggcatgcgcactgg 36662444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 40117521 - 40117409
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||  ||||||| |||||||  ||||||||  |||||||||||||||||||||| ||||| |||  |||||| || |||||||| ||||     
T  40117521 ttcgcaccggttttcgatccaccaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaatt 40117422  T
Q  442 cgatattccccga 454  Q
    |||||||||||||    
T  40117421 cgatattccccga 40117409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 42861219 - 42861330
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| |||| || || |||| || ||||| ||||||||  |||||||||||||||||||||| ||||| ||| ||||||||||   |||||||||| |    
T  42861219 ttcgcaccggtctccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttccctgggaaattgaacc 42861318  T
Q  442 cgatattccccg 453  Q
    ||||||||||||    
T  42861319 cgatattccccg 42861330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 1538537 - 1538425
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||||| ||||||||  |||||||||||||||||||||| ||||| ||| ||||||| || |||| ||| ||| |    
T  1538537 ttcgcaccggtttccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 1538438  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  1538437 cggtattccccga 1538425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 365 - 448
Target Start/End: Original strand, 11845825 - 11845908
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatatt 448  Q
    |||||||||||||||||| ||||||| |||||||||||||| ||||| |||| |||||| || || ||||| ||| ||||||||    
T  11845825 aaaggtgggcgattaattcggctcatacgtagaggcatgcgcactggccaaacgttgttccccctcgaaatcgaacccgatatt 11845908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 451
Target Start/End: Complemental strand, 13664366 - 13664257
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| ||  ||| |||||||  |||||||| ||||||||||||||||||||||| ||||| ||| ||||||| || |||  ||| |||||    
T  13664366 ttcgcaccggtttccgacacaccaaaggtgatcgattaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgataatcgaatc 13664267  T
Q  442 cgatattccc 451  Q
    || |||||||    
T  13664266 cggtattccc 13664257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 450
Target Start/End: Complemental strand, 42086433 - 42086325
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||| ||| ||||  |||||||||||||||||||||| |||||||||  |||||| || |||| ||| ||| |    
T  42086433 ttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcgaacc 42086334  T
Q  442 cgatattcc 450  Q
    || ||||||    
T  42086333 cggtattcc 42086325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 15034177 - 15034070
Alignment:
Q  346 catcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgat 445  Q
    |||||||||| ||||||  |||||||| | | ||||  |||||||||||||||||||||  ||||  ||| ||||||||||  ||||||||||| ||| |    
T  15034177 catcggtttccgatccatcaaaggtggacaactaatcaggctcatgcgtagaggcatgcacactgaccaagtgttgtttcccatggaaattgaacccggt 15034078  T
Q  446 attccccg 453  Q
    ||||||||    
T  15034077 attccccg 15034070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 18045744 - 18045682
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    |||||||||||||| |||||||||||||||| ||||||| | |||||||| |||||||||||||    
T  18045744 ttcgcatcggtttccgatccactaaaggtggacgattaa-tcggctcatgtgtagaggcatgcg 18045682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 20525944 - 20525833
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| ||||||| || ||||| ||| ||||  |||||||||||||||||||||| |||||  || ||||||| |  |||| ||| ||| |    
T  20525944 ttcgcaccggtttccgatccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggcgaagtgttgttccacctgggaatcgaacc 20525845  T
Q  442 cgatattccccg 453  Q
    ||||||||||||    
T  20525844 cgatattccccg 20525833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 20682618 - 20682729
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| |||||||  | ||||||||||||| ||||||||  ||||| |||||||||||||||| ||||| |||  |||||| || ||||||||  || |    
T  20682618 ttcgcaccggtttccaacccactaaaggtggtcgattaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatctaacc 20682717  T
Q  442 cgatattccccg 453  Q
    | ||||||||||    
T  20682718 caatattccccg 20682729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 5731921 - 5732032
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || ||||||||||||  ||| |||| |||||||| |||||||||||||| ||||| |||  |||||| |  |||| ||| ||| |    
T  5731921 ttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacc 5732020  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  5732021 cggtattccccg 5732032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 12766237 - 12766175
