View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_17 (Length: 470)
Name: NF18173_low_17
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 24261027 - 24260584
Alignment:
| Q |
17 |
agataatattgagtagaaaaacaaagtttgcttgtaaattatattcagtcattataaactcatgatcaccgataactatcttcaaaattggataaagtga |
116 |
Q |
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| T |
24261027 |
agataatattgagtagaaaaacaaagtttgcttgtaaattatgttcagtcattataaactcatgatcaccgataactatcttcaaaattggataaagtga |
24260928 |
T |
|
| Q |
117 |
ggtgatatat-ggaaaccatgtacgacctaatcagacatgttattaaaaactataaaattagaaatcattgtatcacatcatgatataatgtcgaataga |
215 |
Q |
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| T |
24260927 |
ggtgatatattggaaaccatgtacgacctaatcagacatgttattaaaaactataaaattagaaatcattgtatcacatcatgatataatgtcgaataga |
24260828 |
T |
|
| Q |
216 |
tatgccataaaatggacattaattcatgataaacttctgaactgcaacaaagaagtttaaacactaaaactacgataacactgtcactacacaattttaa |
315 |
Q |
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| T |
24260827 |
tatgccataaaatggacattaattcatgataaacttctgaactgcaacaaagaaatttaaacactaaaactgcgacaacactatcactacgcaattttaa |
24260728 |
T |
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| Q |
316 |
tagaaaatacttaaagctaatgtaagttcgaaaacaacagaaaatattcaaaatcattacaacgcatatttgacacttcaatgttatgaataaaaactaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24260727 |
aagaaaatacttaaagctaatgtaagttcgaaaacaacagaaaatattcaaaatcattacaacgcatatttgacacttcaatgttatgaataaaaactaa |
24260628 |
T |
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| Q |
416 |
tttttcctcggtttggtgcacctattttgattccagttccttca |
459 |
Q |
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| T |
24260627 |
tttttcctcggtttggtgcgcctattttgattccagttccttca |
24260584 |
T |
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