View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_26 (Length: 408)
Name: NF18173_low_26
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 48900701 - 48900308
Alignment:
| Q |
17 |
ggttgctggcggctatgaggccgatgaagaagcgccggattctgaaacaccgggagaaaataccgtcatcgccga---caaatgaattgaaagataacga |
113 |
Q |
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| T |
48900701 |
ggttgctggcggctatgaggccgatgaagaagcgccggattctgaaacaccgggagaaaataccgtcatctccgatgacaaatgaattgaaagataacga |
48900602 |
T |
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| Q |
114 |
agaagaatcgagtgagaatctctatctgtctgtaatctgattttgattaactaatttgtgaatttcagcttcatttgctacctaattggtaattgccact |
213 |
Q |
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| T |
48900601 |
agaagaatcgagtgagaatctctatctgtctgtaatctgattttgattaactaatttgtgaatttcagcttcatttgctacctaattggtaattgccact |
48900502 |
T |
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| Q |
214 |
gtttatgcttaattgttctgtaattagtgttactgatcaagttttgcagagttttttcatgatgattaactaatttgagaatcttaaattcaattgatac |
313 |
Q |
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| T |
48900501 |
gtttatgcttaattgctctgtaattagtgttactgatcaagttttgc-gagttttttcatgatgattaactaatttgagaatcttaaattcaattgatac |
48900403 |
T |
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| Q |
314 |
ttaattgtttgcttctgcatatgcttgattactgtgtaagctaaacctaagcctgtataattatctcaaataatatagttcgtgtaaaataatcc |
408 |
Q |
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| T |
48900402 |
ttaattgtttgcttctgcatattcttgattactgtgtaagctaaacctaagcctgtataattatctcaaataatatagttcgtgtaaaataatcc |
48900308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 11231895 - 11232249
Alignment:
| Q |
17 |
ggttgctggcggctatgaggccgatgaagaagcgccggattctgaaacaccgggagaaaataccgtcatcgccga---caaatgaattgaaagataacga |
113 |
Q |
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| T |
11231895 |
ggttgctggcggctatgaggccgatgaagaagcgccggattctgaaacaccgggagaaaataccgtcatcgccgatgacaaatgaattgaaagataacga |
11231994 |
T |
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| Q |
114 |
agaagaatcgagtgagaatctctatctgtctgtaatctgattttgattaactaatttgtgaatttcagcttcatttgctacctaattggtaattgccact |
213 |
Q |
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| T |
11231995 |
agaagaatcgtgtgagaatctctatctgtctgtaatctgattttgattaactaatttgtgaatttcagcttcatttgctacctaattggtaattgccact |
11232094 |
T |
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| Q |
214 |
gtttatgcttaattgttctgtaattagtgttactgatcaagttttgcagagttttttcatgatgattaactaatttgagaatcttaaattcaattgatac |
313 |
Q |
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| T |
11232095 |
gtttatgcttaattgctctgtaattagtgttactgatcaagttttgc-gagttttttcatgatgattaactaatttgagaatcttaaattcaattgatac |
11232193 |
T |
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| Q |
314 |
ttaattgtttgcttctgcatatgcttgattactgtgtaagctaaacctaagcctgt |
369 |
Q |
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| T |
11232194 |
ttaattgtttgcttctgcatatgattgattactgtgtgaactaaacccaagcctgt |
11232249 |
T |
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