View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18173_low_27 (Length: 394)
Name: NF18173_low_27
Description: NF18173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18173_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 34 - 379
Target Start/End: Complemental strand, 5782837 - 5782492
Alignment:
| Q |
34 |
ttgtctaaaagttgtcatagagtggtcgtagaaatatcatttctaatgaaaaattaatgatttgttgattggatgtttgtcatatttatgtaagtgctga |
133 |
Q |
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| T |
5782837 |
ttgtctaaaagttatcatagagtggtcgtagaaatatcatttctaatgaaaaattaatgatttgttgattggatgtttgtcatatttatgtaagtgctga |
5782738 |
T |
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| Q |
134 |
aatttctttatgtgagaaaaagaaggtgcaaaaacagctaaacaacgtaaaaggaaagagtggtgggctacctaggaagcaagctatggcacgcagagca |
233 |
Q |
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| T |
5782737 |
aatttctttatgtgagaaaaagaaggtgcaaaaacagctaaacaacgtaaaaggaaagagtggtgggctacctaggaagcaagctatagcacgcagagca |
5782638 |
T |
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| Q |
234 |
aaaagcacaatccccataaccaatattcctgtactctatactgtttgtataagtgctttttgtcttgcattttcaattacaagcacaaggcaaaacataa |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5782637 |
aaaagcacaatccccataaccaatattcctgtactctatactgtttgtataagtgctttttgtcttgcattttcaattacaagcacaaggcaaaacataa |
5782538 |
T |
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| Q |
334 |
taatttttagtgctacttctaaaagctgagagttttgcaagaatat |
379 |
Q |
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| T |
5782537 |
taatttttagtgctacttctaaaagctgagagttttgcaagaatat |
5782492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 48872423 - 48872380
Alignment:
| Q |
34 |
ttgtctaaaagttgtcatagagtggtcgtagaaatatcatttct |
77 |
Q |
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| T |
48872423 |
ttgtctaaaagttgtcataaagtggttgtacaaatatcatttct |
48872380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 6435080 - 6435034
Alignment:
| Q |
34 |
ttgtctaaaagttgtcatagagtggtcgtagaaatatcatttctaat |
80 |
Q |
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||||||||||||||||| | |||||| ||| |||||||||||||||| |
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| T |
6435080 |
ttgtctaaaagttgtcacaaagtggttgtacaaatatcatttctaat |
6435034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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