View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_18 (Length: 456)
Name: NF18173_low_18
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 4542854 - 4543287
Alignment:
| Q |
8 |
cgaagaaaatcaacatcactaccagaacagaaatcagaaagtaagatacaaccataataaagtggatatcaacctcaatctataacccaaaattagcacc |
107 |
Q |
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| T |
4542854 |
cgaacaaaatcaacatcactaccagaacagaaatcagaaagtaagatacaaccataataaagtggatatcatcctcaatctataacccaaaattagcacc |
4542953 |
T |
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| Q |
108 |
aattaaacattagtaacttgcgatcaagtttagcatctacaaatgaagtttcataaatatatacataagttcgaaatatacatacctgactagggatttg |
207 |
Q |
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| T |
4542954 |
aattaaacattggtaacttgcgatcaagtttagcatctacaaatgaagtttcataaatatatacataagttcgaaatatacatacctgactagggatttg |
4543053 |
T |
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| Q |
208 |
cctcttataaaaaacagatgaaggaggaaaatgagcttgatatgaaggagttggatgaacatacacactataacgactctcatgccctttcaaaaacctc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4543054 |
cctcttataaaaaacagatgaaggaggaaaatgagcttgatatgaaggagttggatgaacatacacactataacgactctcatgccctttcaaaaacctc |
4543153 |
T |
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| Q |
308 |
tcccaaactggtgcaagaggcaatggtcctttagtaagaaacataaaagcaatcttaggaactctttcaaaagggtaattcttaatcttaggaaccaaag |
407 |
Q |
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| T |
4543154 |
tcccaaactggtgcaagaggcaatggtcctttagtaagaaacataaaagcaatcttaggaactctttcaaaagggtaattcttaatcttaggaaccaaag |
4543253 |
T |
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| Q |
408 |
aagctctccaaagaagttctttgtcactcatatt |
441 |
Q |
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| T |
4543254 |
aagctctccaaagaagttctttgtcactcatatt |
4543287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 417
Target Start/End: Complemental strand, 5065684 - 5065552
Alignment:
| Q |
285 |
tctcatgccctttcaaaaacctctcccaaactggtgcaagaggcaatggtcctttagtaagaaacataaaagcaatcttaggaactctttcaaaagggta |
384 |
Q |
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| T |
5065684 |
tctcatgccccttaaagaacttctcccaaagtggtgccattggcaaaggtcccttagtcaagaacatgaaagcaatcttaggagttcttttaaaaggata |
5065585 |
T |
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| Q |
385 |
attcttaatcttaggaaccaaagaagctctcca |
417 |
Q |
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| T |
5065584 |
attcttaatccttggaacaaaagaagccctcca |
5065552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 25520002 - 25520046
Alignment:
| Q |
15 |
aatcaacatcactaccagaacagaaatcagaaagtaagatacaac |
59 |
Q |
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| T |
25520002 |
aatcaacatcaccaccagaacggaaatcagaaagtaagatacaac |
25520046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 36832907 - 36832829
Alignment:
| Q |
13 |
aaaatcaacatcactaccagaacagaaatcagaaagtaagatacaaccataataaagtggatatcaacctcaatctataaccc |
95 |
Q |
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|||||||||||||| ||||||||||||||| |||||||| || || |||||||||| |||||| | ||||| ||||||| |
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| T |
36832907 |
aaaatcaacatcaccaccagaacagaaatc----agtaagatgcatccctaataaagtgcatatcaggcacaatcaataaccc |
36832829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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