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgc 404  Q
    |||||| ||||||| || |||| |||||||||||| |||| ||| ||||||||||||||||||    
T  12766237 ttcgcaccggtttctgacccaccaaaggtgggcgactaatctggttcatgcgtagaggcatgc 12766175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 452
Target Start/End: Original strand, 38897728 - 38897829
Alignment:
Q  350 ggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattc 449  Q
    |||||| ||||||| |||||||||| | ||||  ||||| |||||||||||||||| ||||| |||  |||| |||| |||||||| ||| ||| |||||    
T  38897728 ggtttccgatccaccaaaggtgggcaactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttg-ttcccctggaaatcgaacccggtattc 38897826  T
Q  450 ccc 452  Q
    |||    
T  38897827 ccc 38897829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 39099787 - 39099861
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    ||||||| || |||| |||||||||||| ||||  |||||||||||||||||||| | ||||| ||| |||||||    
T  39099787 cggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgtgcactggccaagtgttgtt 39099861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 28857192 - 28857123
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||||||||||||||||| ||||| ||| ||||||| || |||| ||| ||| ||| |||||||||    
T  28857192 ggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccg 28857123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 453
Target Start/End: Original strand, 35561845 - 35561930
Alignment:
Q  368 ggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||| |||| |||| ||||||||| ||||||||||||| ||||||||  ||||||| || |||||| | |||  ||||||||||||    
T  35561845 ggtgagcgactaatctggctcatgtgtagaggcatgcgcactggtcaggtgttgttccctctggaagtcgaactcgatattccccg 35561930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 450
Target Start/End: Complemental strand, 20705637 - 20705561
Alignment:
Q  374 cgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcc 450  Q
    |||||||| || || ||||||||||||||||| ||||  |||| ||||||  | ||| |||||||||||||||||||    
T  20705637 cgattaatctgccttatgcgtagaggcatgcgcactgaccaaacgttgttctccctgaaaattgaatccgatattcc 20705561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 8513625 - 8513514
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||| ||| |||| |||||| |||||||||||||| | ||||| |||   |||||||| || | ||| ||| |    
T  8513625 ttcgcaccggtttccgacccaccaaaggtggacgactaatctggctcgtgcgtagaggcatgtgcactggccaagcattgtttcccctaggaatcgaacc 8513526  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  8513525 cggtattccccg 8513514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 449
Target Start/End: Complemental strand, 9805110 - 9805003
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| | ||||| || |||| |||||||| ||| ||||  |||||||||||||||||||||| ||||| |||  |||||| || |||| ||| ||| |    
T  9805110 ttcgcacctgtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacc 9805011  T
Q  442 cgatattc 449  Q
    || |||||    
T  9805010 cggtattc 9805003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 452
Target Start/End: Original strand, 14588641 - 14588728
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcccc 452  Q
    |||||||| ||| ||||  |||||||||||||||||||||| |||||||||  ||| || |  ||| |||| ||| ||||||||||||    
T  14588641 aaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttattcctcctgaaaatcgaacccgatattcccc 14588728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 14974343 - 14974406
Alignment:
Q  360 ccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||| |||||||| ||| ||||  |||||||||||||||||||| | ||||| |||||||||||    
T  14974343 ccaccaaaggtggacgactaatccggctcatgcgtagaggcatgtgcactggccaaatgttgtt 14974406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 16757484 - 16757421
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    |||||||||||||| || ||||||||| ||| |||||||||   || |||||||||||||||||    
T  16757484 ttcgcatcggtttctgacccactaaagatggacgattaattcaacttatgcgtagaggcatgcg 16757421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 37263346 - 37263283
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    |||||| ||||||| |||||| ||||||||| ||| ||||  ||||| ||||||||||||||||    
T  37263346 ttcgcaccggtttccgatccaataaaggtggacgactaatccggctcgtgcgtagaggcatgcg 37263283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 20255452 - 20255394
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||| ||| ||||  | |||||||||||||||||||| ||||||||| |||||||    
T  20255452 aaaggtggacgactaatccgactcatgcgtagaggcatgcgcactggtcaagtgttgtt 20255394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 404
Target Start/End: Original strand, 27648426 - 27648488
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgc 404  Q
