View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_21 (Length: 431)
Name: NF18173_low_21
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 414
Target Start/End: Original strand, 33353985 - 33354387
Alignment:
| Q |
12 |
tatacttgcattctctaatcctattgtccaagagcattttcagttcaaaagtgagtgtgcaatgcggataatttttctggttttgatgcagacagtattg |
111 |
Q |
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| T |
33353985 |
tatacttgcattctctaatcctattgtccaagagcatttttagttcaaaagtgggtgtgcaatgcagataatttttctggttttgatgcagacagtattg |
33354084 |
T |
|
| Q |
112 |
ctgcaaagatttttggatgtaataataatgttgacatgaaactcgtgctcgagaaacttaaacataaaatagatagacttggatgtttgatcttattgga |
211 |
Q |
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| T |
33354085 |
ctgcaaagatttttgggtgtaataataatgttgacatggaactcgtgctcgagaaacttaaacataaaatagatggacttggatgtttgatcttattgga |
33354184 |
T |
|
| Q |
212 |
tgatgtatgtagtgagagtcgtcaagattgggatcaattgttggaaattgcaaggtcgattgtgattcaaggctttannnnnnngacaaagtacgagatt |
311 |
Q |
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| T |
33354185 |
tgatgtatgtagtgagagtcatcaagattgggatcaattgttggaaattgcaaggtcgattgtgattcaagcctttattttttcgacaaaatacgagatt |
33354284 |
T |
|
| Q |
312 |
caaacatgaaaagatcaaaaataagaaaattataattgttcaaattatatacgtgatataattaaaatgaggaatggaaagattgactttggagaagaaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33354285 |
caaacatgaaaagatcaaaaataagaaaattataattgttcaaattatatacgtgatataattaaaatgaggaatggaaagatagactttggagaagaaa |
33354384 |
T |
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| Q |
412 |
aaa |
414 |
Q |
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| T |
33354385 |
aaa |
33354387 |
T |
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