View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18173_low_25 (Length: 409)

Name: NF18173_low_25
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18173_low_25
NF18173_low_25
[»] chr7 (5 HSPs)
chr7 (1-390)||(27651518-27651909)
chr7 (23-98)||(4674876-4674952)
chr7 (54-143)||(43208669-43208758)
chr7 (54-119)||(32988581-32988646)
chr7 (54-106)||(33362476-33362527)
[»] chr2 (5 HSPs)
chr2 (1-106)||(16576208-16576315)
chr2 (24-142)||(16863382-16863499)
chr2 (23-106)||(2248967-2249051)
chr2 (23-78)||(34176631-34176687)
chr2 (28-95)||(38576973-38577041)
[»] chr5 (4 HSPs)
chr5 (23-141)||(972754-972873)
chr5 (24-140)||(7982412-7982529)
chr5 (23-119)||(37077601-37077696)
chr5 (1-54)||(2243324-2243378)
[»] chr8 (4 HSPs)
chr8 (36-106)||(39280913-39280984)
chr8 (23-143)||(37010376-37010497)
chr8 (24-106)||(7590347-7590430)
chr8 (54-94)||(34695801-34695841)
[»] chr3 (4 HSPs)
chr3 (23-143)||(54437561-54437681)
chr3 (23-106)||(7641808-7641892)
chr3 (83-142)||(46303295-46303354)
chr3 (23-106)||(21570329-21570412)
[»] chr1 (5 HSPs)
chr1 (54-106)||(45136781-45136833)
chr1 (23-106)||(3231918-3232002)
chr1 (23-97)||(38839692-38839765)
chr1 (23-142)||(2534447-2534566)
chr1 (31-119)||(3367706-3367794)
[»] chr4 (3 HSPs)
chr4 (82-141)||(22050625-22050683)
chr4 (82-140)||(25062245-25062303)
chr4 (83-143)||(11020167-11020227)
[»] chr6 (2 HSPs)
chr6 (54-92)||(30669728-30669766)
chr6 (1-49)||(32047192-32047241)


Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 27651518 - 27651909
Alignment:
Q  1 tgttgaatgaaggagatgagttgtttgatgttcttgagatgaaaatggttactattgtaaaaataaagatgaagaaaagtgaatttttctttgatagggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  27651518 tgttgaatgaaggagatgagttgtttgatgttcttgagatgaaaatggttactattgtaaaaataaagatgaagaaaaatgaatttttctttgatagggc 27651617  T
Q  101 taaattgcccccaaatcatgaaggagtaacgtagaaaaaaccactgctataacattgattgatttgctttatagaaactccatatattggtcttgtaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27651618 taaattgcccccaaatcatgaaggagtaacgtagaaaaaaccactgctataacattgattgatttgctttatagaaactccatatattggtcttgtaaat 27651717  T
Q  201 tgatcactttaaaagtatggtgannnnnnnccaatgaatcaatcatttgtgccattaaatgtgtgttggagcattatc--aaaatattatgttacatggt 298  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  27651718 tgatcactttaaaagtatggtgatttttttccaatgaatcaatcatttgtgccattaaatgtgtgttggagcattatcaaaaaatattatgttacatggt 27651817  T
Q  299 tatgttaaaacactgaattatgctatcaagattagtttttccctattaggaagagcatcgatgttgaatgggtggagaatgatagaaggaat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27651818 tatgttaaaacactgaattatgctatcaagattagtttttccctattaggaagagcatcgatgttgaatgggtggagaatgatagaaggaat 27651909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 4674952 - 4674876
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttactattgt-aaaaataaagatgaagaaaagtgaatttttctttgatagg 98  Q
    ||||||| ||||||||||||||||||| |||| | | |||||||||||| |||||||| || ||||| |||||||||    
T  4674952 gtttgattttcttgagatgaaaatggtaactaatttcaaaaataaagataaagaaaagggagtttttgtttgatagg 4674876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 43208758 - 43208669
Alignment:
Q  54 attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaacca 143  Q
    ||||||| ||||||||||||||||| | | ||||| || ||||||| |||||| ||| ||| |||| ||||  ||| |||||||||||||    
T  43208758 attgtaagaataaagatgaagaaaaataactttttattcgatagggataaattaccctcaattcatcaagggataatgtagaaaaaacca 43208669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 32988581 - 32988646
Alignment:
Q  54 attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaattgcccccaaatcat 119  Q