    |||||||||||||| ||||||| |||| ||| ||| ||||  ||||||| |||||||||||||    
T  27648426 ttcgcatcggtttccgatccaccaaagatggacgactaatccggctcatacgtagaggcatgc 27648488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 439
Target Start/End: Original strand, 35245030 - 35245104
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaa 439  Q
    |||||||||| | ||||  |||||||||||||| ||||||  |||||||||| |||||| || ||| ||||||||    
T  35245030 aaaggtgggcaactaatcaggctcatgcgtagaagcatgcacactggtcaaacgttgttccctctgaaaattgaa 35245104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 12705120 - 12705047
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaa 415  Q
    |||||| ||||||| || |||| |||||||||||| ||||  || ||||||||||| ||||||  |||||||||    
T  12705120 ttcgcaccggtttctgacccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacactggtcaa 12705047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 19572788 - 19572719
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||||||||||||||||| ||||| ||| ||||||| || |||| |||  || ||| |||||||||    
T  19572788 ggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatctaacccggtattccccg 19572719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 21375413 - 21375376
Alignment:
Q  386 ctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  21375413 ctcatgcgtagaagcatgcgcactggtcaaatgttgtt 21375376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 38578868 - 38578979
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||||||| ||||  |||||||||||||||||||||| ||||| |||  |||||| || |||| ||| ||| |    
T  38578868 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacc 38578967  T
Q  442 cgatattccccg 453  Q
    ||||||||||||    
T  38578968 cgatattccccg 38578979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 42210263 - 42210371
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||| || |||||| |||||||  ||||| |||||||||||||||| ||||| |||| ||||||| |||||| ||| ||| |    
T  42210263 ttcgcatcggtttccgacccaccaacggtgggtgattaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttttcactgggaatcgaagc 42210362  T
Q  442 cgatattcc 450  Q
    || ||||||    
T  42210363 cggtattcc 42210371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 3353532 - 3353448
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||||| ||||||| ||||||  |||||||| ||| ||||  ||||| |||||||||||||||| ||||| ||||||||||||||    
T  3353532 ttcgcaccggtttctgatccatcaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaaatgttgtttcc 3353448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 13095959 - 13095855
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatatt 448  Q
    ||||||| || |||| ||||||| |||| ||||  |||||||||||||||||||||| ||||| ||| ||||||| || |||| ||| ||| ||| ||||    
T  13095959 cggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatagaacccggtatt 13095860  T
Q  449 ccccg 453  Q
    |||||    
T  13095859 ccccg 13095855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 452
Target Start/End: Complemental strand, 22573888 - 22573811
Alignment:
Q  374 cgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcccc 452  Q
    ||||||||  |||||||||||| ||||||||| ||||||||||||||| |||| ||| |||| ||| ||||||||||||    
T  22573888 cgattaatccggctcatgcgtaaaggcatgcgcactggtcaaatgttg-ttcccctgaaaatcgaacccgatattcccc 22573811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 19914727 - 19914767
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  19914727 aaaggtgggcgattaatctggctcatgcgtagaggcatgcg 19914767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 10047877 - 10047988
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||||| ||| |||||  |||||||||||||||| |||| ||||| ||| ||||||| || |||| ||| ||| |    
T  10047877 ttcgcaccggtttccgacccaccaatggtggacgactaattctgctcatgcgtagaggcctgcgcactggccaagtgttgttccccctgggaatcgaacc 10047976  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  10047977 cggtattccccg 10047988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 48804791 - 48804680
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||||| ||| ||||  |||||||||||||||||||||| ||||| ||| ||||||| ||  ||| ||| ||| |    
T  48804791 ttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccttgggaatcgaacc 48804692  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  48804691 cggtattccccg 48804680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 452
Target Start/End: Original strand, 27875089 - 27875199
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||  || ||||||||||||| ||| ||||  | |||||||||||||||||| | ||||| ||| |||| || || |||| ||| |||||    
