View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_22 (Length: 429)
Name: NF18173_low_22
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Original strand, 3592144 - 3592521
Alignment:
| Q |
11 |
cacagattctaatcagtaccaaagatcaatcagaaggtaataatgaagagtttggtattggtaatggcatgtttctgagttcatctatgccctttcatca |
110 |
Q |
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| T |
3592144 |
cacagaatctaatcagtaccaaagatcaatcagaaggtaataatgaagagtttggtattggtaatggcatgtttctgagttcatctatgccctttcatca |
3592243 |
T |
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| Q |
111 |
aaaccaaagctttatattcccattctcaaactcaagcactttaaggtcaactaatggatataactatggtgatgaagagtttaaaataatggaggagtca |
210 |
Q |
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| T |
3592244 |
aaaccaaagctttatattcccattctcaaactcaagcactttaaggtcaaataatggatataactatggtgatgaagagtttaaaataatggaggagtca |
3592343 |
T |
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| Q |
211 |
actattaacaacagtgcaatgccaagcactagtgggagtggcactattacacagccatgggagatacctgcaacaagtagtggaatggatatgtcaaact |
310 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592344 |
actattaacaacagtgcaatgccaagcactagtggtagtggcactattacacagccatgggagatacctgcaacaagtagtggaatggatatgtcaaact |
3592443 |
T |
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| Q |
311 |
attggagttgggaggatattgattctttggtctcaactgatctaaatgttccttgggatgattctgatatcaaacctt |
388 |
Q |
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| T |
3592444 |
attggagttgggaggatattgattctttggtctcaactgatctaaatgttccttgggatgattctgatatcaaacctt |
3592521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 388
Target Start/End: Original strand, 35722336 - 35722446
Alignment:
| Q |
281 |
caacaagtagtggaatggatatgtcaaactattggagttgggaggatattgattctttggtctcaactgatctaaatgttcc---ttgggatgattctga |
377 |
Q |
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|||||||| |||| ||||| | ||||| ||||||| |||||| || |||||||| ||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
35722336 |
caacaagtggtggcatggaaagttcaaagtattggaattgggaagacattgattcattggtttcaactgatctaaagaatccttattgggatgattctga |
35722435 |
T |
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| Q |
378 |
tatcaaacctt |
388 |
Q |
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||||||||||| |
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| T |
35722436 |
tatcaaacctt |
35722446 |
T |
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