    ||||||| |||||||||||||||||    |||||||||||||| | ||||||| ||||||| ||||    
T  32988581 attgtaagaataaagatgaagaaaatatgatttttctttgatatgtgtaaattacccccaattcat 32988646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 33362476 - 33362527
Alignment:
Q  54 attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 106  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||  ||||||||    
T  33362476 attgtaaaaaaaaa-atgaagaaaagagaatttttctttgatataggtaaatt 33362527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 16576315 - 16576208
Alignment:
Q  1 tgttgaatgaaggagatga-gttgtttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaatttttctttgatagg 98  Q
    ||||||||||||||||||| |  ||||||||||||||||| ||||||||| | | ||||||| || |||| ||||||||||  |||||||||||||||||    
T  16576315 tgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaagataatttttctttgatagg 16576216  T
Q  99 ggtaaatt 106  Q
    | ||||||    
T  16576215 gctaaatt 16576208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 16863499 - 16863382
Alignment:
Q  24 tttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaattgcccccaaatcatgaa 122  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||  |||||||||||||||| || ||||||  |||||| |||||      
T  16863499 tttgatgttcttgagatgaaaatggtaactgattgtaagaataaaga-gaagaaaaaggaatttttctttgatatggataaatt-accccaattcatggt 16863402  T
Q  123 ggagtaacgtagaaaaaacc 142  Q
    || |||| ||||||||||||    
T  16863401 ggggtaatgtagaaaaaacc 16863382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 2248967 - 2249051
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 106  Q
    |||| ||||| |||||||||||||||| ||| ||| ||| |||||||||||||||||    ||||||||||||||| ||||||||    
T  2248967 gtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaatatgatttttctttgatagaggtaaatt 2249051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 34176687 - 34176631
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaa 78  Q
    ||||||| ||||| ||||||||||||| ||| |||||| ||||||||||||||||||    
T  34176687 gtttgatattcttaagatgaaaatggtaactgattgtagaaataaagatgaagaaaa 34176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 38576973 - 38577041
Alignment:
Q  28 atgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtga-atttttctttgat 95  Q
    |||||||| ||||||||||||| ||| ||| |||||||||| |||||||||| ||| |||||||||||||    
T  38576973 atgttctttagatgaaaatggtaactgattataaaaataaatatgaagaaaa-tgagatttttctttgat 38577041  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 972873 - 972754
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttacta-ttgtaaaaataaagatgaagaaaagtgaattttt-ctttgataggggtaaattgcccccaaatcatg 120  Q
    ||||||||||||||||||||||||| | |||| || |||||||||||| ||| |||| ||||||||| |||||| | || |||||| ||||||||||||     
T  972873 gtttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaa-tgaattttttctttgaaatggataaattacccccaaatcatt 972775  T
Q  121 aaggagtaacgtagaaaaaac 141  Q
    ||||  |||||| ||||||||    
T  972774 aagggataacgtcgaaaaaac 972754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 7982412 - 7982529
Alignment:
Q  24 tttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaat-ttttctttgataggggtaaattgcccccaaatcatga 121  Q
    |||||||||||  ||||||||||||| ||| ||| ||| ||||||||| || ||| |||||  |||||||||| ||||||||||| |||||||| ||| |    
T  7982412 tttgatgttctcaagatgaaaatggtaactgattttaacaataaagattaa-aaaggtgaaaattttctttgaaaggggtaaattacccccaaaacatca 7982510  T
Q  122 aggagtaacgtagaaaaaa 140  Q
    ||| | |||||||||||||    
T  7982511 aggggaaacgtagaaaaaa 7982529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 37077696 - 37077601