T  27875089 ttcgcaccggttttcgacccactaaaggtggacgactaatgcgactcatgcgtagaggcatgtgcactggccaagtgttattccccctgggaatcgaatc 27875188  T
Q  442 cgatattcccc 452  Q
    || ||||||||    
T  27875189 cggtattcccc 27875199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 29805460 - 29805522
Alignment:
Q  361 cactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||||| | ||||||||||||||||||||||||| |||||| ||||  |||| ||||||    
T  29805460 cactaaaggtagacgattaatttggctcatgcgtagagacatgcgcactgaccaaacgttgtt 29805522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 452
Target Start/End: Original strand, 43861973 - 43862083
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||  ||||||| |||||||   || ||||  |||||||||||||||||||||| ||||| |||| |||||| || |||| ||| ||| |    
T  43861973 ttcgcaccggttttcgatccaccaaaggtgaatgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgggaatcgaacc 43862072  T
Q  442 cgatattcccc 452  Q
    || ||||||||    
T  43862073 cggtattcccc 43862083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 1606049 - 1605956
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaat 435  Q
    |||||| ||||||| ||||||| |||||||||||| ||||  |||||| || |||||||||| | ||||| |||  |||||| || ||||||||    
T  1606049 ttcgcaccggtttccgatccaccaaaggtgggcgactaatccggctcaagcctagaggcatgtgcactggccaagcgttgttccccctggaaat 1605956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 27028387 - 27028294
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaat 435  Q
    |||||| ||||||| || |||| ||||||| |||| ||||   ||||||| ||||||||||||| ||||| ||| ||||||| || ||||||||    
T  27028387 ttcgcaccggtttccgacccaccaaaggtgagcgactaatccagctcatgtgtagaggcatgcgcactggccaagtgttgttccccctggaaat 27028294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 8734687 - 8734755
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactg 410  Q
    |||||| ||||||| || |||| |||||||||||| |||| |||||| ||||| |||||||||| ||||    
T  8734687 ttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgttgaggcatgcgcactg 8734755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 17748383 - 17748495
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||  |||||||| ||| ||||  ||||| | |||||||||||||| ||||| |||  |||||| || |||| ||| ||| |    
T  17748383 ttcgcatcggtttccgacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacc 17748482  T
Q  442 cgatattccccga 454  Q
    || ||||||||||    
T  17748483 cggtattccccga 17748495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 4195203 - 4195314
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    ||||||||||||||  | |||| || ||||| ||  ||||  |||||||||||||||||||||| ||| | ||||||||||| |  |||||||| |||      
T  4195203 ttcgcatcggtttccaacccaccaatggtggacggctaatccggctcatgcgtagaggcatgcgcactagccaaatgttgttcctcctggaaatcgaact 4195302  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  4195303 cggtattccccg 4195314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 404
Target Start/End: Original strand, 5069816 - 5069878
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgc 404  Q
    |||||||||||||| || |||| |||||||||||| ||||  ||||  |||||||||||||||    
T  5069816 ttcgcatcggtttccgacccaccaaaggtgggcgactaatccggcttgtgcgtagaggcatgc 5069878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 403
Target Start/End: Complemental strand, 21530849 - 21530795
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatg 403  Q
    ||||||| || |||| ||||||| |||||||||| ||||| ||||||||||||||    
T  21530849 cggtttccgacccaccaaaggtgagcgattaattcggctcgtgcgtagaggcatg 21530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 454
Target Start/End: Complemental strand, 22974068 - 22973963
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatatt 448  Q
    ||||||| || |||| |||||||| ||| |||| ||||||||||||||| ||||||  ||||| |||  |||||| || |||  ||| ||| ||| ||||    
T  22974068 cggtttctgacccaccaaaggtggacgactaatctggctcatgcgtagacgcatgcacactggccaagcgttgttccccctgagaatcgaacccggtatt 22973969  T
Q  449 ccccga 454  Q
    ||||||    
T  22973968 ccccga 22973963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 423
Target Start/End: Original strand, 45960000 - 45960085
Alignment:
Q  338 ggcattcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| ||| ||||||| ||||||  ||||||| |||| ||||  |||| ||||||||||||||||| ||||  ||| |||||||    
T  45960000 ggcatttgcaccggtttccgatccatcaaaggtgagcgactaatccggcttatgcgtagaggcatgcgcactgaccaagtgttgtt 45960085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 452
Target Start/End: Original strand, 36619297 - 36619365
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattcccc 452  Q
    |||||||||||||||||||||  ||||| ||| ||||||| || |||| ||| ||| ||| ||||||||    
T  36619297 ggctcatgcgtagaggcatgcacactggacaagtgttgttccccctgggaatcgaacccggtattcccc 36619365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 43925577 - 43925509
Alignment:
Q  385 gctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    ||||||||||||||||||||| ||||  ||| ||||||| || |||| ||| ||| ||| |||||||||    
T  43925577 gctcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcgaacccggtattccccg 43925509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 53599170 - 53599059
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| |||||||||||||||  ||||||||  |||||||||||||||||||||| ||||| |||| |||||| |  |||| ||| ||| |    
T  53599170 ttcgcaccggtttccgatccactaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttcctcctgggaatcgaacc 53599071  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  53599070 cggtattccccg 53599059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 450
Target Start/End: Complemental strand, 10541125 - 10541018
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| ||||||  |||||||| |||||||| |||||| |||||||||||||||  ||||| |||  ||||||||| |||||||| ||| |    
T  10541125 ttcgcaccggtttccgatccatcaaaggtgg-cgattaatctggctcgtgcgtagaggcatgcacactggccaagcgttgtttcccctggaaatcgaacc 10541027  T
Q  442 cgatattcc 450  Q
    |||||||||    
T  10541026 cgatattcc 10541018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 38075543 - 38075459
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||||||||||||| || |||| |||||||| | ||||||| |||||||||||||||||||||| ||||| |||  |||||||||    
T  38075543 ttcgcatcggtttccgacccaccaaaggtggacaattaattcggctcatgcgtagaggcatgcgcactggccaagcgttgtttcc 38075459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 24166560 - 24166476
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||||| ||||||| ||||||  ||||||||| || |||| |||||| |||||||||||||||| ||||| |||| |||||||||    
T  24166560 ttcgcaccggtttccgatccatcaaaggtgggtgactaatctggctcgtgcgtagaggcatgcgcactggccaaacgttgtttcc 24166476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 429
Target Start/End: Original strand, 7246647 - 7246734
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccact 429  Q
    |||||| ||||||| || |||| |||||||||||| ||||  |||||||||||||||||||||| ||||| |||  |||||| |||||    
T  7246647 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcccact 7246734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 29895897 - 29895786
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| || ||||| ||| ||||  |||||||||||||||||||||| ||||| ||| ||||||| || |||| ||| ||| |    
T  29895897 ttcgcaccggtttccgaaccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 29895798  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  29895797 cggtattccccg 29895786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 55921144 - 55921033
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| ||||||| |||||||||  ||||||| |||||||||||||| ||||  ||| ||||||| || |||| ||| ||| |    
T  55921144 ttcgcaccggtttccgacccaccaaaggtgagcgattaatccggctcatacgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcgaacc 55921045  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  55921044 cggtattccccg 55921033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 452
Target Start/End: Complemental strand, 52950192 - 52950082
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||||||| || |||| |||||||| ||| |||| ||| ||||| |||||| |||||| ||||| |||  |||||| || |||| ||| ||| |    
T  52950192 ttcgcatcggtttccgacccaccaaaggtggacgactaatctggttcatgtgtagagtcatgcgcactggccaagcgttgttccccctgggaatcgaacc 52950093  T
Q  442 cgatattcccc 452  Q
    |||||||||||    
T  52950092 cgatattcccc 52950082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 20421851 - 20421790
Alignment:
Q  374 cgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaat 435  Q
    |||||||| ||||||||||||||||||||||| ||||| ||| ||||||| || ||||||||    
T  20421851 cgattaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctggaaat 20421790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 24850628 - 24850709
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||||||||||| |||||| ||| |||||  || ||||   ||||||||||||||||||||| ||||||||| |||||||    
T  24850628 ttcgcatcggtttccgatccaataatggtggatgaataatccagctcatgcgtagaggcatgcgcactggtcaagtgttgtt 24850709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 454
Target Start/End: Complemental strand, 30317339 - 30317231
Alignment:
Q  346 catcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgat 445  Q
    |||||||||| || |||| |||||||||||| ||||| ||||| ||||||||||||| || ||||| |||  |||||| || |||  ||| ||| | |||    
T  30317339 catcggtttccgacccaccaaaggtgggcgactaattcggctcgtgcgtagaggcattcgtactggccaagcgttgttccctctgagaatcgaacctgat 30317240  T