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttactattgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaattgcccccaaatcat 119  Q
    |||| |||||||||||||||||||| | |||  | ||| |||||||||| |||||| ||||  | ||||| |||||||||||||  |||||||||||    
T  37077696 gtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaa-tgaaaatctctttaataggggtaaattatccccaaatcat 37077601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2243324 - 2243378
Alignment:
Q  1 tgttgaatgaaggagatga-gttgtttgatgttcttgagatgaaaatggttacta 54  Q
    |||||||||||||| |||| |  ||||||||||||||||||||||||||| ||||    
T  2243324 tgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaacta 2243378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 39280984 - 39280913
Alignment:
Q  36 gagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 106  Q
    |||||||||||||| ||| ||| ||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  39280984 gagatgaaaatggtaactgattttaagaataaagatgaagaaaaggggatttttctttgataggggtaaatt 39280913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 37010376 - 37010497
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaa-tttttctttgataggggtaaattgcccccaaatcatg 120  Q
    |||||||||| |||||||||||||||| ||| ||| | |||||||||||||| |||| |||| |||||||| || || |||||| | ||||||||||||     
T  37010376 gtttgatgtttttgagatgaaaatggtaactaatttttaaaataaagatgaa-aaaaatgaattttttcttagaaagaggtaaactacccccaaatcatc 37010474  T
Q  121 aaggagtaacgtagaaaaaacca 143  Q
    ||   | ||||||||||||||||    
T  37010475 aaatggcaacgtagaaaaaacca 37010497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 7590347 - 7590430
Alignment:
Q  24 tttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 106  Q
    |||||||||||||| |||||| |||| ||  ||||||| |||||||| |||||||| ||| ||||||| | |||||||||||||    
T  7590347 tttgatgttcttgaaatgaaattggtaaccgattgtaagaataaagacgaagaaaaatgagtttttctataataggggtaaatt 7590430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 34695841 - 34695801
Alignment:
Q  54 attgtaaaaataaagatgaagaaaagtgaatttttctttga 94  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  34695841 attgtaagaataaagatgaagaaaagagaatttttctttga 34695801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 54437681 - 54437561
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttacta-ttgtaaaaataaagatgaagaaaagtgaatttttc-tttgataggggtaaattgcccccaaatcatg 120  Q
    |||| ||||| |||||||||||||||| | |  |||||| ||||||||||| ||||| ||| |||||| |||||||||| |||||| |||  || | |||    
T  54437681 gtttaatgttattgagatgaaaatggtaatttgttgtaataataaagatgaggaaaa-tgagtttttcctttgataggg-taaattacccttaatttatg 54437584  T
Q  121 aaggagtaacgtagaaaaaacca 143  Q
    |||| ||||||||||||||||||    
T  54437583 aaggggtaacgtagaaaaaacca 54437561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 7641892 - 7641808
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 106  Q
    ||||||||||||||| || |||||| | ||| ||| ||| ||||||| |||||||||   || ||||||||||||||||||||||    
T  7641892 gtttgatgttcttgatataaaaatgataactgattttaagaataaagttgaagaaaatgaaaattttctttgataggggtaaatt 7641808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 46303354 - 46303295
Alignment:
Q  83 atttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaacc 142  Q
    |||||||||||||||| ||||||| | ||||| |||| ||||| ||| ||||||||||||    
T  46303354 atttttctttgataggagtaaattactcccaattcatcaaggaataatgtagaaaaaacc 46303295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 21570412 - 21570329
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggtta-ctattgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 106  Q
    |||||||||||||| ||||||||| || | | ||||||| ||||||||| ||||||| ||||| ||| ||||||| || ||||||    