Q  446 attccccga 454  Q
    |||||||||    
T  30317239 attccccga 30317231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 36145216 - 36145327
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| ||| ||  |||||||| ||| ||||  |||||||| ||||||||||||| |||| ||||  ||||||||| |||| ||| ||| |    
T  36145216 ttcgcaccggtttccgattcatcaaaggtggacgactaatccggctcatgtgtagaggcatgcgcactgatcaagcgttgtttcccctgggaatcgaacc 36145315  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  36145316 cggtattccccg 36145327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 423
Target Start/End: Complemental strand, 46108798 - 46108720
Alignment:
Q  345 gcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    ||||||||||| || |||  ||| |||| ||| |||| ||||||||||||||||||||||| ||| | |||||||||||    
T  46108798 gcatcggtttccgacccatcaaaagtggacgactaatctggctcatgcgtagaggcatgcgcactagccaaatgttgtt 46108720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 1446894 - 1446825
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    |||||||||||||||||||||| ||||| ||| ||||||| || |||| ||| ||| ||| |||||||||    
T  1446894 ggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccg 1446825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 8424664 - 8424583
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    ||||||||| |||  || |||| |||| || |||||||||||||||| ||| |||||||||||| ||||| |||| ||||||    
T  8424664 ttcgcatcgattttcgacccaccaaagatgagcgattaatttggctcgtgcatagaggcatgcgcactggccaaacgttgtt 8424583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 31588796 - 31588727
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||||||||||| ||||||| ||| ||| |||| ||||  ||||||||||||||| |||||| |||||    
T  31588796 ttcgcatcggtttccgatccaccaaaagtgagcgactaatccggctcatgcgtagagacatgcgcactgg 31588727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 40780862 - 40780930
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactg 410  Q
    |||||| ||||||| || |||| |||||||| ||| ||||  |||||||||||||||||||||| ||||    
T  40780862 ttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactg 40780930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 50486050 - 50485990
Alignment:
Q  345 gcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    ||||||||||| || ||||||| ||||||||| ||||  ||||| ||||||||||||||||    
T  50486050 gcatcggtttccgacccactaatggtgggcgactaatccggctcgtgcgtagaggcatgcg 50485990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 449
Target Start/End: Complemental strand, 6779321 - 6779214
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||||||| ||| ||| ||| |||||||| ||| ||||  ||||||||| |||||||||||| ||||| ||  ||||||| || |||| ||| ||| |    
T  6779321 ttcgcatcgggttccgattcaccaaaggtggacgactaatccggctcatgcatagaggcatgcgcactggccaggtgttgttccccctgggaatcgaacc 6779222  T
Q  442 cgatattc 449  Q
    || |||||    
T  6779221 cggtattc 6779214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 449
Target Start/End: Complemental strand, 16450410 - 16450303
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || | || |||||||| ||| |||| ||||||||||||||||||||| | ||||| |||  |||||| || |||| ||| ||| |    
T  16450410 ttcgcaccggtttccgacctaccaaaggtggacgactaatctggctcatgcgtagaggcatgtgcactggccaagcgttgttccccctgggaatcgaacc 16450311  T
Q  442 cgatattc 449  Q
    | ||||||    
T  16450310 caatattc 16450303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 411
Target Start/End: Original strand, 20532420 - 20532479
Alignment:
Q  352 tttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||| ||||||| |||||||||||| | ||  |||||||||||||||||||||| |||||    
T  20532420 tttccgatccaccaaaggtgggcgacttatccggctcatgcgtagaggcatgcgcactgg 20532479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 42722578 - 42722689
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||  || ||||||||||||  ||| ||||  |||||||||||||||||||||| ||||| |||  |||||| |  |||| ||||||| |    
T  42722578 ttcgcaccggttttcgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaattgaacc 42722677  T
Q  442 cgatattccccg 453  Q
    || |||| ||||    
T  42722678 cggtatttcccg 42722689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 452
Target Start/End: Complemental strand, 2559417 - 2559307
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| |||||||| ||| ||||  ||||  |||||||||||||||| ||||| |||  |||||| |  || ||||| |||||    
T  2559417 ttcgcaccggtttccgacccaccaaaggtggacgagtaatccggcttgtgcgtagaggcatgcgcactggccaagcgttgttcctcctagaaatcgaatc 2559318  T
Q  442 cgatattcccc 452  Q
    || ||||||||    
T  2559317 cggtattcccc 2559307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 426
Target Start/End: Original strand, 5472867 - 5472933
Alignment:
Q  360 ccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    |||| |||||||||||| ||||  ||||| |||||||||||||||| ||||| |||  |||||||||    
T  5472867 ccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttcc 5472933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 450
Target Start/End: Complemental strand, 21429413 - 21429303
Alignment:
Q  340 cattcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaa 439  Q
    |||||||| ||||||| || |||| |||||||| ||| || | || ||| |||||||||||||||| |||||  ||| |||||| || ||  |||| |||    
T  21429413 cattcgcaccggtttccgacccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcactggctaaacgttgttccccctaaaaatcgaa 21429314  T
Q  440 tccgatattcc 450  Q
     ||||||||||    
T  21429313 cccgatattcc 21429303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 26479982 - 26480028
Alignment:
Q  374 cgattaatttggctcatgcgtagaggcatgcggactggtcaaatgtt 420  Q
    ||||||||| |||||||||||||||||||||| ||||| ||| ||||    
T  26479982 cgattaattcggctcatgcgtagaggcatgcgtactggccaagtgtt 26480028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 453
Target Start/End: Original strand, 295532 - 295644
Alignment:
Q  340 cattcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaa 439  Q
    |||||||| |||||||  | |||| || ||||| ||| |||| ||| || |||||||||||||||| ||||| |||| |||| |||| |||| ||| |||    
T  295532 cattcgcaccggtttcaaacccaccaacggtggacgactaatctggttcgtgcgtagaggcatgcgcactggccaaacgttg-ttcctctgggaatcgaa 295630  T
Q  440 tccgatattccccg 453  Q
    || | |||||||||    
T  295631 tctggtattccccg 295644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 4738728 - 4738659
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| ||||||| || |||| |||||||| ||| |||||  |||||||||||||| |||||| |||||    
T  4738728 ttcgcaccggtttccgacccaccaaaggtggacgactaattcagctcatgcgtagagacatgcgcactgg 4738659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 12703550 - 12703639
Alignment:
Q  346 catcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaat 435  Q
    |||||||||| |||||  ||||| ||||||| ||||  |||| |||||||||| ||| |  |||||||||  |||||| |||||||||||    
T  12703550 catcggtttccgatcctttaaagatgggcgactaatccggcttatgcgtagagacatacacactggtcaagcgttgttcccactggaaat 12703639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 17080153 - 17080084
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| ||||||  ||||||  ||||||| |||| ||||  |||||||||||||||||||||| |||||    
T  17080153 ttcgcaccggttttcgatccatcaaaggtgtgcgactaatccggctcatgcgtagaggcatgcgcactgg 17080084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 38166137 - 38166068
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactgg 411  Q
    |||||| ||||||| || |||| |||||||||||| ||||  ||||| ||||||||| |||||| |||||    
T  38166137 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactgg 38166068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 54946352 - 54946291
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactg 410  Q
    ||||||| || |||| || | ||||||| ||||  |||||||||||||||||||||||||||    
T  54946352 cggtttccgacccaccaatgatgggcgactaatccggctcatgcgtagaggcatgcggactg 54946291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 433
Target Start/End: Original strand, 3159477 - 3159561
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaa 433  Q
    ||||||| || |||| || |||| |||| |||| |||||| |||||||||||||||| ||||| |||  |||||| || ||||||    
T  3159477 cggtttccgacccaccaatggtgagcgactaatctggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaa 3159561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 8064841 - 8064877
Alignment:
Q  384 ggctcatgcgtagaggcatgcggactggtcaaatgtt 420  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  8064841 ggctcatgcgtagaggcatgcgcactggtcaagtgtt 8064877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 8889125 - 8889021
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatatt 448  Q
    ||||||| || |||| |||||||| ||| ||||  ||||||||||||||| |||||| ||||  ||| ||||||| || || | ||| ||| ||| ||||    
T  8889125 cggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagagccatgcgcactgcccaagtgttgttccccctaggaatcgaacccggtatt 8889026  T
Q  449 ccccg 453  Q
    |||||    
T  8889025 ccccg 8889021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 27248513 - 27248473
Alignment:
Q  365 aaaggtgggcgattaatttggctcatgcgtagaggcatgcg 405  Q
    |||||||||||| |||| |||||| ||||||||||||||||    
T  27248513 aaaggtgggcgactaatctggctcctgcgtagaggcatgcg 27248473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 40272379 - 40272443
Alignment:
Q  389 atgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattccccg 453  Q