T  21570412 gtttgatgttcttgtgatgaaaatagtaatcaattgtaagaataaagataaagaaaaatgaatattt-tttgatatggataaatt 21570329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 45136781 - 45136833
Alignment:
Q  54 attgtaaaaataaagatgaagaaaagtga-atttttctttgataggggtaaatt 106  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  45136781 attgtaagaataaagatgaagaaaa-tgagatttttctttgataggggtaaatt 45136833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 3232002 - 3231918
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaatt 106  Q
    ||||| |||||||||||||||||| |  ||| |||||||| ||||| |||||||||| ||| ||||||||| ||| || ||||||    
T  3232002 gtttgttgttcttgagatgaaaatagcaactgattgtaaagataaacatgaagaaaaatgagtttttcttttatatggataaatt 3231918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 38839692 - 38839765
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaatttttctttgatag 97  Q
    ||||||||||||||||||||||||  | ||| ||||||| |||||||||||| |||| |  |||||||||||||||    
T  38839692 gtttgatgttcttgagatgaaaat--taactaattgtaagaataaagatgaaaaaaattagatttttctttgatag 38839765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 2534447 - 2534566
Alignment:
Q  23 gtttgatgttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaa-tttttctttgataggggtaaattgcccccaaatcatg 120  Q
    |||||||||| ||||||||||| |||| | | ||| ||||||||||||||||||||| ||||  |||||||||| |  |||||| |  || ||||||||     
T  2534447 gtttgatgtttttgagatgaaagtggtaaattattttaaaaataaagatgaagaaaa-tgaagattttctttgaaaatggtaaa-tcacctcaaatcatc 2534544  T
Q  121 aaggagtaacgtagaaaaaacc 142  Q
    |||||  |||||||||||||||    
T  2534545 aaggaacaacgtagaaaaaacc 2534566  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 3367794 - 3367706
Alignment:
Q  31 ttcttgagatgaaaatggttact-attgtaaaaataaagatgaagaaaagtgaatttttctttgataggggtaaattgcccccaaatcat 119  Q
    ||||||||||||||| | | ||| || |||| ||||||||||||||||| |||| |||||||| |||| |||||||| | ||||| ||||    
T  3367794 ttcttgagatgaaaacgataactgatcgtaagaataaagatgaagaaaaatgaa-ttttctttaatagaggtaaattactcccaattcat 3367706  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 22050683 - 22050625
Alignment:
Q  82 aatttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaac 141  Q
    ||||||||||| | ||||||||||| |||| ||||||| |||| ||||||||||||||||    
T  22050683 aatttttctttaaaaggggtaaattacccc-aaatcatcaaggggtaacgtagaaaaaac 22050625  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 25062303 - 25062245
Alignment:
Q  82 aatttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaa 140  Q
    ||||||||||||||| ||||||||| |||||||||||  || | |||| ||||||||||    
T  25062303 aatttttctttgatatgggtaaattacccccaaatcagtaaagggtaatgtagaaaaaa 25062245  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 11020167 - 11020227
Alignment:
Q  83 atttttctttgataggggtaaattgcccccaaatcatgaaggagtaacgtagaaaaaacca 143  Q
    ||||||||||||||  ||||||||  |||||| |||| |||| ||| ||||||||||||||    
T  11020167 atttttctttgatattggtaaatttaccccaattcattaaggggtatcgtagaaaaaacca 11020227  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 30669728 - 30669766
Alignment:
Q  54 attgtaaaaataaagatgaagaaaagtgaatttttcttt 92  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  30669728 attgtaagaataaagatgaagaaaaatgaatttttcttt 30669766  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32047241 - 32047192
Alignment:
Q  1 tgttgaatgaaggagatga-gttgtttgatgttcttgagatgaaaatggt 49  Q
    ||||||||||| ||||||| |  |||||||||||||||||||||||||||    
T  32047241 tgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaaatggt 32047192  T

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