    ||||||||||||||||| ||||| |||  |||||| ||  ||||||| ||| |||||||||||||    
T  40272379 atgcgtagaggcatgcgcactggccaagcgttgttccccatggaaatcgaacccgatattccccg 40272443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 6963 - 6852
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| ||||||| |||| ||||  |||||||||||||||||||||| ||||| ||| ||||||| || |||| ||| ||| |    
T  6963 ttcgcaccggtttccgacccaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacc 6864  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  6863 cggtattccccg 6852  T

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Target: scaffold0316 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 452
Target Start/End: Original strand, 1615 - 1725
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||  || |||| |||||||||||| |||||||||||||||||||||||||||| |||||  ||  |||||| || |||||||| ||| |    
T  1615 ttcgcaccggttttcgacccaccaaaggtgggcgactaatttggctcatgcgtagaggcatgcgcactggctaatcgttgttccccctggaaatcgaacc 1714  T
Q  442 cgatattcccc 452  Q
     | ||||||||    
T  1715 tggtattcccc 1725  T

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Target: scaffold0170 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 9945 - 9845
Alignment:
Q  350 ggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatccgatattc 449  Q
    |||||| || |||| |||||||| ||| ||||  ||||| |||||||||||||||| ||||| |||  |||||| || |||||||| ||||||| |||||    
T  9945 ggtttctgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaatccggtattc 9846  T
Q  450 c 450  Q
    |    
T  9845 c 9845  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 678 - 567
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    |||||| ||||||| || |||| ||||||| |||| |||| |||||||| |||||||||||||  |||| |||| ||||||| || |||  ||| ||| |    
T  678 ttcgcaccggtttccgacccaccaaaggtgagcgactaatctggctcatacgtagaggcatgcacactgatcaagtgttgttccccctgcgaatcgaacc 579  T
Q  442 cgatattccccg 453  Q
    || |||||||||    
T  578 cggtattccccg 567  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 95008 - 95066
Alignment:
Q  368 ggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttcc 426  Q
    ||||||||| ||||  |||||||||||| ||||||||| |||||||||| |||||||||    
T  95008 ggtgggcgactaatccggctcatgcgtaaaggcatgcgcactggtcaaacgttgtttcc 95066  T

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Target: scaffold0004; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 420
Target Start/End: Original strand, 7843 - 7914
Alignment:
Q  349 cggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgtt 420  Q
    ||||||| ||||||| |||||||||||| ||||   ||| ||||||||||||||||| ||||| ||| ||||    
T  7843 cggtttccgatccaccaaaggtgggcgactaatccagctaatgcgtagaggcatgcgcactggccaagtgtt 7914  T

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Target: scaffold0209 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 12681 - 12608
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaa 415  Q
    |||||| |||||||  |||||  |||||||||||| ||||  | |||||||||||||||||||| |||||||||    
T  12681 ttcgcaccggtttctaatccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaa 12608  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 25193 - 25112
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtt 423  Q
    |||||| ||||||| ||||||| |||||||| |||||||| ||  |||||||||||  |||||| ||||  |||||||||||    
T  25193 ttcgcaccggtttccgatccaccaaaggtggacgattaatctgattcatgcgtagaaacatgcgcactgtccaaatgttgtt 25112  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 42833 - 42901
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactg 410  Q
    |||||| ||||||| || |||| |||||||||||| ||||  |||||||| ||||||||||||| ||||    
T  42833 ttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactg 42901  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 9550 - 9495
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtaga 397  Q
    |||||| ||||||| || |||| |||||||| ||| ||||||||||||||||||||    
T  9550 ttcgcaccggtttctgacccaccaaaggtggacgactaatttggctcatgcgtaga 9495  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 451
Target Start/End: Complemental strand, 16987 - 16878
Alignment:
Q  342 ttcgcatcggtttcggatccactaaaggtgggcgattaatttggctcatgcgtagaggcatgcggactggtcaaatgttgtttccactggaaattgaatc 441  Q
    ||||||||||||||  | |||| ||||||| |||| |||| |||||| ||||||||| ||| || ||||  |||  ||||||||| |||  ||||||| |    
T  16987 ttcgcatcggtttccaacccaccaaaggtgagcgactaatctggctcgtgcgtagagacatacgcactgaccaagcgttgtttcccctgagaattgaacc 16888  T
Q  442 cgatattccc 451  Q
    | ||||||||    
T  16887 caatattccc 16878  T

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